TCONS_00000264 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000264
Unique Name	TCONS_00000264
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2370

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000001:2528102..2530471-

transcript sequence

>TCONS_00000264 ID=TCONS_00000264|Name=TCONS_00000264|organism=Clytia hemisphaerica|type=transcript|length=2370bp
GTGAACCACAAAACCAGCATTGCaacatttaaaacgaaacttcCTTTATG
GGAGAATCAGGAGAATGGGACCTTCCTGCCCTTCCTGCCTCCTCTCCCGC
CCAGACTATCATATCTGTTATATACGTCACAAGGCGTCTTTTTGTCTGAA
CAAAAGGCAGCAAAACTCCGAGCAGAACATCATATTTTCCAACATGGCGG
ACGACGAAGTTGCATCAAACAGCGAAGTGTTCGACGATGTCGATTCAGAT
CCTGGATCAATCATAAACAATGTAGTTGAATCATGCAGTAAAATTTTAAT
CCCTTCCATGGCTCAACCTTCCATGAACAGGCCACACAATGAAGAAGAAG
TAAATACGACTGACGCCATTTTTCATACGGATCACGATGATGAAGGGATC
AACACTAAAAGTGACGAAGAATCGTCGCTGGAAGATCAAAACACCGACGA
TGTGGTAAACAACATTAAGCGTGGAAGTCCTCTTCTCGAAGATAAACAAA
GGATCAGTGGTCACAGTCCAAGAGTTGTAAGATGGACACTAGATACTATG
GCAGCTGCAATGGATGCAGTTTTTGCAGGGGAGATGACCACAACAAATGC
ATCAAGAAAATTTGGAATCCCCAGAACCACCCTCCTTGATAGGCTTTCAA
TGAAAGTTAAGAGGCAACATTTAGACTGTCCAGGTTCTTTCCCTCTTAAT
GCTGATAATGATGCAAAAGTTGTTGATTTTATTCTTGCTAATCAAAATCT
TGATAAACAAACTTTAATCAAGGGGCTTTTAAGCCTTGGAGAGGAATTAG
CTAGTATGCAGGGAAgacctttcaatgggccattAAACTCCAGGAAATGG
TTGAAATTGTTTGTTCAAAAGCATCcaaatttgaatgttttttcttacag
cCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTTTTTCTGGCACTAGCT
CCCATGCTCGACTTCAATCGTCATCTATTTCTAATGATAATACAGTGCTT
ATTCCTCAGCAAATATTACACATCCAGCATGATCCTTTAGCACAATTGCA
ATCTGAACATGGCACAGAACAAGATTCTCCAACTCTTCCAGATNtttgaa
tgttttttcttacagcCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTT
TTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTAAT
GATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGATCC
TTTAGCACAATTGCAAACTGAACATGGCACAGAACAAGATTCCCCAACTC
TTCCAGAAAACGATAATGTGTTTGATTCTTTGGAGTCATCCTTAGCAAAG
CAAGGCGTTCGAGCTATAGAACAAAAACTGGGAGCTGAACAATTGTCATA
TTTCAATTATAGATACATGAACAAAAATTTAGAGAGGGGATATGAGTTAT
GGAAATTatgcaaaatcaaaacagatGCAGGTGATAACCTCTCAACTTTT
GCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTT
CAGATTTCGATATGACAATACAGAACTTGAGGAGGGCTATAAACTTTGGG
CTGTTCTGAGAGAGAAAATGCATGAATGAACTAAGATATCCTGTGTTCGT
TTTAATATTGAATTAACTAATTACTTTATATACTTCAGTATAATTTTTTT
GCATGTTGGTTGTAAAATACGCATTATCAGTGCCTCTTAGATGGCGTTAA
ACATCTTGAAAGTGttcttttcatcttttcaaATTTCCCTTGGGGATTTT
CAGGGATGACAACCAAATCCactaaatccgcgaaatttgaTTCCTTTGTC
TTTTGCAACACAAATGTTACCTACTGTAGGGACAATATAATTTATCCTGT
TTTTATTGACTGAGTAGTAATGTTTGATTAATCTGTTATTCAATAGATCA
TTGCGTTCTCCCAAACAAATACTGGCTCATAACTTgtttttgtacatatt
tttaatcaaatttccCTTACTTTGTTAGATTTACAGATTTAGTTTGTTGT
ATATACTATCTATATACCTTGCATCATAAAAATTATACTGTTTTCtaatg
tcaacattagaccaagttatggTATACTATTTTTCGCTAATTATTGAAGT
AGTGGAATTGGATTAGGAACCATTCAAAACGTACATAAGTTCAAATATAA
GCAAAATTTGATACTCCCTCTGTGTATGTACGCTTTTCTGAAAACCCCCT
CCTCTAAGAAAATGTTTTATAATTATAGCTGGATAACAAATATGGGTAAC
ACAAGTAAGCTGGGTTACGAATATCAAATAGAAGGTTACAAAAAAACTAG
AAATcaaaacagtttgaaaa

Run BLAST on NCBI

transcript from alignment at sc0000001:2528102..2530471-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000264 ID=TCONS_00000264|Name=TCONS_00000264|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at sc0000001:2528102..2530471- (Clytia hemisphaerica)
GTGAACCACAAAACCAGCATTGCAACATTTAAAACGAAACTTCCTTTATG
GGAGAATCAGGAGAATGGGACCTTCCTGCCCTTCCTGCCTCCTCTCCCGC
CCAGACTATCATATCTGTTATATACGTCACAAGGCGTCTTTTTGTCTGAA
CAAAAGGCAGCAAAACTCCGAGCAGAACATCATATTTTCCAACATGGCGG
ACGACGAAGTTGCATCAAACAGCGAAGTGTTCGACGATGTCGATTCAGAT
CCTGGATCAATCATAAACAATGTAGTTGAATCATGCAGTAAAATTTTAAT
CCCTTCCATGGCTCAACCTTCCATGAACAGGCCACACAATGAAGAAGAAG
TAAATACGACTGACGCCATTTTTCATACGGATCACGATGATGAAGGGATC
AACACTAAAAGTGACGAAGAATCGTCGCTGGAAGATCAAAACACCGACGA
TGTGGTAAACAACATTAAGCGTGGAAGTCCTCTTCTCGAAGATAAACAAA
GGATCAGTGGTCACAGTCCAAGAGTTGTAAGATGGACACTAGATACTATG
GCAGCTGCAATGGATGCAGTTTTTGCAGGGGAGATGACCACAACAAATGC
ATCAAGAAAATTTGGAATCCCCAGAACCACCCTCCTTGATAGGCTTTCAA
TGAAAGTTAAGAGGCAACATTTAGACTGTCCAGGTTCTTTCCCTCTTAAT
GCTGATAATGATGCAAAAGTTGTTGATTTTATTCTTGCTAATCAAAATCT
TGATAAACAAACTTTAATCAAGGGGCTTTTAAGCCTTGGAGAGGAATTAG
CTAGTATGCAGGGAAGACCTTTCAATGGGCCATTAAACTCCAGGAAATGG
TTGAAATTGTTTGTTCAAAAGCATCCAAATTTGAATGTTTTTTCTTACAG
CCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTTTTTCTGGCACTAGCT
CCCATGCTCGACTTCAATCGTCATCTATTTCTAATGATAATACAGTGCTT
ATTCCTCAGCAAATATTACACATCCAGCATGATCCTTTAGCACAATTGCA
ATCTGAACATGGCACAGAACAAGATTCTCCAACTCTTCCAGATNTTTGAA
TGTTTTTTCTTACAGCCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTT
TTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTAAT
GATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGATCC
TTTAGCACAATTGCAAACTGAACATGGCACAGAACAAGATTCCCCAACTC
TTCCAGAAAACGATAATGTGTTTGATTCTTTGGAGTCATCCTTAGCAAAG
CAAGGCGTTCGAGCTATAGAACAAAAACTGGGAGCTGAACAATTGTCATA
TTTCAATTATAGATACATGAACAAAAATTTAGAGAGGGGATATGAGTTAT
GGAAATTATGCAAAATCAAAACAGATGCAGGTGATAACCTCTCAACTTTT
GCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTT
CAGATTTCGATATGACAATACAGAACTTGAGGAGGGCTATAAACTTTGGG
CTGTTCTGAGAGAGAAAATGCATGAATGAACTAAGATATCCTGTGTTCGT
TTTAATATTGAATTAACTAATTACTTTATATACTTCAGTATAATTTTTTT
GCATGTTGGTTGTAAAATACGCATTATCAGTGCCTCTTAGATGGCGTTAA
ACATCTTGAAAGTGTTCTTTTCATCTTTTCAAATTTCCCTTGGGGATTTT
CAGGGATGACAACCAAATCCACTAAATCCGCGAAATTTGATTCCTTTGTC
TTTTGCAACACAAATGTTACCTACTGTAGGGACAATATAATTTATCCTGT
TTTTATTGACTGAGTAGTAATGTTTGATTAATCTGTTATTCAATAGATCA
TTGCGTTCTCCCAAACAAATACTGGCTCATAACTTGTTTTTGTACATATT
TTTAATCAAATTTCCCTTACTTTGTTAGATTTACAGATTTAGTTTGTTGT
ATATACTATCTATATACCTTGCATCATAAAAATTATACTGTTTTCTAATG
TCAACATTAGACCAAGTTATGGTATACTATTTTTCGCTAATTATTGAAGT
AGTGGAATTGGATTAGGAACCATTCAAAACGTACATAAGTTCAAATATAA
GCAAAATTTGATACTCCCTCTGTGTATGTACGCTTTTCTGAAAACCCCCT
CCTCTAAGAAAATGTTTTATAATTATAGCTGGATAACAAATATGGGTAAC
ACAAGTAAGCTGGGTTACGAATATCAAATAGAAGGTTACAAAAAAACTAG
AAATCAAAACAGTTTGAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000142	XLOC_000142	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000264-exon-sc0000001-1575043694:2528102..2530471	TCONS_00000264-exon-sc0000001-1575043694:2528102..2530471	Clytia hemisphaerica	exon
TCONS_00000264-exon-sc0000001-1510915933:2528102..2530471	TCONS_00000264-exon-sc0000001-1510915933:2528102..2530471	Clytia hemisphaerica	exon
TCONS_00000264-exon-sc0000001-1491911889:2528102..2530471	TCONS_00000264-exon-sc0000001-1491911889:2528102..2530471	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:2528102..2530471 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.61569	10.1555	4.87018	3.51917	25.843	20.6749	20.7934	22.636	11.9278	10.8463	9.34611	9.94936	5.94873	6.25119	9.54072	8.27167	16.3499	14.0784	6.84456	7.81622	11.7152	10.8401	14.2003	15.0529	5.72742	6.08832	10.1101	6.73737	9.54129	10.624

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000264 vs. Swiss-Prot (Human)

BLAST of TCONS_00000264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000264 (transcript) - C. hemisphaerica