TCONS_00000265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000265
Unique NameTCONS_00000265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000265 ID=TCONS_00000265|Name=TCONS_00000265|organism=Clytia hemisphaerica|type=transcript|length=281bp
CGACTATCCCTTACGTGTGGCGCGTTAGACTTTCATAAGGAGAAGGAAGA
TACATGAACAAAAATTTAGAGAGGGGATATGAGTTATGGAAATTatgcaa
aatcaaaacagatGCAGGTGATAACCTCTCAACTTTTGCATTGAGTGGGG
TAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTTCAGATTTCGATAT
GACAATACAGAACTTGAGGAGGGCTATAAACTTTGGGCTGTTCTGAGAGA
GAAAATGCATGAATGAACTAAGATATCCTGT
Run BLAST on NCBI

transcript from alignment at sc0000001:2528828..2532888-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000265 ID=TCONS_00000265|Name=TCONS_00000265|organism=Clytia hemisphaerica|type=transcript|length=4061bp|location=Sequence derived from alignment at sc0000001:2528828..2532888- (Clytia hemisphaerica)
CGACTATCCCTTACGTGTGGCGCGTTAGACTTTCATAAGGAGAAGGAAGG
TATTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGATATTCAGAGAA
AGCTTGTTATTGATCAGCCACCTACTGACATTTTCCATCTCCCTATTCAC
CAAGATTTCTAGTTCCTTGAGATCACTGTGACGAGCCACCAGGCAAGTAT
CATCTGCAAATAAGGTATAGAGAAATGATTCTGTCGACTTGGGGATATCG
TTAATATAGAGTAGAAACAAAAGGGGACCCAGGACCGAGCCTTGAGGAAC
ACCATATTTCATTTTGAGTGGAGTGGAAAGGTTATTTCCAACACTGACAC
ACTGGTACCTTGAATCTAGGTAACTCTCAAACCATTTCAACATTGGGCCT
CTGATACCTGACCTCATTAACTTACCAAGGAGGATTTTGTGGTCCACTGT
ATCGAATGCTTTTGCTAGGTCTAGGAAAATAGCACAGCAGTGGTCTTTAT
TTTTCATGGCTGTCGATATTTTATTTGTAAGGTCTAGAATGGCATGACTT
GTTGACTTTTTGGGTTGAAAACCAAATTGATTTGAAGAAAGTATTTCAAA
GTCAGTAAAAAAATTGATAAGACGCTGGTGTATGACTTTCTCAAATATTT
TATCGAATATTGGGAGTACAGAAATGGGTCGATAGTTCTTGAAGTCGTTC
TTTGCCCCATTATTTTTAAAGAGAGGCACTACCTTTGAGAATTTGAGTTT
TTCTGGAAAAATTGATTGTGTGACAGAAGCATTGATTAAGAATGATAGAA
TAGGAGATATGGCCTCATCAATTTGTTTAATCACAGCTACTGGAAAATTG
TAAATGTCACTTGCTTTCTTCTCATCAAGTTGTTTTACAAAAGCAGAAAT
TTCAGCTTTGTCAGTTGGTTTGAAAAAAAAACTTTTATTACTAGGGATAA
TAGAATTTAGTGGATCTGTGCCTTTTTTTTGCTTGGAAAGTAAATTTTCA
GCAACATTTGAAAAGTGTTCGTTAAATTTTTGAGCGATTTTCGAATTGCC
TGTAATTTTCTTGTCATTGTATAACATTGTTGGTGGAATATAATTGTTTT
TGGTTCTATGTTGTTTGTATTTGACTTGTTTTATCATTTTGAATTTTTTT
TTGTATCCTACCCACAAGTGAACCACAAAACCAGCATTGCAACATTTAAA
ACGAAACTTCCTTTATGGGAGAATCAGGAGAATGGGACCTTCCTGCCCTT
CCTGCCTCCTCTCCCGCCCAGACTATCATATCTGTTATATACGTCACAAG
GCGTCTTTTTGTCTGAACAAAAGGCAGCAAAACTCCGAGCAGAACATCAT
ATTTTCCAACATGGCGGACGACGAAGTTGCATCAAACAGCGAAGTGTTCG
ACGATGTCGATTCAGATCCTGGATCAATCATAAACAATGTAGTTGAATCA
TGCAGTAAAATTTTAATCCCTTCCATGGCTCAACCTTCCATGAACAGGCC
ACACAATGAAGAAGAAGTAAATACGACTGACGCCATTTTTCATACGGATC
ACGATGATGAAGGGATCAACACTAAAAGTGACGAAGAATCGTCGCTGGAA
GATCAAAACACCGACGATGTGGTAAACAACATTAAGCGTGGAAGTCCTCT
TCTCGAAGATAAACAAAGGATCAGTGGTCACAGTCCAAGAGTTGTAAGAT
GGACACTAGATACTATGGCAGCTGCAATGGATGCAGTTTTTGCAGGGGAG
ATGACCACAACAAATGCATCAAGAAAATTTGGAATCCCCAGAACCACCCT
CCTTGATAGGCTTTCAATGAAAGTTAAGAGGCAACATTTAGACTGTCCAG
GTTCTTTCCCTCTTAATGCTGATAATGATGCAAAAGTTGTTGATTTTATT
CTTGCTAATCAAAATCTTGATAAACAAACTTTAATCAAGGGGCTTTTAAG
CCTTGGAGAGGAATTAGCTAGTATGCAGGGAAGACCTTTCAATGGGCCAT
TAAACTCCAGGAAATGGTTGAAATTGTTTGTTCAAAAGCATCCAAATTTG
AATGTTTTTTCTTACAGCCGATCTAGAGCACCAAGCTCACGCTCAGTTTC
TTTTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTA
ATGATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGAT
CCTTTAGCACAATTGCAATCTGAACATGGCACAGAACAAGATTCTCCAAC
TCTTCCAGATNTTTGAATGTTTTTTCTTACAGCCGATCTAGAGCACCAAG
CTCACGCTCAGTTTCTTTTTCTGGCACTAGCTCCCATGCTCGACTTCAAT
CGTCATCTATTTCTAATGATAATACAGTGCTTATTCCTCAGCAAATATTA
CACATCCAGCATGATCCTTTAGCACAATTGCAAACTGAACATGGCACAGA
ACAAGATTCCCCAACTCTTCCAGAAAACGATAATGTGTTTGATTCTTTGG
AGTCATCCTTAGCAAAGCAAGGCGTTCGAGCTATAGAACAAAAACTGGGA
GCTGAACAATTGTCATATTTCAATTATAGATACATGAACAAAAATTTAGA
GAGGGGATATGAGTTATGGAAATTATGCAAAATCAAAACAGATGCAGGTG
ATAACCTCTCAACTTTTGCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAA
GAGCATTTGAAGTATTTCAGATTTCGATATGACAATACAGAACTTGAGGA
GGGCTATAAACTTTGGGCTGTTCTGAGAGAGAAAATGCATGAATGAACTA
AGATATCCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000142XLOC_000142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000265-exon-sc0000001-1575043694:2532840..2532888TCONS_00000265-exon-sc0000001-1575043694:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1575043694:2528828..2529059TCONS_00000265-exon-sc0000001-1575043694:2528828..2529059Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1510915933:2532840..2532888TCONS_00000265-exon-sc0000001-1510915933:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1510915933:2528828..2529059TCONS_00000265-exon-sc0000001-1510915933:2528828..2529059Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1491911889:2532840..2532888TCONS_00000265-exon-sc0000001-1491911889:2532840..2532888Clytia hemisphaericaexon
TCONS_00000265-exon-sc0000001-1491911889:2528828..2529059TCONS_00000265-exon-sc0000001-1491911889:2528828..2529059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2528828..2532888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.41506	7.92668	0	1.34567	29.4334	18.8452	28.1406	29.0487	6.50758	4.61282	3.50769	12.0368	3.95129	8.32615	3.20516	2.43307	3.79742	8.07382	4.5673	0	6.58108	3.65775	10.4175	9.36284	11.0377	14.9526	1.26465	3.25979	2.37405	4.2749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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