transcript:BL97356_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97356_cuf4
Unique Nametranscript:BL97356_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97356_cuf4

>transcript:BL97356_cuf4-protein ID=transcript:BL97356_cuf4-protein|Name=transcript:BL97356_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
MASVQEDVPCDFPPFDVDRDGFSPGVFPPGFLWGAATSAFQIEGAWNEDG
KGPSIKDSWFNHARKAFDGTTAEVTCDSYHRYREDVRILSELGVSHYRFS
ISWSRVFPDGTRDSLNPEGVRYYNNLIDELRARGIVPFVTLYHWDLPQAL
MDKHRGWLDETLVELFNDYARFCFSEFGDRVKHWATFNEPWSEIVMGSKG
ILAETVGKEGKRGVYAAVRTVLKAHATAWHTYDREFRE
Run BLAST on NCBI

mRNA from alignment at Sc0000041:2040613..2051288-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97356_cuf4 ID=transcript:BL97356_cuf4|Name=transcript:BL97356_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=10676bp|location=Sequence derived from alignment at Sc0000041:2040613..2051288- (Branchiostoma lanceolatum)
AGTAACACTAAAAGCCCGGACATAGGAGAGACTGAATGGTTCCTTGTACA CAAACGCCTAACAACTTCGGAAATGTCGCAACACACACATATATACTCAT GAGGACACTCTGTCTCATTGGACAAAGAAAGAATCTTGGACACAACGACT TTTTTGTAGAGACGGGGGTCGCCATAGACTTTCTGCAACATATTAATCCC TGCTCACCGAATCACGTGTTCTATCTGTATAATATAATGTAACGTCACAG AAGCAGCAGATTAGTCATTCCTTGACTGACTGAGATGATCAGTCGAAAAT TTGGGTAAGTCCAATTTGTTGTGTTGGCAACTATAACCTTGATTCAGAAG TCCCTCATACCCTAGACGAAATAAAGAATCTCACAACATAACTTTAATTT AATGCTCCTCTATCCATTGCAGTGTTCATATTCCATGTACTTATATATAG ACTCATACATATACATATAACGTTATACATTTATATATGTACAGTATTTG TATATTCATATATCACCGCGTGATCAACGAAACTCTGCATTCTGCGATGT GCATTTTGCATGATATATATGTTCTCAAAGTACTGTAATTGTATAGATTT GTTTCGCTCCCGTCACCAGAAGCACTACGTTACCCACAGAGAACACTGGT ATGTACCGAGGTCAGAGTTGATGCACGGTGCAAAGGTTAGTGGAGACCTA GGTCACTCCGATGTGCAGGTGTAAACATTTGTTTTGAGATTAGCATAGGT TACGTAAGGTTCATGCCGTACAATCGGAGTTATCAGGATCAATAGAACGG GTGTCCATTAGCCTTTTATCAGGAGTTCATAAGACCGGGTAACGTTTCAA CAGTCTTTTACGATTAGAATAGTCAGTTTTGAAGATAAACATGGCTTCCG TACAAGAAGACGTTCCTTGTGACTTTCCCCCCTTTGACGTGGACAGGGAC GGTTTCAGCCCAGGTGTGTTCCCGCCGGGATTTCTGTGGGGCGCCGCCAC GTCTGCTTTCCAGGTACGGTTACACATGTTCCCACCACCTATGATGTCCT CCCATATCATACATGTTTTGTTTTTTTACCTTCGCCAAGGAGGTTATGTT TTCAGGAGTGTATCTCTGTCTGAACACGATAACTCGAGAAGGCTTGGATG GGTTGTCGTAATATTTGGTATGTTGGCAGGTCTTGTTTAGACCTGGATAT GCCTAGACGTTGCCCCCCCCCCCCCTAGCGACTTTCTCAGGTACTGCAGC GGAACGTACGGTTATGATATCTCGTTTTGTTACCTGTGTATGTATGTATG TATGTATGTATGTATGTATGTATGTATTTGTGTGTGTGGGGGGGTGTGCG TGTGTGTGTGTATGTATGTATGTATGTATGTGTGTGTGTGTGTACGTAGG TATGTATAAGACCCTCTATCCAGCAACGCCAGGGCCTCCCTGAAATATGA GTACCTGGCAGTGTAGCGCTTTAGGGCTAGCTGGGTAGTTGGCATTCCGG TCAGGTCAGGCATTCTGGGCAATGAATTGTAGGACAGACATCTTTGTTTA CGATCACATCTGTCTAACGATTTCGTTCCTGACCCTGTCTGTCCTTTTCT TTCTGACTGCAGCAGAACACGCCGGCATTCTGTATGTCTAATGTTGGCCT ACAAGCAGATATATAACTCCGGTTAATTACGAAAACACATTTGATTTGAT TTGATTTATTTGACTGTAAAGAAGTACAGCCAGGGCTACCCAACTAGCTG AAGGCTATTACAAAGGGTTAGCCCTGGGAACAGTATTCAAAGTTCAATAC AAACTTTCACAAAGCACGTCAAGGCGTACACAAAACGCAAAGGTAAAATA CATAGAAGAAACACATTTGCTTGCCTGACTTGACTGATCGTGACTGCACT AGTGACTTTTTCCGTGACTATGTCTTATGCCTCATTTCGGCGCGTCACGC CCCTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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GATTGTGAGACAAAACGTTTCGAAGGGAAATTATGAATGGCGTAGAAAAC ATCTGCCATTTATACGGAGAGTTCCATAGGGCTCCACTATCAAGTGAGCA CCAACATGGCCGCCAGTGCTCGTTGCTAGGGGGAGGGTCACGTGACTGAA TACGCCCTATAGCCGCTCACAGTCAGTACCCGGATGTCTAAGGCTTACCA ATAACTGTAAATGCAGAAATGTTCGCGGTGGTTTGATGTTTGCGTTTTTT GCGATGAACTCTTCAGCGCGAACTTAGAACCACCGCGAACACTACATTTC CACTCTTCCGCGAAATAAGATCCCCGCGAAAATTTCTGCATTTACAGTAC TCCCTTTCCGAGTAGGCACAGTAAGCTTTGTCTGCTAAGGCCGATTATAA TTCGTCCTCAGCATTTCAGTTGTGCCGTTGTGATGGACATGAAAAATGGA GGTATAGTTTTTGGCGTGTCTGTATGTGTTTGTGTGTGTTTCCGGTTTTT GTATCTTTCGTCCTGGGAGTGCTATTTTTTTGACATTTTCTGTCATGCAA TTAGCAATACACTGTTTCCGTGACGTGACGTCATGCAGATAAAACACGTG ATTCGGTGAGCAGAAGGCCATATGTTGCAGAATGTCTATAGCACCCCCGC ACTGCAGAAGTTTGACTTTTACCGATAGTTTAGTCAGAGACACTGAGATT GCATATGAACATTTAGGACAAATGATGTTGGACAGGGGGATATGGAGTGA TGTATGTACTTATTTAGTCCCGGCCGATGGCCGATAGATAGATAGATAGT AACACTAAAAGCCCGGACATAGGAGAGACTGAATGGTTCCTTGTACACAA ACGCCTAACAACTTCGGAAATGTCGCAACACACACATATATACTCATGAG GACACTCTGTCTCATTGGACAAAGAAAGAATCTTGGACACAACGACTTTT TTGTAGAGACGGGGGTCGCCATAGACTTTCTGCAACATATTAATCCCCGC TCACCGAATCACGTGTTCTATCTGTATAATATAATGTAACGTCACAGAAG CAGCAGATTAGTCATTCCTTGACTGACTGAGATGATCAGTCGAAAATTTG GGTAAGTCCAATTTGTTGTGTTGGCAACTATAACCTTGATTCAGAAGTCC CTCATACCCTAGACGAAATAAAGAATCTCACAACATAACTTTAATTTAAT GCTCCTCTATCCATTGCAGTGTTCATATTCCATGTACTTATATATAGACT CATACATATACATATAACGTTATACATTTATATATGTACAGTATTTGTAT ATTCATATATCACCGCGTGATCAACGAAACTCTGCATTCTGCGATGTGCA TTTTGCATGATATATATGTTCTCAAAGTACTGTAATTGTATAGATTTGTT TCGCTCCCGTCACCAGAAGCACTACGTTACCCACAGAGAACACTGGTATG TACCGAGGTCAGAGTTGATGCACGGTGCAAAGGTTAGTGGAGACCTAGGT CACTCCGATGTGCAGGTGTAAACATTTGTTTTGAGATTAGCATAGGTTAC GTAAGGTTCATGCCGTACAATCGGAGTTATCAGGATCAATAGAACGGGTG TCCATTAGCCTTTTATCAGGAGTTCATAAGACCGGGTAACGTTTCAACAG TCTTTTACGATTAGAATAGTCAGTTTTGAAGATAAACATGGCTTCCGTAC AAGAAGACGTTCCTTGTGACTTTCCCCCCTTTGACGTGGACAGGGACGGT TTCAGCCCAGGTGTGTTCCCGCCGGGATTTCTGTGGGGCGCCGCCACGTC TGCTTTCCAGGTACGGTTACACATGTTCCCACCACCTATGATGTCCTCCC ATATCATACATGTTTTGTTTTTTTACCTTCGCCAAGGAGGTTATGTTTTC AGGAGTGTATCTCTGTCTGAACACGATAACTCGAGAAGGCTTGGATGGGT TGTCGTAATATTTGGTATGTTGGCAGGTCTTGTTTAGACCTGGATATGCC TAGACGTTTGCCCCCCCCCCCCTAGCGACTTTCTCAGGTACTGCAGCGGA ACGTACGGTTATGATATCTCGTTTTGTTACCTGTGTATGTATGTATGTAT GTATGTATGTATGTATGTATGTATTTGTGTGTGTGGGGGGGTGTGCGTGT GTGTGTGTATGTATGTATGTATGTATGTGTGTGTGTGTGTACGTAGGTAT GTATAAGACCCTCTATCCAGCAACGCCAGGGCCTCCCTGAAATATGAGTA CCTGGCAGTGTAGCGCTTTAGGGCTAGCTGGGTAGTTGGCATTCCGGTCA GGTCAGGCATTCTGGGCAATGAATTGTAGGACAGACATCTTTGTTTACGA TCACATCTGTCTAACGATTTCGTTCCTGACCCTGTCTGTCCTTTTCTTTC TGACTGCAGCAGAACACGCCGGCATTCTGTATGTCTAATGTTGGCCTACA AGCAGATATATAACTCCGGTTAATTACGAAAACACATTTGATTTGATTTG ATTTATTTGACTGTAAAGAAGTACAGCCAGGGCTACCCAACTAGCTGAAG GCTATTACAAAGGGTTAGCCCTGGGAACAGTATTCAAAGTTCAATACAAA CTTTCACAAAACACGTCAAGGCGTACACAAAACGCAAAGGTAAAATACAT AGAAGAAACACATTTGCTTGCCTGACTTGACTGATCGTGACTGCACTAGT GACTTTTTCCGTGACTATGTCTTATGCCTCATTTCGGCGCGTCACGCCCC TGTCACCCAGACGACGAGCTTCGGCCTTTTTTGTTGATAGCCAGACGGTC ATCGAATTAAATACTATTACTCTCTTGTATCTGACCTACTGCATTTAGCC CCAATGGGGCATGGATATGCAATAAATGTCATCGTCATTTAAAAGATAAA CGCCAGACTCGAGAGTATCTTTTCATTTATTCATTTATTTCTGTTTTCTT TAAACATGGTAGGCGTGCTCAGTGCTTAAAACACTGCTTTGCAGACGTGC CCTGTACAGAATAACATAAACTTAGAAATAAGAGAAACTAAGAAACAAAA AAACAGCCCACAAAGATAACAATATATACACAACCGAGCGTCAATCATAA TCATAAACCGTAAATCAAAGAGATCAGCAGTGATGTTTAATTAGCCTTTT AAAAGATAGGCCAGGCGTGGCCACCCTGACTGTGGCAGACATATCGATCA TTCCATGCAAATGCACCCCTGTAAACAAACAATGGCTAAATTCTAGTCTA GCTTTAGGAAGTTGTGATGATATGTTTAAATTATGACTTGCTTGCTGTAT GAGATGTTCTGTTTGTAATTTTTCTGGTACCTGTTGATGGATTTATTTTA AGGCGGATTAAAGAGGATGCATTTGCCGTCCAGATTCCAGTAAAAATATA TTACAGATTTTTGTGTTCATTTTTCCATTCAGATAGAAGGAGCGTGGAAT GAGGACGGCAAAGGTCCGTCCATAAAGGATTCGTGGTTCAACCACGCGCG TAAAGCCTTCGATGGAACAACGGCAGAAGTGACGTGTGACAGTTACCACA GGCCAGTATAAATCTACACCAAAGCCTCATGATCACTGGACCTGCGGCAC GCTGGCGGCGTCGCTGTGTCCTGCACTGGATTCGTGTTACTTGATTTTAT AATGGGAATATCATTCAAAACGTGTAAATTCGNCATTCAAAACGTGTAAT TTTGACCGCAACAAAACACATAAAGCTTAAAAAGATTCGTTTTTTGCCGA TGAAAGTCATTGAGTGCTTTGTCAATCCGATCGGCCGCAGCGCCGCCGCC AGCATGCCACAGGTCCAGTGAGAGGGGGGCTTTATGGAGAAGCCACTAGT ATTACGATGATAGACTTAGTTTNCTAGTATTACGGTGATAGACTTAGTTT AAGGTAGTAGAGTCTAGGGCGCACTGGACAGAGCAACATGAAGAGCCTAA GGGGAGTAAGGGGCAGCTCCTAGCCTAGTAGAAAGCACTCAGGCAGGTAG GCACTAGCATAAAAAAATAGTACTGGTAGTATGCCAACATAAGCATGAAA GGTCATCTGAGTTGGTAAAATGCATTATGAAAAATCAAAATACTTTTTTT CTACTCATGTACTCATCGGAAGTTTCGACTGGTTCTCCAGATTTCCTCGT CTTTCTGATCCAATCACTCAGAGCTTTATGTGACGTCAGCAATGGGTCCA AGGTTGTTGGGAGTCTATATCGCCCCGCGTCTCGGTTGAGAGAAGGCCGA TGTAGATTGCCTCCTTTACTCACAAAGTAGACATGTGTACCAACATGGTT TGATCTCAATTGTCATGTACCTTACAATAGGCTCCCTGGCAAAAAATTGT ATTCACCTTTTGTATTAATCTCCAAGCAGATCTACACCGATGCAAAAATC GTTTAAACCTGACGGACCGTCTCTGGCTAGCTTATACGATTTTTGCACCG GTGTAGATCTGCTTGGAAATTACTTCTGTATGGTCATTTTTACTGACTGT AGGTACCGAGAAGACGTCCGTATCTTGTCGGAGCTAGGCGTCTCCCACTA CCGCTTCTCAATCTCCTGGTCCCGGGTCTTCCCGGACGGCACCAGGGACT CCCTCAACCCCGAAGGTGTCCGCTACTACAACAACCTCATCGACGAGCTG CGTGCGCGCGGCATCGTACCGTTCGTCACCCTGTACCACTGGGACTTGCC GCAAGCTCTCATGGACAAGCATCGCGGCTGGCTGGACGAAACGCTGGTGG AACTCTTCAACGACTACGCGAGGTTCTGTTTCTCGGAGTTCGGGGACCGC GTCAAGCACTGGGCGACGTTTAACGAGCCGTGGTCGGAGATTGTTATGGG AAGTAAGGGCATACTGGCGGAGACTGTCGGTAAGGAGGGGAAGCGGGGGG TGTACGCCGCGGTGAGGACCGTTCTGAAGGCTCACGCGACGGCGTGGCAC ACTTACGACAGGGAGTTCCGTGAGAA

Coding sequence (CDS) from alignment at Sc0000041:2040613..2051288-

>transcript:BL97356_cuf4 ID=transcript:BL97356_cuf4|Name=transcript:BL97356_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2142bp|location=Sequence derived from alignment at Sc0000041:2040613..2051288- (Branchiostoma lanceolatum)
ATGGCTTCCGTACAAGAAGACGTTCCTTGTGACTTTCCCCCCTTTGACGT
GGACAGGGACGGTTTCAGCCCAGGTGTGTTCCCGCCGGGATTTCTGTGGG
GCGCCGCCACGTCTGCTTTCCAGATAGAAGGAGCGTGGAATGAGGACGGC
AAAGGTCCGTCCATAAAGGATTCGTGGTTCAACCACGCGCGTAAAGCCTT
CGATGGAACAACGGCAGAAGTGACGTGTGACAGTTACCACAGGTACCGAG
AAGACGTCCGTATCTTGTCGGAGCTAGGCGTCTCCCACTACCGCTTCTCA
ATCTCCTGGTCCCGGGTCTTCCCGGACGGCACCAGGGACTCCCTCAACCC
CGAAGGTGTCCGCTACTACAACAACCTCATCGACGAGCTGCGTGCGCGCG
GCATCGTACCGTTCGTCACCCTGTACCACTGGGACTTGCCGCAAGCTCTC
ATGGACAAGCATCGCGGCTGGCTGGACGAAACGCTGGTGGAACTCTTCAA
CGACTACGCGAGGTTCTGTTTCTCGGAGTTCGGGGACCGCGTCAAGCACT
GGGCGACGTTTAACGAGCCGTGGTCGGAGATTGTTATGGGAAGTAAGGGC
ATACTGGCGGAGACTGTCGGTAAGGAGGGGAAGCGGGGGGTGTACGCCGC
GGTGAGGACCGTTCTGAAGGCTCACGCGACGGCGTGGCACACTTACGACA
GGGAGTTCCGTGAGATGGCTTCCGTACAAGAAGACGTTCCTTGTGACTTT
CCCCCCTTTGACGTGGACAGGGACGGTTTCAGCCCAGGTGTGTTCCCGCC
GGGATTTCTGTGGGGCGCCGCCACGTCTGCTTTCCAGATAGAAGGAGCGT
GGAATGAGGACGGCAAAGGTCCGTCCATAAAGGATTCGTGGTTCAACCAC
GCGCGTAAAGCCTTCGATGGAACAACGGCAGAAGTGACGTGTGACAGTTA
CCACAGGTACCGAGAAGACGTCCGTATCTTGTCGGAGCTAGGCGTCTCCC
ACTACCGCTTCTCAATCTCCTGGTCCCGGGTCTTCCCGGACGGCACCAGG
GACTCCCTCAACCCCGAAGGTGTCCGCTACTACAACAACCTCATCGACGA
GCTGCGTGCGCGCGGCATCGTACCGTTCGTCACCCTGTACCACTGGGACT
TGCCGCAAGCTCTCATGGACAAGCATCGCGGCTGGCTGGACGAAACGCTG
GTGGAACTCTTCAACGACTACGCGAGGTTCTGTTTCTCGGAGTTCGGGGA
CCGCGTCAAGCACTGGGCGACGTTTAACGAGCCGTGGTCGGAGATTGTTA
TGGGAAGTAAGGGCATACTGGCGGAGACTGTCGGTAAGGAGGGGAAGCGG
GGGGTGTACGCCGCGGTGAGGACCGTTCTGAAGGCTCACGCGACGGCGTG
GCACACTTACGACAGGGAGTTCCGTGAGATGGCTTCCGTACAAGAAGACG
TTCCTTGTGACTTTCCCCCCTTTGACGTGGACAGGGACGGTTTCAGCCCA
GGTGTGTTCCCGCCGGGATTTCTGTGGGGCGCCGCCACGTCTGCTTTCCA
GATAGAAGGAGCGTGGAATGAGGACGGCAAAGGTCCGTCCATAAAGGATT
CGTGGTTCAACCACGCGCGTAAAGCCTTCGATGGAACAACGGCAGAAGTG
ACGTGTGACAGTTACCACAGGTACCGAGAAGACGTCCGTATCTTGTCGGA
GCTAGGCGTCTCCCACTACCGCTTCTCAATCTCCTGGTCCCGGGTCTTCC
CGGACGGCACCAGGGACTCCCTCAACCCCGAAGGTGTCCGCTACTACAAC
AACCTCATCGACGAGCTGCGTGCGCGCGGCATCGTACCGTTCGTCACCCT
GTACCACTGGGACTTGCCGCAAGCTCTCATGGACAAGCATCGCGGCTGGC
TGGACGAAACGCTGGTGGAACTCTTCAACGACTACGCGAGGTTCTGTTTC
TCGGAGTTCGGGGACCGCGTCAAGCACTGGGCGACGTTTAACGAGCCGTG
GTCGGAGATTGTTATGGGAAGTAAGGGCATACTGGCGGAGACTGTCGGTA
AGGAGGGGAAGCGGGGGGTGTACGCCGCGGTGAGGACCGTTCTGAAGGCT
CACGCGACGGCGTGGCACACTTACGACAGGGAGTTCCGTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97356gene:BL97356Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97356_cuf4transcript:BL97356_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97356_cuf4-E1BL97356_cuf4-E1-1564476830-207038Branchiostoma lanceolatumexon
BL97356_cuf4-E2BL97356_cuf4-E2-1564476830-207035Branchiostoma lanceolatumexon
BL97356_cuf4-E3BL97356_cuf4-E3-1564476830-207033Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000041genomeSc0000041:2040613..2051288 -
Properties
Property NameValue
Transcript idBL97356_cuf4
Biotypeprotein_coding