TCONS_00003463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003463
Unique NameTCONS_00003463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1823

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003463 ID=TCONS_00003463|Name=TCONS_00003463|organism=Clytia hemisphaerica|type=transcript|length=1823bp
CGGAGATATTGCACCAATAAGTGTCCCTGGTCGCTCCTTTGCATTGGTTT
GGATTCTGATCGGCCTGGTCATCACTGCAATCTTAACTGGTGTAATTACA
ACCGGTTTAACATCAAGcgttatgacgtcatcagccaAAATTTACGGGAC
TAAAcTTGGTGCCATCTCCAACTCTAATGAATATTTCTTCGGTGCACGAA
GAAATGGAGATATGCAAGAAATGGGTAGTTTCGCCAGAATCTCCAAAGAC
ATGAAGAGTGGTATGATCAAGGGTGCATTGATCGATGCTTATGAGGCGTC
CTACCGAACCACAGACTTTGAAGATTTCAACGTTGGTAAAATCATTGACG
ATAATAAAGTGTATGGTATTGCTTTTGGTCGATCTATGTCTGACTCCATT
CTTTATGACAAGTTTGAGAATTGGATGGAAGCCAACAAAGGACGAGTGTT
GAGAGCCGTTGAACAAAATGTCAAAAGTTTCAAAAAAGGTGATGCAGAAG
CTTTGGCAAAGTCAGCAGACATTTTCGATCCAGCATCAACATACTTCAAG
AAGTCGGTCAACACATCCATCTATTTGCTCATTGTTTTCATCATTGGTGG
TTTGATGTGGGAATACATCTATTTGAGACCACGAGACCGAATGTTAGCCT
CTGCTAACAAACTTGAGTTGCTTGTGTCAGAGGATGGTGTGAAGCAAGCC
AAGTTTTGTAAAGTGTTGAAAGGGAATGTTTTGAAGGATGTGGATGAGCT
GAAGGAACGAATGGCGAACATCGTCACCACAAAAGCTTATGTacacaaac
aacaaatcaaGCAATTTCATAAGCAATAATGgaaaatatggaaataatgG
AATTTTTTCGAGAAAGTTAAGCGAAAGTTAAGAGTTAAGCAAATGGACAG
TGACATGATTGTCAGATAAACCTTTAAACTCCAACTGTCGGAGAAGTATG
ATTTGCTGCATACGGCAGATTGTGATttgaaaatgtatttttaattttta
aagtttgaattttGTATATAGTATTATGCCAAGGTATTCTACGAGCTGAC
GAACTTGTACTGAACATTCGTTCATGTCAAGTctgtagcgagtttatgta
tctgtgTTTTTTGCGACGGAGATGGTTAGCTTCTAAGttgactagatcct
gattgactgaGAACGGAGGTAAGTcaacacttttaccgtcctcaattttg
cgggtcagaaatgtgggctattccaaatcgcttcagccaCTCTGCCGTCC
TCAAGAGtgaaaatacataaactcgcttgtGGTGGGGAGAATAtcgtttt
tctaatttttttattagggTAATCTCACTGCACATTTATATTacgttttg
agaaaattgattgactcgccgatttttttttaatgagaagTTTTGGTTAT
TCTAAAGTTCTTTTGACGATTTGTGAATTTAAAGATTGAGGGAAATTAAG
ACGAAATTTAGCTCCATCGGGACTACATACAAACCACTTTAAATCAGCTG
GAACACAATTCAATGTTCATCCaacattatatggacgttatgaacattat
ccaaaacgttgaaacaacataaGGATTACATCAGTTGAGTAAACAGTTGA
GTAAACAGATAGCAGGGAAAGCCATCTTCCAATAAACGAAAATATCGAAT
TATGTAGGCTCGAATAAAATGAGTGTCTTCTCACTCgcgtttttattcta
tttttattgaaaataatacGAGCTTCCATTGTAAAGTTGTAAATACGCAC
ACAATATTGATGATTTATGGGTAATTTATAAGACTTTTTAAGaactaaaa
tttcaatttcctttacttttcac
Run BLAST on NCBI

transcript from alignment at sc0000028:839054..843633+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003463 ID=TCONS_00003463|Name=TCONS_00003463|organism=Clytia hemisphaerica|type=transcript|length=4580bp|location=Sequence derived from alignment at sc0000028:839054..843633+ (Clytia hemisphaerica)
CGGAGATATTGCACCAATAAGTGTCCCTGGTCGCTCCTTTGCATTGGTTT
GGATTCTGATCGGCCTGGTCATCACTGCAATCTTAACTGGTGTAATTACA
ACCGGTTTAACATCAAGcgttatgacgtcatcagccaAAATTTACGGGAC
TAAAGTAAGTTGGTAAAATAATGNCCTTGTGTGGTTTTTATACAAACGCT
GAATTGGAAGTAACATTTACTGccagaaaaatggaaaatttttaaacacg
AAATAAAGTGCTAGATTCAATACGTCATCCAAAATACGACGCAAATttta
atgtttcatttttctggcTTGGCAAAGTTTGAAGATTAATTTCTCTAGCC
TGTGAATTGAAACTCAATCTCTAGCCTGTGAGTTGAAACTCAATCCCTAG
CCTGTGAATTGAAACTCAATCTCTAGCCTGTGAATTGAAACTCAATCTCT
AGCCTGTGAATTGAAACTCGATCTTTAGCCTGTgaattgaaactcaatgg
tccaAACGGTGAATAACAATTCCAGCAAATCTGGTCATTCAGACCACGAA
AATAAGCTCTGTTTCCGTTTATTTATTCTTCTTTATGGTAACTTGGGGAT
TCACACCTTGTAAGGAAATTACACTTGATAATTATGTGTACTCAGAAGGG
CTATTAGTACAAATAGTGGGGAAAACATCCTCCACAGTGCCGTaaccaaa
cgtaaatctcgtgatccaagccacgataaacttccaatatgaatatcact
gtGACGATAAACTCAAACTTATTTCGATGATTTTTCTTTATGTTCTAGTT
ATGGAGATATTGCACCAATAAGTGTCCCTGGTCGCTCCTTTGCATTGGTT
TGGATTCTGATCGGCCTGGTCATCACCGCAATCTTAACTGGTGTAATTAC
AACCGGTTTAACATCAAGcgttatgacgtcatcagccaAAATTTACGGGA
CTAAAGTAAGTtggtaaaataatgaaaaaacagTTAAcactcgctaattc
gaactcgaaaggGAAATTCTAATTtgctcgaattagagaaagattcgaaa
taaTAAAAAGTAATATAGGTGGGTTTCCCCTTGACGGGAACTGAGAATGA
GTTCGAATCATAGgaagattcaaataatagaagttcgaattagcgtgAGT
ACTGTAATGAGagtaaattcaatattttaccaATTTACCTGCGTTCAGAT
AAATATATTCTGCTTTGGAGcagaatcaaaatcaaaatatgatagccgca
tttttttttcaccgttcaacatattTTGCTTTGGAGTTATCTTCTGAAAC
TTTTTATGCAAAGTGAAAAGTCTTTTCTCTAGTGTTAAAATGACCCAAtc
ttactttatttttttagcTTGGTGCCATCTCCAACTCTAATGAATATTTC
TTCGGTGCACGAAGAAATGGAGATATGCAAGGTCTCATCATTCTTTTATC
TTAAGAACTTCATTACAGGGGCATGTAGACACTGTAGCGCCATAAAGTCT
GATATTAAAACCtctttaattaaaaccagccgtggtgtccttgaaaaagc
aaataaaattcgtgttaaatttttgcgtgttcatttcaaggccgttaatt
ATGTGTCTATTTAATTTCGTGTAATAAGGCAGTAGCTGaaaagataatta
cagtgtaataaaaatctgctctcctacacaaatttttcacccctcttgtc
tacgctactgtaagATATTCACCGTAATGACATTATAATCATTTTCAATA
ATAGAAATGGGTAGTTTCGCCAGAATCTCCAAAGACATGAAGAGTGGTAT
GATCAAGGGTGCATTGATCGATGCTTATGAGGCGTCCTACCGAACCACAG
ACTTTGAAGATTTCAACGTTGGTAAAATCATTGACGATAATAAAGTGTAT
GGTATTGCTTTTGGTCGATCTATGTCTGACTCCATTCTTTATGACAAGTT
TGAGAATTGGATGGAAGCCAACAAAGGACGAGTGTTGAGAGCCGTTGAAC
AAAATGTCAAAAGTTTCGTAAGTGTTTGattcatagtccgtataaaaaac
cttGGTTTGGAACCTCGCTGTTTTtgctttttgttagctttttttatttg
tcaatatcaaaagataaaaatcgatttgcctggtttttgatcacgttacc
aagtactcctcttgggattggttaaaaagattgaatcacatgatcaaata
gtgagcaaaacaaaccaatttttcaacgcaagttcaagaaagaaacaaag
gaaagaaacaaggcttccagaccgggttttttatacggactatagTTTGA
TCCTTCACTTTCAGAACAGTACGTTACAGACTTAAATTAAATCTCACTGC
ATATGGCTACGAATTTCCACTCCTCCGAAGTTGCCGAGTTTTTTGAGTGT
TTACTAGTATTCACTGAGCGTACGTTGTCCATAACACTGATCCCTgacta
cttgactggatcgggTTTCAAATATAAAAGGAAGTGTGTCCAGTTTAAGA
GAGACTAATCTGGCATCTTGTATTCTATTTTGATTGTCAACAGcagaatt
cgaatgttttgaaattcgaacgttcgaaaatctaacgtcaaacaaaaaac
aacatggCAGACTATAACCGACCATAAAACTGGACACACTTTCACGGGAA
ATTTGTTGAAACATGGTAAGTACTGGAAAGATTTTCATGGGCTGAAATCG
AGGAAATGTATTCATTCATTACATTTTCATTGCAGAAAAAAGGTGATGCA
GAAGCTTTGGCAAAGTCAGCAGACATTTTCGATCCAGCATCAACATACTT
CAAGAAGTCGGTCAACACATCCATCTATTTGCTCATTGTTTTCATCATTG
GTGGTTTGATGTGGGAATACATCTATTTGAGACCACGAGACCGAATGTTA
GCCTCTGCTAACAGTAAGTTTTTCTTTCATCCACGTAACATGCAGTTGTc
tcactcttttttataagaaccaataaaTTTTTGTGGATAAGTTCAACTAT
TCTTGTTTTATTTTGGCACTTCGAGGTTCATATTGGTCTTATcctgtttt
tattttaaggaCAATATTGAGGCATTTCAGGCTTTGTACTACTTTGACTA
AATTTACCTAAACTTCAGTCTTTCAGACTTGGCATTGTTCTGAAATTTTT
CAGTTTCGTccttcttataaaattgtttttataaaaaaggagAGTATTCT
AGAAGAAAACATTTGGGGTATTTTACTCCGATTAAAGCAACTTTTGAGAT
CTTTGttggctttttttttttttttttttttttttttttttNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAGAATCTTTTTGCCAA
ATTATTCTTTAAACGTTGAGATTCTTACACGGTTTCACGAccaatttttt
catattttctttatAGAACTTGAGTTGCTTGTGTCAGAGGATGGTGTGAA
GCAAGCCAAGTTTTGTAAAGTGTTGAAAGGGAATGTTTTGAAGGATGTGG
ATGAGCTGAAGGAACGAATGGCGAACATCGTCACCACAAAAGCTTATGTa
cacaaacaacaaatcaaGCAATTTCATAAGCAATAATGgaaaatatggaa
ataatgGAATTTTTTCGAGAAAGTTAAGCGAAAGTTAAGAGTTAAGCAAA
TGGACAGTGACATGATTGTCAGATAAACCTTTAAACTCCAACTGTCGGAG
AAGTATGATTTGCTGCATACGGCAGATTGTGATttgaaaatgtattttta
atttttaaagtttgaattttGTATATAGTATTATGCCAAGGTATTCTACG
AGCTGACGAACTTGTACTGAACATTCGTTCATGTCAAGTctgtagcgagt
ttatgtatctgtgTTTTTTGCGACGGAGATGGTTAGCTTCTAAGttgact
agatcctgattgactgaGAACGGAGGTAAGTcaacacttttaccgtcctc
aattttgcgggtcagaaatgtgggctattccaaatcgcttcagccaCTCT
GCCGTCCTCAAGAGtgaaaatacataaactcgcttgtGGTGGGGAGAATA
tcgtttttctaatttttttattagggTAATCTCACTGCACATTTATATTa
cgttttgagaaaattgattgactcgccgatttttttttaatgagaagTTT
TGGTTATTCTAAAGTTCTTTTGACGATTTGTGAATTTAAAGATTGAGGGA
AATTAAGACGAAATTTAGCTCCATCGGGACTACATACAAACCACTTTAAA
TCAGCTGGAACACAATTCAATGTTCATCCaacattatatggacgttatga
acattatccaaaacgttgaaacaacataaGGATTACATCAGTTGAGTAAA
CAGTTGAGTAAACAGATAGCAGGGAAAGCCATCTTCCAATAAACGAAAAT
ATCGAATTATGTAGGCTCGAATAAAATGAGTGTCTTCTCACTCgcgtttt
tattctatttttattgaaaataatacGAGCTTCCATTGTAAAGTTGTAAA
TACGCACACAATATTGATGATTTATGGGTAATTTATAAGACTTTTTAAGa
actaaaatttcaatttcctttacttttcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001925XLOC_001925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003463-exon-sc0000028-1491911889:839054..839164TCONS_00003463-exon-sc0000028-1491911889:839054..839164Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:839054..839164TCONS_00003463-exon-sc0000028-1510915933:839054..839164Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:839054..839164TCONS_00003463-exon-sc0000028-1575043694:839054..839164Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1491911889:839966..840008TCONS_00003463-exon-sc0000028-1491911889:839966..840008Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:839966..840008TCONS_00003463-exon-sc0000028-1510915933:839966..840008Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:839966..840008TCONS_00003463-exon-sc0000028-1575043694:839966..840008Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1491911889:840421..840484TCONS_00003463-exon-sc0000028-1491911889:840421..840484Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:840421..840484TCONS_00003463-exon-sc0000028-1510915933:840421..840484Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:840421..840484TCONS_00003463-exon-sc0000028-1575043694:840421..840484Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1491911889:840808..841070TCONS_00003463-exon-sc0000028-1491911889:840808..841070Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:840808..841070TCONS_00003463-exon-sc0000028-1510915933:840808..841070Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:840808..841070TCONS_00003463-exon-sc0000028-1575043694:840808..841070Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1491911889:841789..841966TCONS_00003463-exon-sc0000028-1491911889:841789..841966Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:841789..841966TCONS_00003463-exon-sc0000028-1510915933:841789..841966Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:841789..841966TCONS_00003463-exon-sc0000028-1575043694:841789..841966Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1491911889:842470..843633TCONS_00003463-exon-sc0000028-1491911889:842470..843633Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1510915933:842470..843633TCONS_00003463-exon-sc0000028-1510915933:842470..843633Clytia hemisphaericaexon
TCONS_00003463-exon-sc0000028-1575043694:842470..843633TCONS_00003463-exon-sc0000028-1575043694:842470..843633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:839054..843633 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0406514	0.103716	0.0111052	0.0473887	0.567512	0.518729	0.243701	0.187041	0.286039	0.182657	0.111191	0.314282	1.71533	1.3778	0.202152	0.0969891	0.172435	0.207227	4.46084	4.59237	1.37436	1.26583	0.509169	0.668245	0	0	0.280364	0.337044	0.1212	0.0481096
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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