transcript:BL95077_evm2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95077_evm2
Unique Nametranscript:BL95077_evm2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95077_evm2

>transcript:BL95077_evm2-protein ID=transcript:BL95077_evm2-protein|Name=transcript:BL95077_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=130bp
MFRHKELICGLSRVVTIAVLPRLNMEELIFELNRRIQNLDKENSIKDRII
LNIKRTAERLPSSTADIDMNKVKKIKVMSFSMFRHKELICGLSRVVTIAV
LPRLNMEELIFELNRRIQNLDKENSIKDRF
Run BLAST on NCBI

mRNA from alignment at Sc0000003:5907854..5911503-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95077_evm2 ID=transcript:BL95077_evm2|Name=transcript:BL95077_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=3650bp|location=Sequence derived from alignment at Sc0000003:5907854..5911503- (Branchiostoma lanceolatum)
ATGTTCAGACATAAGGAGTTAATCTGTGGCCTCTCGCGTGTGGTGACCAT
AGCAGTCCTCCCCAGGCTGAACATGGAGGAGCTGATATTTGAACTCAACA
GGAGGATTCAAAACCTGGACAAAGAGAACAGCATCAAGGACAGGTTGGTC
AGTATCCTTAGGGACGTGGTGTTGGAGGAATACAGTCAGTTGGAAAGAGA
GTCAAAAGTCAGTTCCCCTGAACAAGAACAGGATATAGTAACCATGCAAG
AGAACGTTCCGACCCCGTATGCTGATACAATGTCAACAAAGGCCTCGAGT
CCTGACCCCTCACTGCAAAATCCTGGAATAGACGTTGTGATAAAAATTGA
AAACAAAGATACCACTAATGAAGTGCTCATGCCTAGAAGGGAGCTAGAGC
TTAATACAGACCAGGTACAGCAACAAGAGCAACTTTGCAACATCCCAAGA
CCAGGTTCGACAACAGTTCTTTCAACCGATAACCCCCAAATTAATACCTC
AATAGACTCTCCTATTAAAGAAGAACACTTTGATATGACGACTGTAGATC
GAGCTTCTCATGATGAAATCAACATGGACACCCCTACTTTTTATACCCAC
GTTTTCGATACAATTAATTCAATGAGTGATTCTTGCACAGAGAAGCCATT
GGAAGGTCACAAAACCTATCAGGAAACATATTTGGCTTCTAGTCTTCAAA
TTCCAGACTATGGGGACAATATTCCAGACCATACAAATACAGAATACCAT
GTGTCCGAGGAATCGATTGAGCAAATCGGTCAAATTTCTCAACTGTCCAA
CCAGGATCATCTTGAACATCAAGCGGACGGCGGAGAGACTGCCTTCATCA
ACAGCGGACATCGACATGAACAAAGTAAAGAAGATAAAAGTGAGGAAACA
CCTTTGACACCATGTCAACCGACTCCAGACCAGGCTTGTGACAACATGGC
GTCTGTTCTTCCTAACAAAAACTTTCGAATCGATGCCGAACGCTACGTAT
GTGACGTGTGCGGATTCAAAACAGTGAGCGCACACAGTTTCTCACAGCAT
AGGCGACGTCACAAATCAGGAAAACCTTTCATGTGCGACGAATGTGGTTA
CAGGGCATATGATAAGCACCGTCTTGTTGAACACATGAGGAAACACACTG
GTGAGAAACCTTTCAAGTGTAATCACTGCGACTACAAGGCGTCATTTCAA
AGTGGGTTATTCCAGCATATGAAAAAACACTCGGAAATAGAACCTTACTG
CTGTGGAGTTTGTAACTACAAGACATACCTGAAAGGCAACCTTAGCAATC
ATATGAAACGCCACATTGGTGAGAAACCTCACAAATGTGAGTACTGTGAG
TACAGAACAGATCAAAAGCATCATCTAATTACACACAGGAGGCAGCACAC
TGGTGAGAAACCCTACAGTTGTCAAGAGTGTGGCTTCCGAACAAGTCACA
GGAGGAGCCTCGTCAGGCATTTGAGAAGAAAACACAAATGAAAATACTGT
CCGTTACCAAAAATCCGTTACCAACTATTAATCCATTTGTTAATTTTATT
TATTTATTCATTTGTTTGTTTTTTCTGTTCATACCTGTTATCTGTTCATC
AATAGAGTAGACCAGAGCAGTAACTTTGCACTGATTTATAGTAGTGCAGT
GATGCCAACTACTTATACAAGTGGCCTCGATTCAAGTTTCCTTTTTTCTG
AGAAAGATTGTCTCAAAGGCACGTCTTTTTAGTTCAGTTTCAATGGTTTA
CGTTTGTGTATGTACCCACAGAGGTTAAGTTCAGCACAACTACGTATAAA
CAATACTATGGTTGGTATGTTTTGTGCTAGTGATTCCCGGCAATGTTGTA
TACATTGTTTCTTCGTGTCTCGTTACAATAAAGCTCAACATTGGCAAATT
TGCTGTACTCCTGTCTCAATGTATTATGAAAAGTTAAGCTACAATTCGGT
TAGTTTGTACGTTTAACACAAACTTCTCACTGTCCATGGCTTTATGGATA
CCCTCCCCGAGTTTATCCCTTCGTCTCGACGCAAGGAGAATGATAGAAGA
AACAAAGCAAGGACAAGTACCGATATAGAAATTCAGCATTCCAAGCTTGG
CCACTTTGGAGATCAGTTCAAAAGAAGATTATCACAGCCTCTAATACCAT
GGAAACAGGCCGTTGTCAGTCTGAAATTGGTTGGTCCACATATGCACACA
TTACCAAAATTAGGATATGTGTGACTCAGCGGTGTTGGCCACTAATCTTC
TAGGGCTCTGACCTTTGGAAGTTGGAACGGCTGCTTGAAACTGAGGTTCT
GAGAAAAAAATGTTGGAATTGTCCATCTTTACCAAAAGTGGCAATCTGTT
GAATAGATATGACAAAGGAATGATATGAATTTACCTGTAATGTTGCCTGG
TTTGTTTGTTGTAGTTGTTGTTTTTGCAATACTAATCACGTCCATTAGAG
TGTCGTCATCTGCAGATATCATGACATGAATTGGATAATCAGTGGTCCTG
ACCCTTTATGACCTTTGACCACAGTTTCAGAACCCTTGTCAGCCATATTT
GTTCCAATTCTTGGGAGGTCTCCTAGGACGTCTTGGCATCAAATTTAAAG
AAGAAATATCACCTTTTCCATCACGTTTTGACTTTCAAGCAGGTAAGATG
AACAGTATCCACCGAGAAAAGTCGTCAAAATGGGGAATTTCATTTTATTC
GCCAGGCTAACGATAATGTGGGGAGGGGGGCGTCCCACAACAAAAGACGA
AAAAAAAGCTCTTTTGACGTAGTTTTTTCAATATTGACTTCACATTCGAG
GGCTATGTATATTATAAAGGAGCGTCATAAGTAAAAGTTTAATTTTTACA
AGTTTTACCAGGGAAGACTATATTTCTAAAACCAAGGACCGAGAGCATTG
TCTATGCTAAATATTTCCAAGGCTTAGACCTTAGCGCCTTGAGTACAAAA
TTGATCCACATCTTATACCACGTATTTCTTTTATAGGTAATGTCCTTCAG
CATGTTCAGACACAAGGAGTTAATCTGTGGCCTCTCGCGCGTGGTGACCA
TAGCAGTCCTCCCCAGGCTGAACATGGAGGAGCTGATATTTGAACTCAAC
AGGAGGATTCAAAACCTGGACAAAGAGAACAGCATCAAGGACAGGTTGGT
CGGTATCCTTAGGGATGTGATGTTGGAGGAATACTGTCAGTTGGAACGCA
AGCCACACGTCAATTCCCCTGACGATATGACGTCGTCCATACCCGAAGAA
GAGCAGGAGACAACCTTGCAAGAAAACGCTCCGACCGTTAACGCTGAAAC
AATGTCAACAAAGACTTCAGGTCCTGACGCCTCAATGCAAAGTCCTGGAC
TGGACGTTGTCATCAAGAAAGAAAGCAACGACGAAAGCAGTGAAGTGCTC
ATGTCTACAAACGAACTATATCATGATACAGACCAGTTGAGGCTAACGCA
ACGAGAGCAACTTTACAACATTCCAGGTTCAAGTTCAGAAACACCTCCTT
CAACCGATAACTCCCTGATACAGATGATTAACTCTGTAAACTCTCGCATT
AAAGAAGAAGACTTTGATATGACGACAGTGGATGAAGCAGCTAGAGTTTC
TTATGATGAACTCAACATTGACACCCCTACTTTTTATACGCAGGTTTTAG

Coding sequence (CDS) from alignment at Sc0000003:5907854..5911503-

>transcript:BL95077_evm2 ID=transcript:BL95077_evm2|Name=transcript:BL95077_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=1572bp|location=Sequence derived from alignment at Sc0000003:5907854..5911503- (Branchiostoma lanceolatum)
ATGTTCAGACATAAGGAGTTAATCTGTGGCCTCTCGCGTGTGGTGACCAT
AGCAGTCCTCCCCAGGCTGAACATGGAGGAGCTGATATTTGAACTCAACA
GGAGGATTCAAAACCTGGACAAAGAGAACAGCATCAAGGACAGGATCATC
TTGAACATCAAGCGGACGGCGGAGAGACTGCCTTCATCAACAGCGGACAT
CGACATGAACAAAGTAAAGAAGATAAAAGTAATGTCCTTCAGCATGTTCA
GACACAAGGAGTTAATCTGTGGCCTCTCGCGCGTGGTGACCATAGCAGTC
CTCCCCAGGCTGAACATGGAGGAGCTGATATTTGAACTCAACAGGAGGAT
TCAAAACCTGGACAAAGAGAACAGCATCAAGGACAGGTTTTAGATGTTCA
GACATAAGGAGTTAATCTGTGGCCTCTCGCGTGTGGTGACCATAGCAGTC
CTCCCCAGGCTGAACATGGAGGAGCTGATATTTGAACTCAACAGGAGGAT
TCAAAACCTGGACAAAGAGAACAGCATCAAGGACAGGATCATCTTGAACA
TCAAGCGGACGGCGGAGAGACTGCCTTCATCAACAGCGGACATCGACATG
AACAAAGTAAAGAAGATAAAAGTAATGTCCTTCAGCATGTTCAGACACAA
GGAGTTAATCTGTGGCCTCTCGCGCGTGGTGACCATAGCAGTCCTCCCCA
GGCTGAACATGGAGGAGCTGATATTTGAACTCAACAGGAGGATTCAAAAC
CTGGACAAAGAGAACAGCATCAAGGACAGGTTTTAGATGTTCAGACATAA
GGAGTTAATCTGTGGCCTCTCGCGTGTGGTGACCATAGCAGTCCTCCCCA
GGCTGAACATGGAGGAGCTGATATTTGAACTCAACAGGAGGATTCAAAAC
CTGGACAAAGAGAACAGCATCAAGGACAGGATCATCTTGAACATCAAGCG
GACGGCGGAGAGACTGCCTTCATCAACAGCGGACATCGACATGAACAAAG
TAAAGAAGATAAAAGTAATGTCCTTCAGCATGTTCAGACACAAGGAGTTA
ATCTGTGGCCTCTCGCGCGTGGTGACCATAGCAGTCCTCCCCAGGCTGAA
CATGGAGGAGCTGATATTTGAACTCAACAGGAGGATTCAAAACCTGGACA
AAGAGAACAGCATCAAGGACAGGTTTTAGATGTTCAGACATAAGGAGTTA
ATCTGTGGCCTCTCGCGTGTGGTGACCATAGCAGTCCTCCCCAGGCTGAA
CATGGAGGAGCTGATATTTGAACTCAACAGGAGGATTCAAAACCTGGACA
AAGAGAACAGCATCAAGGACAGGATCATCTTGAACATCAAGCGGACGGCG
GAGAGACTGCCTTCATCAACAGCGGACATCGACATGAACAAAGTAAAGAA
GATAAAAGTAATGTCCTTCAGCATGTTCAGACACAAGGAGTTAATCTGTG
GCCTCTCGCGCGTGGTGACCATAGCAGTCCTCCCCAGGCTGAACATGGAG
GAGCTGATATTTGAACTCAACAGGAGGATTCAAAACCTGGACAAAGAGAA
CAGCATCAAGGACAGGTTTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95077gene:BL95077Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95077_evm2-E1BL95077_evm2-E1-1564476830-46567Branchiostoma lanceolatumexon
BL95077_evm2-E2BL95077_evm2-E2-1564476830-46565Branchiostoma lanceolatumexon
BL95077_evm2-E3BL95077_evm2-E3-1564476830-46563Branchiostoma lanceolatumexon
BL95077_evm2-E4BL95077_evm2-E4-1564476830-46561Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95077_evm2transcript:BL95077_evm2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:5907854..5911503 -
Properties
Property NameValue
Transcript idBL95077_evm2
Biotypeprotein_coding