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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=transcript|length=851bp
GTGGACTTACCCTTTTGAAAACCATGTTGGTTTTTGTCAAGATATTCGTT
TTTGTCGAGAAACTTTGATAGTCGCTTGTGCATTACCTGTTCGAATATTT
TGTCAAACAGGGGTAGTACGGAGATAGGCCTGTAGTTTTTGATGTCATCT
CGAGGTCCTTTTTTAAACAGAGGGAGAACTTTTGCATGTTTTAGTGTCTC
AGGGAATACTCCACCTTTTATTGAGTGATTGATTATGTGTGAGAGTGGTT
CAGCAATTAAATCTGCAGTTGCTTTAATAATATCAATTGGAAAATCGTAT
AAATCTTTGGATTTCTTGTTGTCGAGTTTGTTAAGGAGGGTTAAGATTTC
GtatcttgttgttttttgaaaaaggaaactTGAATTGTTTTCTGGTGTTG
ATTTCGAAACATTCGAGTCAGAATTTTTCGGTAGTTTTTTAATGAGATTA
GGTGCTACTTCAGAATAGTGATTGTTGAAGGCTTGGGCAATGTTGAAATT
TCCACTGatgtttttggttttataaGTCATGGTGTTTGGATAgttagatg
ttttttttctacCAAAAAAAGCATTGATATTCTCCcagaattttttgatg
ttttttcctGTGCTCAAAAATTTGTTTCTCATGTAAAGGAACTGGCTTTT
TCTAGTCTCCTTCTTTATGTCTTGTCTAGCAACTTGATATTCTCTTTCTA
CCTCTGTGCATTTTGTTTTCATGAATTTGCCATACAGAAAGTCTTTGTAT
TGgcttttctttaaaatattttctgtgATCCAAGGTTTTTCTTGCCTTTT
CATTTCTGACTTTGTGACGAATTTGTGAGGAACATGCATTTGAAAAAGAA
G Run BLAST on NCBI protein sequence of TCONS_00000386-protein >TCONS_00000386-protein ID=TCONS_00000386-protein|Name=TCONS_00000386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
LLFQMHVPHKFVTKSEMKRQEKPWITENILKKSQYKDFLYGKFMKTKCTE
VEREYQVARQDIKKETRKSQFLYMRNKFLSTGKNIKKFWENINAFFGRKK
TSNYPNTMTYKTKNISGNFNIAQAFNNHYSEVAPNLIKKLPKNSDSNVSK
STPENNSSFLFQKTTRYEILTLLNKLDNKKSKDLYDFPIDIIKATADLIA
EPLSHIINHSIKGGVFPETLKHAKVLPLFKKGPRDDIKNYRPISVLPLFD
KIFEQVMHKRLSKFLDKNEYLDKNQHGFQKGKS Run BLAST on NCBI transcript from alignment at sc0000001:2836817..2837667 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000001:2836817..2837667 (Clytia hemisphaerica)
CTTCTTTTTCAAATGCATGTTCCTCACAAATTCGTCACAAAGTCAGAAAT
GAAAAGGCAAGAAAAACCTTGGATcacagaaaatattttaaagaaaagcC
AATACAAAGACTTTCTGTATGGCAAATTCATGAAAACAAAATGCACAGAG
GTAGAAAGAGAATATCAAGTTGCTAGACAAGACATAAAGAAGGAGACTAG
AAAAAGCCAGTTCCTTTACATGAGAAACAAATTTTTGAGCACaggaaaaa
acatcaaaaaattctgGGAGAATATCAATGCTTTTTTTGgtagaaaaaaa
acatctaacTATCCAAACACCATGACttataaaaccaaaaacatCAGTGG
AAATTTCAACATTGCCCAAGCCTTCAACAATCACTATTCTGAAGTAGCAC
CTAATCTCATTAAAAAACTACCGAAAAATTCTGACTCGAATGTTTCGAAA
TCAACACCAGAAAACAATTCAagtttcctttttcaaaaaacaacaagata
CGAAATCTTAACCCTCCTTAACAAACTCGACAACAAGAAATCCAAAGATT
TATACGATTTTCCAATTGATATTATTAAAGCAACTGCAGATTTAATTGCT
GAACCACTCTCACACATAATCAATCACTCAATAAAAGGTGGAGTATTCCC
TGAGACACTAAAACATGCAAAAGTTCTCCCTCTGTTTAAAAAAGGACCTC
GAGATGACATCAAAAACTACAGGCCTATCTCCGTACTACCCCTGTTTGAC
AAAATATTCGAACAGGTAATGCACAAGCGACTATCAAAGTTTCTCGACAA
AAACGAATATCTTGACAAAAACCAACATGGTTTTCAAAAGGGTAAGTCCA
C Coding sequence (CDS) from alignment at sc0000001:2836817..2837667 >TCONS_00000386 ID=TCONS_00000386|Name=TCONS_00000386|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at sc0000001:2836817..2837667 (Clytia hemisphaerica)
CTTCTTTTTCAAATGCATGTTCCTCACAAATTCGTCACAAAGTCAGAAAT
GAAAAGGCAAGAAAAACCTTGGATcacagaaaatattttaaagaaaagcC
AATACAAAGACTTTCTGTATGGCAAATTCATGAAAACAAAATGCACAGAG
GTAGAAAGAGAATATCAAGTTGCTAGACAAGACATAAAGAAGGAGACTAG
AAAAAGCCAGTTCCTTTACATGAGAAACAAATTTTTGAGCACaggaaaaa
acatcaaaaaattctgGGAGAATATCAATGCTTTTTTTGgtagaaaaaaa
acatctaacTATCCAAACACCATGACttataaaaccaaaaacatCAGTGG
AAATTTCAACATTGCCCAAGCCTTCAACAATCACTATTCTGAAGTAGCAC
CTAATCTCATTAAAAAACTACCGAAAAATTCTGACTCGAATGTTTCGAAA
TCAACACCAGAAAACAATTCAagtttcctttttcaaaaaacaacaagata
CGAAATCTTAACCCTCCTTAACAAACTCGACAACAAGAAATCCAAAGATT
TATACGATTTTCCAATTGATATTATTAAAGCAACTGCAGATTTAATTGCT
GAACCACTCTCACACATAATCAATCACTCAATAAAAGGTGGAGTATTCCC
TGAGACACTAAAACATGCAAAAGTTCTCCCTCTGTTTAAAAAAGGACCTC
GAGATGACATCAAAAACTACAGGCCTATCTCCGTACTACCCCTGTTTGAC
AAAATATTCGAACAGGTAATGCACAAGCGACTATCAAAGTTTCTCGACAA
AAACGAATATCTTGACAAAAACCAACATGGTTTTCAAAAGGGTAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000386-exon-sc0000001-1491911889:2836817..2837667 | TCONS_00000386-exon-sc0000001-1491911889:2836817..2837667 | Clytia hemisphaerica | exon |
| TCONS_00000386-exon-sc0000001-1510915933:2836817..2837667 | TCONS_00000386-exon-sc0000001-1510915933:2836817..2837667 | Clytia hemisphaerica | exon |
| TCONS_00000386-exon-sc0000001-1575043694:2836817..2837667 | TCONS_00000386-exon-sc0000001-1575043694:2836817..2837667 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2836817..2837667 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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