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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96993_cuf7 >transcript:BL96993_cuf7-protein ID=transcript:BL96993_cuf7-protein|Name=transcript:BL96993_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=355bp
QVTWQPVSSEFQNGVIGGYRLKLDGQDCTYVSGAENRAATIGGLRPWTEY
LVEVAAVNVALNVTGLYSAARSGRTLEDAPGPISGLTAEVLSWGSVRLSW
QPPATPNGVITGYVVSYIPVDRHFPTTQEPTTVQTTESSQNGTEEEEPTD
TSASRVTRDTGPTFDLDLENATLITMETSEQSALLEGLYPSTVYHVQVVA
RTGAGAGVTPVNITATTLPWYPIIHPPTTPEPPTTRTISTPDKAVTETAS
PPPGGSNAALLQPHDVPIVVGVCLTGGILLLAIIGWAGWKCRHNRAKARR
RGSYRKLKKLYIHDSFRNSFVNAFRNTYVTVSLTIEVLKNLYCETENSLQ
IIKDY Run BLAST on NCBI mRNA from alignment at Sc0000004:6741465..6744970- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96993_cuf7 ID=transcript:BL96993_cuf7|Name=transcript:BL96993_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=3506bp|location=Sequence derived from alignment at Sc0000004:6741465..6744970- (Branchiostoma lanceolatum)
TACAAGTCACCTGGCAGGTGAGAAAAGATATCTGTCACACCAAGTATTTT
TTTTACTTCATTTTTGAGACCAGAGAGCCATAATAGTAGCATTACTACTA
ACAGTAACTGTAGTGTAGAATTTGCAGAAAATTTGACAGGTCTAGATTGT
TTTAGTTGATTATCTGTGGGCAGGGTTGGATGCCAGGGTTTCGAGGTTGG
AGGGGTTGTATTTGTCATTCCAGATGGTGACATAAGGCCGGCAGCCATGT
GTGTAGGGGTCCTCCTAAGCTTTCGGCATAAGTCTAAAGCATCAGACCCC
CCCCTTGAAAATAATTTCATCAGGTTGGGGGAACAGACACCAAAACGTCA
GCAGGTGAGAATGACTGATGGTGAAAAAAAGAATATCCTATATCCAGTAT
AGCTTGGGGTGACCTAATGTTTGAACGAAGTTGACAGACATAGTTTTTAA
AACCTTTTCAGCCTGTGAGCTCAGAGTTCCAGAACGGTGTGATTGGCGGA
TACCGCTTGAAGCTGGATGGCCAAGATTGCACGTACGTTAGCGGCGCCGA
GAACAGGGCCGCCACGATCGGCGGGCTGAGGCCGTGGACCGAGTACCTGG
TGGAGGTGGCCGCTGTGAATGTCGCGCTGAACGTGACGGGACTGTACAGC
GCCGCACGGAGTGGCAGGACACTGGAGGATGGTGAGATTGGAATGAATAC
CGGCCACTTTAGATTTGGGAACACTTCTTTAGCAATCCTTGATGTCAGAT
ATTCCAGACCTGTGACTTCTTCCTCTGTAATGTCCATCTGACTGTGTGAA
GAATCGGCAATTACTGACATGTATCGGGTCAACCGACTGTAAGGTTTTGG
GACCATCGCACACCGGGGCATGCCCCTACTGGTTTTTGAAAGGTGTGGTG
GGTTCTTAAATGTGCGCGGGGTGTGTCTCTCCCTAAACACGGGACCTCCA
TTTAATGTCCTATGTATCTAAGGGATGTCACATTATGCATATTACATGAT
TTTAGAGAAAACATCAGTCAGATGTAGACTGAGATAAAAGGATGATTCAA
AGTTTTCAGTAGCTTTTTAATGTTTTTAATGGGGTCTTGCCTCAAGACAC
AATAACACCAAAAACCCACAATTTAAATCCCGAGTGCCTTAATTTCTGAA
TTTTTCAGCTCAGTTTGTCCTGAATACTCCCTGGTACTAGGGATTGCCCT
AAAGGCTTTTTTTATACCTGAACATATACAGTATGATAACAGAATTTTTC
TTTCATCTCAACAGCCCCGGGCCCCATCTCAGGCCTTACTGCAGAGGTCC
TCTCCTGGGGCTCCGTACGGTTGTCATGGCAACCCCCGGCCACACCCAAT
GGCGTCATCACAGGCTACGTTGTCAGCTACATCCCCGTAGATCGACACTT
CCCAACAACACAGGAGCCGACAACGGTCCAAACGACGGAAAGCTCCCAGA
ATGGAACTGAAGAAGAGGAGCCAACTGGTAGGGATCCTTTTTCTTAATAT
ATTCCTTATTTGAACTTATACAGTCACTGTGCTACATTTTCACCATTACT
AAAGAGAAGCTGAATGTATGTGTATGTCTGTATGGTACACGTTTTTGTTG
TGACCTGTACTTTAGCTCAGTTGGGCACAACTTCATTGACTTTTTTTCAA
ACTAAGCTACTGATAGACTCAGGTAGAATACTACATGGACTGATAGAACT
TATTCCTGGATGATTCTCATTCCATCAATATTTGATGAGGCTGAAAAGAA
TAAACTGATGCTTGTAATCTGTAGTTCAGAAGACAGTTGCACGAAATATC
AGTTCTACACAAAATTCTTGATCTGAAGTCACCTTAAAATCTTAAAAATT
TGCATGCATTCACAACTTTTTGATGAAACATCTATTAAGTACTGCTCACA
AAACTAACAAATGTTGCTTGAATGAAAAGACCTTCATTTTTTAGTCAAGT
CAAGTCTTACTCATTTAAGGTGCCTCACATTATGTTTGACTTCTGCCACA
GACACCTCTGCCTCAAGAGTGACCCGAGACACAGGTCCCACCTTTGACCT
TGACCTGGAGAACGCGACCTTAATCACCATGGAGACGAGTGAGCAGAGTG
CGCTGCTGGAGGGCCTGTACCCCAGCACTGTGTACCATGTACAGGTGGTG
GCCAGGACTGGGGCTGGGGCCGGGGTTACACCTGTCAACATCACAGCTAC
TACATGTGAGTAGAGCTCTTCCATTTTATCATTAGACAGTTCTTTTAAGT
TAAGATTTTTCGTCCAAATTCAAAATCTTGCAGCAAATCTTATGAGCATA
AATAATTTTTAATGTGATCCTTGGGGGTCTATAACACATTACTGTTCAAT
ACCATGTAAAAGTGGTGGGCAAGACTGGTACGGGTTAAAATTGATATTAC
AGCTACTACTTGTAAGTAAAAGTTTCTCAGTCATTTAGTTTCAAATTGTT
CTTGGTGCTAATATAATTGTGGTTCTACCAGTTATCGAAACTTATCATAA
TCCAAGCTGTTAAAAGCAAGTTGCAATTTTGCAAGACAAAAATTCTGCTA
ACAATTAGGGAGAAAATAATTGAAAATGGGGCTGAAATGGCAACCACAGT
TGTTGATACATACATTGTTAAAGATGGCAAAATAAAAGAAATACCCATAT
AGTGCATTTTTGTCTTAAATTTGTCTTATATTCAAGTGACTTTCGGAAAC
ATAAAATTTAACACTTTTTTCTGTCGTGTCCCCCCAGTGCCCTGGTACCC
CATCATCCATCCACCCACCACTCCTGAACCTCCCACAACAAGAACCATCT
CAACCCCCGACAAGGCTGTCACAGAAACCGCCTCCCCTCCCCCTGGAGGT
AGCAATGCAGCTCTTCTCCAGCCTCACGACGTCCCCATAGTGGTGGGGGT
GTGTTTAACAGGTGGAATTCTCCTCCTGGCGATTATCGGGTGGGCCGGGT
GGAAGTGTCGTCACAACCGCGCCAAGGCAAGACGTCGAGGATCCTACCGT
AAGTTGAAGAAGTTGTACATCCACGATTCCTTCAGGAATTCTTACGTCAA
CGCCTTACGGTATCCTTAATTATTGAAGCTCTGAAAGATCTACTGTAAAA
TTGGAAATTCATGGTAGATATTCAAAAACTATTGAAATTTCCTCATTTCA
TCAGTATTTTACCGTAAGTTGAAGAAGTTGTACATCCACGATTCCTTCAG
GAATTCTTATGTCAACGCCTTACGGTATCCCTGATTACTGAAGCGCTGAT
ATATCTACTCCAAAATTGGAAATTTATGGCAGATTATCAAAAACTATAAT
TATTACAATTTCTTCATTTCGTCAGTTTTCTACCGTAAGTTGAACAAGTT
GTACATCCACGATTCCTTCAGGAATTCTTTCGTCAACGCCTTCAGGAATA
CTTACGTTACGGTATCCCTGACTATCGAAGTGCTGAAAAATCTGTACTGT
GAAACTGAAAATTCATTGCAGATTATAAAAGACTATTGAAATTTCCTTAT
TTTGGC Coding sequence (CDS) from alignment at Sc0000004:6741465..6744970- >transcript:BL96993_cuf7 ID=transcript:BL96993_cuf7|Name=transcript:BL96993_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=6408bp|location=Sequence derived from alignment at Sc0000004:6741465..6744970- (Branchiostoma lanceolatum)
CAAGTCACCTGGCAGCCTGTGAGCTCAGAGTTCCAGAACGGTGTGATTGG
CGGATACCGCTTGAAGCTGGATGGCCAAGATTGCACGTACGTTAGCGGCG
CCGAGAACAGGGCCGCCACGATCGGCGGGCTGAGGCCGTGGACCGAGTAC
CTGGTGGAGGTGGCCGCTGTGAATGTCGCGCTGAACGTGACGGGACTGTA
CAGCGCCGCACGGAGTGGCAGGACACTGGAGGATGCCCCGGGCCCCATCT
CAGGCCTTACTGCAGAGGTCCTCTCCTGGGGCTCCGTACGGTTGTCATGG
CAACCCCCGGCCACACCCAATGGCGTCATCACAGGCTACGTTGTCAGCTA
CATCCCCGTAGATCGACACTTCCCAACAACACAGGAGCCGACAACGGTCC
AAACGACGGAAAGCTCCCAGAATGGAACTGAAGAAGAGGAGCCAACTGAC
ACCTCTGCCTCAAGAGTGACCCGAGACACAGGTCCCACCTTTGACCTTGA
CCTGGAGAACGCGACCTTAATCACCATGGAGACGAGTGAGCAGAGTGCGC
TGCTGGAGGGCCTGTACCCCAGCACTGTGTACCATGTACAGGTGGTGGCC
AGGACTGGGGCTGGGGCCGGGGTTACACCTGTCAACATCACAGCTACTAC
ATTGCCCTGGTACCCCATCATCCATCCACCCACCACTCCTGAACCTCCCA
CAACAAGAACCATCTCAACCCCCGACAAGGCTGTCACAGAAACCGCCTCC
CCTCCCCCTGGAGGTAGCAATGCAGCTCTTCTCCAGCCTCACGACGTCCC
CATAGTGGTGGGGGTGTGTTTAACAGGTGGAATTCTCCTCCTGGCGATTA
TCGGGTGGGCCGGGTGGAAGTGTCGTCACAACCGCGCCAAGGCAAGACGT
CGAGGATCCTACCGTAAGTTGAAGAAGTTGTACATCCACGATTCCTTCAG
GAATTCTTTCGTCAACGCCTTCAGGAATACTTACGTTACGGTATCCCTGA
CTATCGAAGTGCTGAAAAATCTGTACTGTGAAACTGAAAATTCATTGCAG
ATTATAAAAGACTATTGACAAGTCACCTGGCAGCCTGTGAGCTCAGAGTT
CCAGAACGGTGTGATTGGCGGATACCGCTTGAAGCTGGATGGCCAAGATT
GCACGTACGTTAGCGGCGCCGAGAACAGGGCCGCCACGATCGGCGGGCTG
AGGCCGTGGACCGAGTACCTGGTGGAGGTGGCCGCTGTGAATGTCGCGCT
GAACGTGACGGGACTGTACAGCGCCGCACGGAGTGGCAGGACACTGGAGG
ATGCCCCGGGCCCCATCTCAGGCCTTACTGCAGAGGTCCTCTCCTGGGGC
TCCGTACGGTTGTCATGGCAACCCCCGGCCACACCCAATGGCGTCATCAC
AGGCTACGTTGTCAGCTACATCCCCGTAGATCGACACTTCCCAACAACAC
AGGAGCCGACAACGGTCCAAACGACGGAAAGCTCCCAGAATGGAACTGAA
GAAGAGGAGCCAACTGACACCTCTGCCTCAAGAGTGACCCGAGACACAGG
TCCCACCTTTGACCTTGACCTGGAGAACGCGACCTTAATCACCATGGAGA
CGAGTGAGCAGAGTGCGCTGCTGGAGGGCCTGTACCCCAGCACTGTGTAC
CATGTACAGGTGGTGGCCAGGACTGGGGCTGGGGCCGGGGTTACACCTGT
CAACATCACAGCTACTACATTGCCCTGGTACCCCATCATCCATCCACCCA
CCACTCCTGAACCTCCCACAACAAGAACCATCTCAACCCCCGACAAGGCT
GTCACAGAAACCGCCTCCCCTCCCCCTGGAGGTAGCAATGCAGCTCTTCT
CCAGCCTCACGACGTCCCCATAGTGGTGGGGGTGTGTTTAACAGGTGGAA
TTCTCCTCCTGGCGATTATCGGGTGGGCCGGGTGGAAGTGTCGTCACAAC
CGCGCCAAGGCAAGACGTCGAGGATCCTACCGTAAGTTGAAGAAGTTGTA
CATCCACGATTCCTTCAGGAATTCTTTCGTCAACGCCTTCAGGAATACTT
ACGTTACGGTATCCCTGACTATCGAAGTGCTGAAAAATCTGTACTGTGAA
ACTGAAAATTCATTGCAGATTATAAAAGACTATTGACAAGTCACCTGGCA
GCCTGTGAGCTCAGAGTTCCAGAACGGTGTGATTGGCGGATACCGCTTGA
AGCTGGATGGCCAAGATTGCACGTACGTTAGCGGCGCCGAGAACAGGGCC
GCCACGATCGGCGGGCTGAGGCCGTGGACCGAGTACCTGGTGGAGGTGGC
CGCTGTGAATGTCGCGCTGAACGTGACGGGACTGTACAGCGCCGCACGGA
GTGGCAGGACACTGGAGGATGCCCCGGGCCCCATCTCAGGCCTTACTGCA
GAGGTCCTCTCCTGGGGCTCCGTACGGTTGTCATGGCAACCCCCGGCCAC
ACCCAATGGCGTCATCACAGGCTACGTTGTCAGCTACATCCCCGTAGATC
GACACTTCCCAACAACACAGGAGCCGACAACGGTCCAAACGACGGAAAGC
TCCCAGAATGGAACTGAAGAAGAGGAGCCAACTGACACCTCTGCCTCAAG
AGTGACCCGAGACACAGGTCCCACCTTTGACCTTGACCTGGAGAACGCGA
CCTTAATCACCATGGAGACGAGTGAGCAGAGTGCGCTGCTGGAGGGCCTG
TACCCCAGCACTGTGTACCATGTACAGGTGGTGGCCAGGACTGGGGCTGG
GGCCGGGGTTACACCTGTCAACATCACAGCTACTACATTGCCCTGGTACC
CCATCATCCATCCACCCACCACTCCTGAACCTCCCACAACAAGAACCATC
TCAACCCCCGACAAGGCTGTCACAGAAACCGCCTCCCCTCCCCCTGGAGG
TAGCAATGCAGCTCTTCTCCAGCCTCACGACGTCCCCATAGTGGTGGGGG
TGTGTTTAACAGGTGGAATTCTCCTCCTGGCGATTATCGGGTGGGCCGGG
TGGAAGTGTCGTCACAACCGCGCCAAGGCAAGACGTCGAGGATCCTACCG
TAAGTTGAAGAAGTTGTACATCCACGATTCCTTCAGGAATTCTTTCGTCA
ACGCCTTCAGGAATACTTACGTTACGGTATCCCTGACTATCGAAGTGCTG
AAAAATCTGTACTGTGAAACTGAAAATTCATTGCAGATTATAAAAGACTA
TTGACAAGTCACCTGGCAGCCTGTGAGCTCAGAGTTCCAGAACGGTGTGA
TTGGCGGATACCGCTTGAAGCTGGATGGCCAAGATTGCACGTACGTTAGC
GGCGCCGAGAACAGGGCCGCCACGATCGGCGGGCTGAGGCCGTGGACCGA
GTACCTGGTGGAGGTGGCCGCTGTGAATGTCGCGCTGAACGTGACGGGAC
TGTACAGCGCCGCACGGAGTGGCAGGACACTGGAGGATGCCCCGGGCCCC
ATCTCAGGCCTTACTGCAGAGGTCCTCTCCTGGGGCTCCGTACGGTTGTC
ATGGCAACCCCCGGCCACACCCAATGGCGTCATCACAGGCTACGTTGTCA
GCTACATCCCCGTAGATCGACACTTCCCAACAACACAGGAGCCGACAACG
GTCCAAACGACGGAAAGCTCCCAGAATGGAACTGAAGAAGAGGAGCCAAC
TGACACCTCTGCCTCAAGAGTGACCCGAGACACAGGTCCCACCTTTGACC
TTGACCTGGAGAACGCGACCTTAATCACCATGGAGACGAGTGAGCAGAGT
GCGCTGCTGGAGGGCCTGTACCCCAGCACTGTGTACCATGTACAGGTGGT
GGCCAGGACTGGGGCTGGGGCCGGGGTTACACCTGTCAACATCACAGCTA
CTACATTGCCCTGGTACCCCATCATCCATCCACCCACCACTCCTGAACCT
CCCACAACAAGAACCATCTCAACCCCCGACAAGGCTGTCACAGAAACCGC
CTCCCCTCCCCCTGGAGGTAGCAATGCAGCTCTTCTCCAGCCTCACGACG
TCCCCATAGTGGTGGGGGTGTGTTTAACAGGTGGAATTCTCCTCCTGGCG
ATTATCGGGTGGGCCGGGTGGAAGTGTCGTCACAACCGCGCCAAGGCAAG
ACGTCGAGGATCCTACCGTAAGTTGAAGAAGTTGTACATCCACGATTCCT
TCAGGAATTCTTTCGTCAACGCCTTCAGGAATACTTACGTTACGGTATCC
CTGACTATCGAAGTGCTGAAAAATCTGTACTGTGAAACTGAAAATTCATT
GCAGATTATAAAAGACTATTGACAAGTCACCTGGCAGCCTGTGAGCTCAG
AGTTCCAGAACGGTGTGATTGGCGGATACCGCTTGAAGCTGGATGGCCAA
GATTGCACGTACGTTAGCGGCGCCGAGAACAGGGCCGCCACGATCGGCGG
GCTGAGGCCGTGGACCGAGTACCTGGTGGAGGTGGCCGCTGTGAATGTCG
CGCTGAACGTGACGGGACTGTACAGCGCCGCACGGAGTGGCAGGACACTG
GAGGATGCCCCGGGCCCCATCTCAGGCCTTACTGCAGAGGTCCTCTCCTG
GGGCTCCGTACGGTTGTCATGGCAACCCCCGGCCACACCCAATGGCGTCA
TCACAGGCTACGTTGTCAGCTACATCCCCGTAGATCGACACTTCCCAACA
ACACAGGAGCCGACAACGGTCCAAACGACGGAAAGCTCCCAGAATGGAAC
TGAAGAAGAGGAGCCAACTGACACCTCTGCCTCAAGAGTGACCCGAGACA
CAGGTCCCACCTTTGACCTTGACCTGGAGAACGCGACCTTAATCACCATG
GAGACGAGTGAGCAGAGTGCGCTGCTGGAGGGCCTGTACCCCAGCACTGT
GTACCATGTACAGGTGGTGGCCAGGACTGGGGCTGGGGCCGGGGTTACAC
CTGTCAACATCACAGCTACTACATTGCCCTGGTACCCCATCATCCATCCA
CCCACCACTCCTGAACCTCCCACAACAAGAACCATCTCAACCCCCGACAA
GGCTGTCACAGAAACCGCCTCCCCTCCCCCTGGAGGTAGCAATGCAGCTC
TTCTCCAGCCTCACGACGTCCCCATAGTGGTGGGGGTGTGTTTAACAGGT
GGAATTCTCCTCCTGGCGATTATCGGGTGGGCCGGGTGGAAGTGTCGTCA
CAACCGCGCCAAGGCAAGACGTCGAGGATCCTACCGTAAGTTGAAGAAGT
TGTACATCCACGATTCCTTCAGGAATTCTTTCGTCAACGCCTTCAGGAAT
ACTTACGTTACGGTATCCCTGACTATCGAAGTGCTGAAAAATCTGTACTG
TGAAACTGAAAATTCATTGCAGATTATAAAAGACTATTGACAAGTCACCT
GGCAGCCTGTGAGCTCAGAGTTCCAGAACGGTGTGATTGGCGGATACCGC
TTGAAGCTGGATGGCCAAGATTGCACGTACGTTAGCGGCGCCGAGAACAG
GGCCGCCACGATCGGCGGGCTGAGGCCGTGGACCGAGTACCTGGTGGAGG
TGGCCGCTGTGAATGTCGCGCTGAACGTGACGGGACTGTACAGCGCCGCA
CGGAGTGGCAGGACACTGGAGGATGCCCCGGGCCCCATCTCAGGCCTTAC
TGCAGAGGTCCTCTCCTGGGGCTCCGTACGGTTGTCATGGCAACCCCCGG
CCACACCCAATGGCGTCATCACAGGCTACGTTGTCAGCTACATCCCCGTA
GATCGACACTTCCCAACAACACAGGAGCCGACAACGGTCCAAACGACGGA
AAGCTCCCAGAATGGAACTGAAGAAGAGGAGCCAACTGACACCTCTGCCT
CAAGAGTGACCCGAGACACAGGTCCCACCTTTGACCTTGACCTGGAGAAC
GCGACCTTAATCACCATGGAGACGAGTGAGCAGAGTGCGCTGCTGGAGGG
CCTGTACCCCAGCACTGTGTACCATGTACAGGTGGTGGCCAGGACTGGGG
CTGGGGCCGGGGTTACACCTGTCAACATCACAGCTACTACATTGCCCTGG
TACCCCATCATCCATCCACCCACCACTCCTGAACCTCCCACAACAAGAAC
CATCTCAACCCCCGACAAGGCTGTCACAGAAACCGCCTCCCCTCCCCCTG
GAGGTAGCAATGCAGCTCTTCTCCAGCCTCACGACGTCCCCATAGTGGTG
GGGGTGTGTTTAACAGGTGGAATTCTCCTCCTGGCGATTATCGGGTGGGC
CGGGTGGAAGTGTCGTCACAACCGCGCCAAGGCAAGACGTCGAGGATCCT
ACCGTAAGTTGAAGAAGTTGTACATCCACGATTCCTTCAGGAATTCTTTC
GTCAACGCCTTCAGGAATACTTACGTTACGGTATCCCTGACTATCGAAGT
GCTGAAAAATCTGTACTGTGAAACTGAAAATTCATTGCAGATTATAAAAG
ACTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:6741465..6744970 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96993_cuf7 |
| Biotype | protein_coding |
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