TCONS_00003583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003583
Unique NameTCONS_00003583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003583 ID=TCONS_00003583|Name=TCONS_00003583|organism=Clytia hemisphaerica|type=transcript|length=727bp
AAAAGGGTGTTTCTTCGGGAATCAAAATCATCATCAAACTCAAACAACAA
CACTAACAAGCAAACACTGAAGAACAACCAACcaatccaaaaatgaagac
catCATTGCTCTTGCTCTTATCGCTGctgTTTCAGCCATCACCAACCCAC
CCATCACTGGAACAACGCCACCAGCTATTCCATGCCCTAATTCATTATGT
AACGGAAAATATGATGGCAATTTTGCTCTTGATTACTACACAAACTACTT
CGTCCAATGTGTCGGTGGATTGGCTTACTGCCAAGCTTGCTTCCCTCTCT
CTTTAGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAACACGAC
GACTGTGTCACCACACAAAAATGGCACCCAGCCACCACCTTCGAATGTCC
AGACAAATGCCCCCACTATGGACCAGACTTCAGCGGAAACATTGAAGACC
CAGCTCAACCAAGACAATATGTTGCTTGCTGGAAGGGAGTCACTGTCGGA
TGTGTTGCTTGCCCAGGAAACTTGAAATTCAACCAACAAGAAAACGCTTG
CTTGTACGAAGGCAAATACCTCACTGAACCATCCCACTAATAATTTTATT
TCAACCTTTATAAATTGTTAAACAAATTTTCTACTTAAAATGACAGAAAT
TAAGTTATTTACAGTactaaattttcgaaaaacattttagtCAACACCCT
TTCTATATTACTGTTTGCAAAAGCTTG
Run BLAST on NCBI

protein sequence of TCONS_00003583-protein

>TCONS_00003583-protein ID=TCONS_00003583-protein|Name=TCONS_00003583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MKTIIALALIAAVSAITNPPITGTTPPAIPCPNSLCNGKYDGNFALDYYT
NYFVQCVGGLAYCQACFPLSLEFSQTCNQCLYSKHDDCVTTQKWHPATTF
ECPDKCPHYGPDFSGNIEDPAQPRQYVACWKGVTVGCVACPGNLKFNQQE
NACLYEGKYLTEPSH
Run BLAST on NCBI

transcript from alignment at sc0000030:884609..886765+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003583 ID=TCONS_00003583|Name=TCONS_00003583|organism=Clytia hemisphaerica|type=transcript|length=2157bp|location=Sequence derived from alignment at sc0000030:884609..886765+ (Clytia hemisphaerica)
AAAAGGGTGTTTCTTCGGGAATCAAAATCATCATCAAACTCAAACAACAA
CACTAACAAGCAAACACTGAAGAACAACCAACcaatccaaaaatgaagac
catCATTGCTCTTGCTCTTATCGCTGGTAAGTTTATTTCACATTGATTTT
ACTGgatatttcttttaaaatgtgtttattttttattaatttcgcttagc
gaaagtattacgatagcctttctgcggcggcggcgggGGAGAATTTTTTT
GGGGCGAAGATTATGGCGTTGGCGCTTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNgctcgatgtaaagtagatttcagattagc
tttaatctctacttcttctttttcccatgcggttcaaattctaggcgaaa
ttttcgacttcatgTCGTCTTGTTTTATGTTCTTTtagattataattttt
tctcgAAATAGGTATTTGATGTCCATTAGGTATTGACGCAAGCTAGTAAA
GTTCAGTGGCATTGACTTTCTTATAttcagttgacgctctctaattcgat
attttcaatagaaattaCCTTggttcatcgaataagggagagtatcgaat
tcatgatatgcagtttcttgttgacggtggctttcaatattatcgaataa
cgGAGCGCTTACCAAGGCGCCTTATAAtaatcatcaattttattttattt
tttcagctgTTTCAGCCATCACCAACCCACCCATCACTGGAACAACGCCA
CCAGCTATTCCATGCCCTAATTCATTATGTAACGGAAAATATGATGGCAA
TTTTGCTCTTGATTACTACACAAACTACTTCGTCCAATGTGTCGGTGGAT
TGGCTTACTGCCAAGCTTGCTTCCCTCTCTCTTTAGAATTCAGTCAAACT
TGCAACCAATGTTTGTACAGCAAACACGACGACTGTGTCACCACACAAAA
ATGGCACCCAGCCACCACCTTCGAATGTCCAGACAAATGCCCCCACTATG
GACCAGACTTCAGCGGAAACATTGAAGACCCAGCTCAACCAAGACAATAT
GTTGCTTGCTGGAAGGGAGTCACTGTCGGATGTGTTGCTTGCCCAGGAAA
CTTGAAATTCAACCAACAAGAAAACGCTTGCTTGTACGAAGGCAAATACC
TCACTGAACCATCCCACTAATAATTTTATTTCAACCTTTATAAATTGTTA
AACAAATTTTCTACTTAAAATGACAGAAATTAAGTTATTTACAGTactaa
attttcgaaaaacattttagtCAACACCCTTTCTATATTACTGTTTGCAA
AAGCTTG

Coding sequence (CDS) from alignment at sc0000030:884609..886765+

>TCONS_00003583 ID=TCONS_00003583|Name=TCONS_00003583|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000030:884609..886765+ (Clytia hemisphaerica)
atgaagaccatCATTGCTCTTGCTCTTATCGCTGctgTTTCAGCCATCAC
CAACCCACCCATCACTGGAACAACGCCACCAGCTATTCCATGCCCTAATT
CATTATGTAACGGAAAATATGATGGCAATTTTGCTCTTGATTACTACACA
AACTACTTCGTCCAATGTGTCGGTGGATTGGCTTACTGCCAAGCTTGCTT
CCCTCTCTCTTTAGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCA
AACACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCACCTTC
GAATGTCCAGACAAATGCCCCCACTATGGACCAGACTTCAGCGGAAACAT
TGAAGACCCAGCTCAACCAAGACAATATGTTGCTTGCTGGAAGGGAGTCA
CTGTCGGATGTGTTGCTTGCCCAGGAAACTTGAAATTCAACCAACAAGAA
AACGCTTGCTTGTACGAAGGCAAATACCTCACTGAACCATCCCACTAAat
gaagaccatCATTGCTCTTGCTCTTATCGCTGctgTTTCAGCCATCACCA
ACCCACCCATCACTGGAACAACGCCACCAGCTATTCCATGCCCTAATTCA
TTATGTAACGGAAAATATGATGGCAATTTTGCTCTTGATTACTACACAAA
CTACTTCGTCCAATGTGTCGGTGGATTGGCTTACTGCCAAGCTTGCTTCC
CTCTCTCTTTAGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGCAAA
CACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCACCTTCGA
ATGTCCAGACAAATGCCCCCACTATGGACCAGACTTCAGCGGAAACATTG
AAGACCCAGCTCAACCAAGACAATATGTTGCTTGCTGGAAGGGAGTCACT
GTCGGATGTGTTGCTTGCCCAGGAAACTTGAAATTCAACCAACAAGAAAA
CGCTTGCTTGTACGAAGGCAAATACCTCACTGAACCATCCCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002000XLOC_002000Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003583-proteinTCONS_00003583-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003583-exon-sc0000030-1491911889:884609..884734TCONS_00003583-exon-sc0000030-1491911889:884609..884734Clytia hemisphaericaexon
TCONS_00003583-exon-sc0000030-1510915933:884609..884734TCONS_00003583-exon-sc0000030-1510915933:884609..884734Clytia hemisphaericaexon
TCONS_00003583-exon-sc0000030-1575043694:884609..884734TCONS_00003583-exon-sc0000030-1575043694:884609..884734Clytia hemisphaericaexon
TCONS_00003583-exon-sc0000030-1491911889:886165..886765TCONS_00003583-exon-sc0000030-1491911889:886165..886765Clytia hemisphaericaexon
TCONS_00003583-exon-sc0000030-1510915933:886165..886765TCONS_00003583-exon-sc0000030-1510915933:886165..886765Clytia hemisphaericaexon
TCONS_00003583-exon-sc0000030-1575043694:886165..886765TCONS_00003583-exon-sc0000030-1575043694:886165..886765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:884609..886765 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.184725	0.145972	0.088627	0.329742	4.10183	2.03893	2.60413	6.92977	6.33238	14.5112	42.1147	20.8331	0.206548	0	0	0.0761865	0	0	0	0	0	0	0.28174	0.200453	0.152037	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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