|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86121_cuf1 >transcript:BL86121_cuf1-protein ID=transcript:BL86121_cuf1-protein|Name=transcript:BL86121_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=125bp
MNDFFPLSRHRCLASIILMNDFFPLSRHRCLASIILMNDFFPLSRHRCLA
SIILMNDLFPLSRYRCVASIILMNDFFPLSRHRCLASIILMNDLFPLSRY
RCVASIILMNDFSLSADTGVWLLLF Run BLAST on NCBI mRNA from alignment at Sc0000461:155670..162905+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86121_cuf1 ID=transcript:BL86121_cuf1|Name=transcript:BL86121_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7236bp|location=Sequence derived from alignment at Sc0000461:155670..162905+ (Branchiostoma lanceolatum)
CCTTAGTGGTACATGATAGGAATAGAAGCTAAATAAATAAACAAAATTGT
CTACCTTCCTACGTAACTAGACCAGAGGCTGGCCCCTTGCTTCTCTCAGC
TCTGTCTGGTTTCTACAAGTTACATGGTCCATAACCATAGCGTTTGCTGC
GGGTGAGCTGAATCCTGTGTCTTTTACAATCTGGTCTAGAAGTTAGATTT
ATCTATTTCCTTACATTTATCTAGCATTTACATTGCATTCTAGAGGAAAA
GCAGCGGAGCCACTCCAGAAGAAGAGACTGCTAGCTTGCCTATCAACAGA
AGGGATACCAACATGGGAAATTCTCAAATGCAGCAACTTAGCATTTTCCT
GACACAAGACTGGGCCCAAGAATATGGCATTCCTTAAGTTAAGTGACACT
TTTCCCTCAATGAACCCCTTTCTCAGGACGTTTTATCATTTGTAATAAAC
TTAAAACTACTGTAATTTTGTTTCTTTCACTGTAACTTTATGTTCACTGT
TATCACTGTCACCTCTGTATTGTGAACTTTGGAATTATGGAAAACCTGTT
GTGATTATTAATGATTTCTTCACATGTCCGTTCTGTAAAGTTAAAGTTCA
GTGAAAATGTCCATTTTCCTTACACCCTGAAATTTAGCTACCGTGAAGAT
AAAGTGAATTACAGTAACTTCACTCTTACCATACTGAGCACTTCCAACTC
ACTGCACTCAAGCAATTCTAAGCACCTGTAAGTCCCTACACTCCAGCAGT
CTAAGCACATGTAAATCACATCAGCCACTCTAAGCACCTGTAAGCACCCC
AGCCATTGTAAGCACCTGTAAGTCACTCCAGCCATTGTAAGCACCTGTAA
GTCGATACAGCCACTCTAAGCACATGTAAGTCCCTCAGCCACTCTAAGCA
CATGTACGTCACTGCACTCCAGTCACTTTAAGCACCTGTATCATTAATCT
TTAGGGTGGTCCCTTCAGTTGACTATGTAACTGATTTCCAAGGGAGCCCG
TCCGGGTGAATGGTGTTAATAAACGTATGGCTGATACGAGACGGGATTTC
GCCAGGCCTCCATCTGGGTGATTTGTAGTGAATCACCAACTCCAGACAGA
AGGATTTGGACCATCGCACACCAGGGCATGCCCCTACTCTTTTGACACCT
GTAAGTCACTCCACTCCAGCCACTCTAAGCACCTGTAAGTCACTCCAGCC
ATTCTAAGCACCTGTAAGTCACTCCAGCCACTCTAAGCACCTGTAAGTCA
CTCCAGTCATTCTAAGCACCTGTAAGTCACTCCAGCCACTCTAAGCACCT
GTAAGTCACTCTAGCCATTCCAAGCACTTGTAACTCAATGCGCCCAGCCA
TTCTAAGCACCTCTGACTGCGCCCTGGCCAATCTTAGCACCTCTTACTCA
CTTGCATCCTATGTACTCTGGCCATTCTAAGCACTTAAGCTATTCAAACT
CACTACACTCTGGCTGTTCTGATTACTTGGGTGTTTGGATGCATGATCGA
ATAAATGATTTGTTACCCCTTGAGCAGATGTAGGTGTTTGTCTGCATGTT
CTGACAAATGATCATGATCTTTCCTCCAAGCAGACACAGGTGTTTGGCTT
CTATTATTCTGTTCAATGATGTTTTTACTCTGAGCAGTTATGGGTTTTTG
GTTTCTAATGTTCTAATTAATGATTTTTTCCCCTCTTACCAGACACAGGT
ATTTAGTTTCTAAAGTGCTTCTGATGAACGATATTTTTTCCCTCCAACAG
AAACATATGTTTGGCTACATGTAATGATGATATTGATTTTTTTATCCTCC
AAGCAGATACAGGTATTTGGCTAATCTATTATTCTGATGAATGATATTTT
CCCTCTCAGCAGACACAGGTGTCTGGCTTCTATTATTCTGATGAATGAGT
TTTTTTCTCTTAGCAGACACAGGTGTTTGGCTTCTATTATTCTGATGAAT
TTTTTTTTTTTTTTTTGAGCAGATACAGGTATTAGGCCTCTATTATTCTG
ATGAATGTTTTGTTTCTTTGAGCAGATACAGGTATTTGGCTTCTATTATT
CTGATGAATGATTTTTTGATGAATGATTTCTACAAGTTACATGGTCCATA
ACCATAGCGTTTGCTGCGGGTGAGATGAATCCTGTGTCTTTTACAATCTG
GTCTAGAAGTTAGATTTATCTATTTCCTTACATTTATCTAGCATTTACAT
TGCATTCTAGAGGAAAAGCAGCGGAGCCACTCCAGAAGAAGAGACTGCTA
GCTTGCCTATCAACAGAAGGGATACCAACATGGGAAATTCTCAAATGCAG
CAAGTTAGCATTTTCCTGACACAAAACTGGGCCTAAGAATATGGCATTCC
TTAAGTAAATTGACACTTTTCCCTCAATGAACCCCTTTCTCAGGATTTAC
TGAAAACTGTTTATCATTTGTGATTTACTTCAAACTACTGTGATTTTGTT
TCTTTCACTGTAACTTTATGTTCACTGTTATCACTGTCACCTCTGTATTG
TGAACTTATAATCATTATGGAAAACCTGTTGTGATTATTAATGATTTCTT
CACACATCCATTCTGTGAAGTTAAAGTTCAGTGAAAATGTTCATTTTCTT
TACAACGCCACTCCAGCCACTCTAAGCATCTATAAGTCACTTCACTCCAG
CCTTTCAAAGCACCTGTAAGCCACTCAAGCCACTCTAAGCACCTGTAAGG
CACTCCACTCCAGCCACTCTAAGCACCTGTCACTCCAGTCATTCTAAGCA
CCTGTAAGTCACTCCAGTCATTCTAAGCACCTGTAAGTCACTCCAGCCAC
TCTAAGCACCTGTAAGTCACTCTAGCCATTCCAAACACTTGTAACTCAAT
GCGCTCAGCCATTCTAAGCACCTCTGACTGCACCCTGGCCAATCTTAGCA
CCTCTTACTCACTTGTATCATCCTATGTATACGTACTCCTAAGCACTTTA
GCAATTCAAACTCACTACACTCTGGCTGTTCTGATTTCATGGGTCTTTGG
ATGCATCAAATGACTTTTTCCCTCTCAGCAGACACAAGTGTTTTGCTTCT
ATTATTCTGATGAATGATTTTTCCCTCTCAGCAGATACAGGTGTTTGGCT
TCTATTATACTGATGAATGACTTTTTCCCTCTCAGCAGACACAGGTGTTT
GGCTTCTATTATACTGATGAATGACTTTTTCCCTCTCAGCAGACACAGGT
GTTTGGCTTCTATTATTCTGATGAATGACTTTTTCCCTCTCAGCAGACAC
AGGTGTTTGGCTTCTATTATTCTGATGAATGACCTTTTCCCTCTCAGCAG
ATACAGGTGTGTTGCTTCTATTATTCTGATGAATGACTTTTTCCCTCTCA
GCAGACACAGGTGTTTGGCTTCTATTATACTGATGAATGACCTTTTCCCT
CTCAGCAGATACAGGTGTGTTGCTTCTATTATTCTGATGAATGATTTTTC
CCTCTCAGCAGACACAGGTGTTTGGCTTCTACTATTCTGATGAATGATTG
TCTTCCTCTTAGCAGATACAGGTGTTTTATTTCTGTTCTACTGATGAATG
ATTTATTTACTGTATTAAAGCAGACACACCCTTACACACATGTTTGGCTG
CATGTGCTGATAAAGGATTTTTTTCCCTCTTAGCAGACACAGGTACTTTG
CTTCTGTTATTGTCATGAATGTTTTTTTTGTTTTTGGTTTATATTGTCCT
AATTCATGATTTTTCCCCCTCCAAGAAGACATGGGTATTTGGCTTCTATT
GTTTTGATGAATGATTTTTCCCTTTTAGCAGGTACAAGCGAATTGCACAT
TGTAATGAATAATTTTTTTGTCAACTGTGCAGATTCTCTGGTTCTTTTGC
TAATGTATTTTTTTTTTGCCAGCCAAACGACATAAGGGGACAGTGACACA
GCGACAGCACTGTCGGATAGATGTTTGGTGTACACCCTTTCTCATTGGAC
ATTAAGGTCTCATTCCTGTATTACTCCGAGTGGGTACCCTAAAAGAATCT
GTACCCCCAAAAATTCACGACTGCATGAACGTGTGTTTAGCATGGTTTGT
ATTTAGAAGCACACCATCCATGCAGTTTGTTCAGATCAATGGGTTAATGC
ACCTTTCGTAAAGCATGTTTCACAATTGTTTGGGAGTACAGTACAGTATT
GAATTGATAGATTGACAACTGAATGAAGAATATATGTGTACATGTGTATA
ATTCTGTATTATTGTTGAATTTCTTGTGTGTAGGACATGTGAAGAAGAAG
AGGAGCCATGGCAGAGACAGCAGCTCAGATGTCAGCAGTCTGTCCAGTGT
AGGTAACCTACTAACAGTAAATCTTCAAATTCCTGCAGTTGGCAAAATCA
TGACCCTGCGAATAATTGTGTTTTGTAATTGCAGTCTGCAGGCCTATTTG
AGCTTTTCATGAATAAATAAAGGTTCAAACTAACAAATTACCTGAAAAAT
TGTTTGAGTTACAAACTACGAGCACTAAAGAAAGCTCCTTTACCCTCAAA
TTCCCTCAAAAATGAAATGAATTGTATATTTATAGTTTTGCCTGGTAGCC
ATCCTGGTGTACCTGTGCTGTACCGGTACTAAATCAGGTCAAGCCTGAGG
ATTACAGATCAGTGGAAGGCAACTTTGACAGATAGAATCACCATGAATTA
CCGTGGCAGTGTACTGAAGACTCCTGTAGCACAGATTGAGCTTTAAAAAT
GCCAGAGTCAAATTTTCATCTTTATTTCAATACTGGAGTCATAGCTGACT
GTTGGTGAGGGTGATTGTCATTATAGATGCCATGTAATAGGCCCGTGTCT
AGCAGAATTAAACATTATGTTGTTATCGGTTGTTTTTGTCCTTTAATCAA
CCATTACTTGAACATTAGTAGTTCAGGGCCAGACCTGTACCTAAACCTGT
GTACCTGTACCTAGAATTTGTTTAGGTACACAGCTCTAACCAGGTGCTAC
ATGTTATATCGTGAACAACCATTGGACAAACTTCAGCTTGGCGACTTGAC
TTGAATTAAAAATAACATTTTCAATGTGTTTCTGGATACTTGTTCGTCAA
ATTATAGCCTTGGTAAATGTTTTCTCCACTTGATTTGGGTCAAAATTAGA
CTTTCATCTTAGTCAAACATGACCATTGATACCCATACTTTTAAAGACTT
GAAAAAAAAGGCCCTTCCAAAAATGCGCTCTTAGGATATCTAGTCTGATG
TTGAAAATAATGTTTATAGTGTTTGTGTAAATATTTATTCATCAATTTCC
ACCCTTTAACAACTAAAGTCTTCTATTGCGTTGGCCCAAAAATTGACCTG
GAACTTCAGCAATTATCCCATAAGAACCAGTACTTAAGGGATGATTCCCA
TCATACATCACACCCCATGGGTCTGCATGAAGGGGCACTACTCAATTCCT
GGATTATGAATGGTTCATTTATATGTTCACCTGTGAATAAATTTGACCAA
CTTGGTTGATTTTGTATTTATAAAGATGTGGTCTATTACAAATAACAACT
GCTTCTGTTTTTTTCTGGGGTTGCCTATATGCCTTTAACTACATGTATCT
GTCTGTATATGTATCTGTCTGTACTGTATATCTATAGCTGATGCCCAGCA
TGTACCTGCGAAGCTGGTGTGTTACGCTTACGGGTGGTTATACTGGGCTG
TACAGATACAGATACAGATACGGAACTGAGTAGTATCTTAATCAACATGC
AAATTAAGATTTCTGATTCTAGATTCATAAGAAATTAATCCTTTTTTAAA
GCACATTCATTTATGTATTTTACGCTTGTGTTTGCAGTGTCAGTGGTATG
AAGGACCTAAGCTGAGGGATTTCCTGTTGGGATGTGAGCCTGAGAAGACT
ACTCTTCAAGCAGAGGTTGTAAGGGAGATCATGAACCTAACTCAAGACTA
CTTTCCAAGTAGAGGTTGGAGGGGGGAAATGTTATATTCTCCTGTTTACA
GGTTCCAATCACAAGAAGGTATAATCAGGCCTTTAGTTGAAAACCAAAGG
AGACCAACTGCAGATTAAAAGTCTATCAACTGCCAATCTAATCCAGACCT
TTGAGGGAGTTGAGAAGAGTGCTGCCAGTAATGTAGTTACACTTTTAGCA
TGACACAAATGTGAAGCTTGAAGTCTAAATGTCATGAGATAAGATTAAGC
GACAGATCTGTATTTTATGTGGAAGATTCTAATGGAACACATATTTCACT
ACAAGCTAATGGTTTTGTTTATTAATCAAATCACAAGATCATTTTCCAGT
GTCTGATGTTCATATGACATACCAATTCCTCTAATCTGTGCCCATCAAGG
CTTTCCAATGAATGGGTTCAGAAGCTTTATGACAGGATTTGCCAAACATT
CAGAAAAATTATAAATGAATCACTGCTGAACATTGGTGCACAAACACAAA
GACATGTACTAGAGAAATATGGAAAAGGCCCAAAAGTACCTCATAAAGTA
ATCTCTGGCATAACTCTTATGTACTTTATTCATCAAAGTGTTTGTATATT
AAGACACAACAATTTGTTGTTTTTTTCCTTCAAAAATTTGCTCACTCCAT
TGCTTTTCAATTGCATAATGTTCTTGTCTTCCTAGTTGCTACAGTTTCCC
AAAATGTGTTGTCCATAGAAATGATATATTTGATGTGGTCGTAAATGACT
CTATCAAACTTTGATTTATGGATTTTTGATTTTGACGCACCAGATTTTAT
TTGTACCCATTGTATGTTGTCCGCTTCCGTTTTGTTTGTTTGTTTTATTA
AGATCTCCATTAGTGATATACAATATGCACTATTCTTCCTGGAGTCCATA
TACAAATAAAGAAGTTCTACTGCCAACTGTAACACGTATTGTGATTATTG
TCTGTGTATATATTATACTGGGCCCAATGGAAATCAGGTATCCTAGCTGT
TTGGACTACCCAGGAGTCTCAAGATGAAATAAATAGATAAATAAATGAAT
AAACAAACTGTTTTCTTATTTTGTCTTACCAGTTTCTCCCAGTTGTATGT
CCGTTTAACTTCGTTTGTTTTTCTAAATAGTCAAAGAACAAAGAAATTAA
ATCAGTACGACTGTAATCAGTTTTGTGTTGTTATTGTTGATGCGTGGAAA
TGGAAACAAGTGATGCGTTGTTTATCCCTACAGAGGTTGTGAAATATACA
GTATGTATGTGTATATATGTGTTTCAAAGATTTGTATGTCATCTGATGTG
CTTTGTATTTATTGAAGGGTCTATTTCTGATTGAAT Coding sequence (CDS) from alignment at Sc0000461:155670..162905+ >transcript:BL86121_cuf1 ID=transcript:BL86121_cuf1|Name=transcript:BL86121_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=378bp|location=Sequence derived from alignment at Sc0000461:155670..162905+ (Branchiostoma lanceolatum)
ATGAATGACTTTTTCCCTCTCAGCAGACACAGGTGTTTGGCTTCTATTAT
ACTGATGAATGACTTTTTCCCTCTCAGCAGACACAGGTGTTTGGCTTCTA
TTATTCTGATGAATGACTTTTTCCCTCTCAGCAGACACAGGTGTTTGGCT
TCTATTATTCTGATGAATGACCTTTTCCCTCTCAGCAGATACAGGTGTGT
TGCTTCTATTATTCTGATGAATGACTTTTTCCCTCTCAGCAGACACAGGT
GTTTGGCTTCTATTATACTGATGAATGACCTTTTCCCTCTCAGCAGATAC
AGGTGTGTTGCTTCTATTATTCTGATGAATGATTTTTCCCTCTCAGCAGA
CACAGGTGTTTGGCTTCTACTATTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000461 | genome | Sc0000461:155670..162905 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86121_cuf1 |
| Biotype | protein_coding |
|
