TCONS_00003473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003473
Unique NameTCONS_00003473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2927

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003473 ID=TCONS_00003473|Name=TCONS_00003473|organism=Clytia hemisphaerica|type=transcript|length=2927bp
ttttatttcttttctttgtagAGAAGTGACACAGAGAAAAGttacaaaaa
ttaaagaatCTCTCATTCCGGCTTGAGTCGTGAGTGAGTGAATTTACATA
GCCGTTCAGTTTTGGTATATACCTACACAAAgatttgttttatgtttttg
ggCTTGTAAAGGACTTTGATGGTGTGAATATATAAAAGTAAAGGTCAAGC
AAACATTATCGTATAATTTAGAAATGGTTTTTATATGTTGATGTGGAgta
caatttgaaaaatatttcttcgtTGAAAAGTTGGATTAAACGAGAAGAAT
TTGTTGTGAATAAAATACAGACTTACCGAACTTACAGAAATAAAATGGCT
CGACATTGGTGTGTTTTGGTCTGCTTTTTATTACTGATGAAAAATGTCAA
CCCAATGATTTGGATGCATTTGGGAACACAAACAAGCACAATATCTTCAA
AAAGTATCGCAAAGAACTTTTGTAACACATTGAACCTACACCCTTTCCAA
CGGACAGTATGCAATAATTTTACAGACCTGATCCCAAGTGTAGCAGAAGG
TATTCGATTAAGTATAGAAGAATGTCAAGAACAATTTCAAACGAGAAAAT
GGAACTGCAGTATCATGGCAGGTGGAAACTCCATATTTGGTCCCATGTTA
CAAAAAGCAAGTCGAGAATCTGCCTTCATCAGTGGAATCACAGCAGCAGG
CGTTGCTTTCTCCGTCACAGAGGCGTGTGCAGAAGGGCGTTCATTACATT
GTCGTTGCGATAACAGTATAAGAGGTCAAACAGAAGAAGGTTGGAAATGG
GGTGGGTGTAACCGCCCGATCTCATACGGCATCTGGTTTTCACAATTATT
TATTGATATGGTGGAGATAAAAGTTAAGAAAAGAAGAGATCCAAGACGAG
CAATGAATCTACATAATAATAGAGCTGGACGTGAGattatcCGCCATAAC
TTATGGACAAAATGCAAATGTCATGGAATGTCAGGGAATTGTAATTTAAA
AACATGTTGGCTCGCTCAACCAGGATTTCAACAGCTTGGTAAAATGTTAA
AAGATCGTTATGATTCCGCACATGAGATGgatttcgaattcaaaatcaag
aaaaacggtAAAAAGAGATTCAAGAAATTAATACCACGATACAAAGAATA
TTTACCACCATCAACATTAGACTTTGTTTATTATGAAGAATCACCTAATT
ATTGTGAAAATAATAACAGTTTGGGTATTATCGGTACCCGCGGCCGCGAG
TGTAATATAACGTCCGCCGGAGTTGACGGTTGCGATCAGATGTGTTGCAG
GCGTGGattcaatgtaaaaattgtACAAGAAACTAAAGCATGTGACTGTA
AATTTATATGGTGTTGTCATGTCAAATGTAAGAAATGTACAGAAGCAGTA
CCTAGGTACACGTGTAAGTGAGCACGTTGGACCTACTGGTCACGTGACTG
TCGAAACCGataaaaaagagagagaaaaatgTTCTAGATGGTGGAATTTT
TATTGTATGTGTTTGTATGTGAAAACATTGGTATCTATGACAATGGCCTc
aacaatgaaaatatgcaaATAGAAGAACAAAAAAGAACGGGAAAAATTAG
CGTAAGAGAGAGAAATATCTACgcggataaaatgaaaaaatcgatGCAAC
TGCTGCTGAAGTTATGTGTGTACAAAGTTTCTTCTAACAAGAAGTAAGAT
TTTTCTTGGTATACTGAAATCTGTAAAAAACTGATGtagaagaaaagaaa
agttaaaaaagctTACAAGAGAACATCTTTGATAAAATAGACTTATGAAA
AATAATGCTGACATCAACTAAAATTGTCTAACCACTACGGTATGTTTGTT
TatgttcttttttaatgatcTTTAATCATAAATCCTTTGTAAGTCTTTAT
AGTACAACTTTTTAGTTTTATTACCCCCGTGACCCTAACTTTCAATTTTC
TATCCATCCACATCTTCCTAACCTGTTCGCGTTTAAGCCAtaaatgttaa
atttttttcagataaaaaaaactgCCATTTTTGAGTTCACCATCTTATAA
CAAAGCATATCCACCAACCTTTAACCTGACCCTACCTCCCTCCTCAGACC
TGGCTTTATCCTTTGACCCACACCCCTTATATCCCCCTCTGACCCTTTGA
TCTTTCTTTGTCCCCTATCCTCTCCCTTCTTTAACCCAGGAATTTTCTAT
AATTACAAAAAATGGAAGACTTAATCTTCTAGTGAAGCCACTACACAATA
CCTAGTCAAAACCTTTCCTGAAGCGTGAAACTTTCTCCATCTTCATTTGG
AAAGTTTCAAGTTTCCCAAGCTTCCAGGCTAGACAGAACTAGGCCAACTA
AGCTACCAGATTTTAGCCTAGTTGAGCTTTAGTTGAGCTTTTACTTTTGA
AGATGAGAATTTTATGATTCTTGCTTAAACGTGTGGATAAGTGTTTATAC
CCAATAAATTTTATGCAATATTTTTGTTTggacttaattttttttttcaa
catgtAGTTATAggttttattattttaacaaggagatgtagaaagtttta
ttatttataaATATTCATTTATTATCATCATTTTTTGTGACCATGTTATC
ACATGATTATGACCCCGCCCTGAAAAAaaccttttatttttttgaaaatt
tattatttagTATATACTGTAGAAAATTGAAGTTAACAATaattattatt
taaaaacagAAAGATTGGTCCAGTAATTTGGTACTTTGTGAACCCTGAAT
TCATGATTTGCACCATTGTAATGACTTCCACCGACCTAACAGACGATTGA
CTGAATGTGATCTAATGAATGATTTTACATCACTTACGCAACCAGCTGTT
GGATCCGTGATGTAACGTCAGAAGACATTGccatggtgcatatcatgaac
aGAGACTTTAAAGCTCTGATACCACTG
Run BLAST on NCBI

protein sequence of Wnt3

>TCONS_00003473-protein ID=TCONS_00003473-protein|Name=Wnt3|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MARHWCVLVCFLLLMKNVNPMIWMHLGTQTSTISSKSIAKNFCNTLNLHP
FQRTVCNNFTDLIPSVAEGIRLSIEECQEQFQTRKWNCSIMAGGNSIFGP
MLQKASRESAFISGITAAGVAFSVTEACAEGRSLHCRCDNSIRGQTEEGW
KWGGCNRPISYGIWFSQLFIDMVEIKVKKRRDPRRAMNLHNNRAGREIIR
HNLWTKCKCHGMSGNCNLKTCWLAQPGFQQLGKMLKDRYDSAHEMDFEFK
IKKNGKKRFKKLIPRYKEYLPPSTLDFVYYEESPNYCENNNSLGIIGTRG
RECNITSAGVDGCDQMCCRRGFNVKIVQETKACDCKFIWCCHVKCKKCTE
AVPRYTCK
Run BLAST on NCBI

transcript from alignment at sc0000028:166922..176298-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003473 ID=TCONS_00003473|Name=TCONS_00003473|organism=Clytia hemisphaerica|type=transcript|length=9377bp|location=Sequence derived from alignment at sc0000028:166922..176298- (Clytia hemisphaerica)
TTTTATTTCTTTTCTTTGTAGAGAAGTGACACAGAGAAAAGTTACAAAAA
TTAAAGAATCTCTCATTCCGGCTTGAGTCGTGAGTGAGTGAATTTACATA
GCCGTTCAGTTTTGGTATATACCTACACAAAGATTTGTTTTATGTTTTTG
GGCTTGTAAAGGACTTTGATGGTGTGAATATATAAAAGTAAAGGTCAAGC
AAACATTATCGTATAATTTAGAAATGGTTTTTATATGTTGATGTGGAGTA
CAATTTGAAAAATATTTCTTCGTTGAAAAGTTGGATTAAACGAGAAGAAT
TTGTTGTGAATAAAATACAGACTTACCGAACTTACAGAAATAAAATGGCT
CGACATTGGTGTGTTTTGGTCTGCTTTTTATTACTGATGAAAAATGTCAA
CCCAATGATTTGGATGTAAGTATGAAATTTATCAACTTTACTTTAGCTTG
TTGAAAAAAATCCCAAGGTAAAAACTAAAAATAAGGCCAAGCACCGTTAT
CGTCTGATTTTAAAATAACGTTTTCCTATCTTTTTTTTCCGTCAAATTTC
GTAATTTGACCGCAAATTGACGGAAAAAAGAGCTAGAGTAAACGTCAAAC
CAAAATAGTAGTGTCATCTCTTATAAGGAGTATTAAGTGCTTTCACAAAA
GATGCACATGCGAAACAAGCGCAAAATCAACGGGAAAATTTTTCAGCTAA
AAACACCGCCAGCTATGGGGTAATAAAAGGGTAAGCGGTGCTAAATTTAC
TGACTGCTGTTGTGGTGCACTAAGATTCCACTGACTTTTCGGTATTTGTC
CGCTTTTTTTTCCGGGATAGCCGATGAAATTGGAATGGTTTTTTCTAAAG
AAATGGGAAATACAATCTTGTGTTAACTTTCAAAGCTCCCGAACTTTCCG
AAGCTCATTTTTCAACTACCTGGAGTCTTTGTCTCTTTCCGCCAGAAAAG
TATCGCTGGAATATTAGTGCAGGAAGTGAAATCTTGTGCAAAACGGCGGT
AGGAAGCAATTTGGCATCCCCTGTTTATTGACTATTTTTTCTCCCGGGAG
GGGTAACCTAGGCATGTTTATGTTTACAGTTTATGTAGTGTCGCCCTTTA
GGGTGCCTTTTTGGAATCTGGAAGTCCATGTAAAAAAGACAAAATAGGCT
TAATTCATTCAAGAGTAAACTAAAAACATTACATAATTTTTCAGAGTTGA
ATTAAAAATATCAAAAAATAATTAGTATCATTTTGGTCTGATATAGATGG
TCACAAATTATGATTCCAATTAGCGCAAATTACAAATTTTCCTTTGATCT
TTTTGGAAAGTAAAATATTCACACTTGAAGTGTGAAGCTCATTAGACGTC
GGAAACTTCAAAGGAAAAGTGTAAAATAATTGATGTAGACTTGATTATAA
TTTTGTAACAAAGCACAAAATTCTTATTTTGATTTACTAAAATAATTTTA
AACCCAATAAAGTTTTATTTTAAACCAGTTCTTAATTTGCGTTTCATTAT
AAAAGACAAAGGAAAACAAAAGAAATTTCAATTATCAATCCATTTCATTT
TGTTACTTTTGTAAAAGATATTTAGTGAGAAAATTTTCAATTTCAAAAAA
AAAGTACAATACAAGTAAGACTCAAAGGCAAAATGAATACATTAAACACA
TTAAACTTTTTCTTCGATTCTCAAGAAAATGAAGAAGAATTTTTGATTTA
TTCCTTACGAAACTGAAAACTGATACTCCACATACATACGGCATAAAAGC
TAACGCACATGTTGCTTCATAAGGCTTAGATGTGATCTTCTTGATTTATC
CTTCATTTCCGGAATATGTCAATCAAAGCCATCAAAGTATGACATGTTTA
CCATTCGATACAAACAAACACTCCCATCCATATATGTATATGACATCTTC
TAGGGAATGGCCAATTTTACATGCATGGGATTTTTCGGGGGTGAAAAATG
AAATTTACAAAAGATGATAATCATACAAAAGTTTGGAAAAGACCATCACT
GGGAAATACCTATTTTACACGCACATAGTTGCCTCGTTCAAATCATACCC
TTGATTCACAATCACACACATGCAAAAAAATACGTTTTTACAGGTCGAAA
TGCAAGAACCAATGCATTTAGAAGAGCAGTATTACACTGCAAAAATAAAA
AACCCATGCATAGTAAATATGTGCGATTTCACACCCCGAACTTTCAAACC
CACAAGGAAAATCACAACCCACCCCCAGAAATGGCCATTTGCCGTGCGAA
AATGGCTATTTCACACGCGTGAGTTTTTAAGATCTTTTCCTTATGAGACG
GAGGTATCTTTTACAACTAATTTTTAAAATCAATACATGTTTTTTTATAA
GAACATCTAAAATTTTTGAAGCCTTCGGGTGTTCTTAACTTTTTAAGCCT
TAAAAAGTTCTTAAAATGTTCTTATTTTCCCCATTTTTTGAGTATTTTTG
CCCATTTTCCTAAGAAATCGGTTGTTTTTGAGTCTCTAAAGCCTTAACAT
TTTGGCCATGTTCTTATATAGTTTGTTCTTATAAAAAACGTGTACATCTG
TTTTTATCTTTCAGGCATTTGGGAACACAAACAAGCACAATNCGTGTATA
TCTGTTTTTATCTTTCAGGCATTTGGGAACACAAACAAGCACAATATCTT
CAAAAAGTATCGCAAAGAACTTTTGTAACACATTGAACCTACACCCTTTC
CAACGGACAGTATGCAATAATTTTACAGACCTGATCCCAAGTGTAGCAGA
AGGTATTCGATTAAGTATAGAAGAATGTCAAGAACAATTTCAAACGAGAA
AATGGAACTGCAGTATCATGGCAGGTGGAAACTCCATATTTGGTCCCATG
TTACAAAAAGGTATAGAATTTGTTTTATTTTGGGGTGATTACTTATATTC
ATGTTCGTAAAGTTTCCTGTGATTTTTGTCCCACAGTCTGCCCTGACCAC
TCAGACCCTGACTCTGCATAATTCAAACACAATTACTTCGATTTTGGTAC
AAAGAATTTAGGCCGAAAATTTTAAGGTACTTGGATGAAAAATCTCTAAA
ATTGTATAATTAATCTTTTGTCGATATGCTGAAAAAAAATTTCTTTGGGA
GTTGTGGGTGACCATGAGTCTTACTACTACGTTCACAAGCGATAAGCCAC
TATTAAGATCCCATTAAGACGAATTATAAATATTTTGCACAATGTGATAA
TACCTCTAAGCTTAAAATGACAAATTTTTTAAAAGGCTGCCAATTCTTAA
AAAATTTGGAAGGTTCGACAGCACAAAGTTAAAGTCCTAAATATATAACG
ATACTGGAAAAAGAAAATCAGAGCGGGCGGCGTTGAACAGTTTCAACAGT
TTTTTGGAAGCTCTATCAAAAAAAGTTTAAAATTTGTATTCATTCAAAAT
GGTAGCCCAAGTAACGGTGAACGTTAAGTTTCACAGAAGATTAAAAAAGT
TTATTAGATGACGGAGCTGTTAAAAGACGATACCAAGCTGATCTAAGACT
ATCCAATTATCGGATGATCTGAGTTAATTGGAACTTAATATTTCCCATGA
GAAAATAACCTTTGATATCACCTAACAGCAGCAGATGCTAAGGAGGCTCT
TAACTCAACGACGTTAGCGCATGCGCGACTTCTTCGAAATCCTTCCGTCA
CGTGAGATTAGATTCGTCAAAATGTCAAACGACGAAATGTTTGTATGTGT
GACGGAGTCAATATGTAATGGCTACGTTCTTTGATTCTAGTTAACTTGAG
CCCTAGTTTTGTATACCAAAATTTAAGTTAAGTTTTCTTCTATACAATCA
AATAAGAATCAACAAAGAATCTTTATCCGTAAGCCCCGGGGGGCATGGCA
AACCGGGCCCTGTGTATACTTTTTTGGCTCACCCGGCAGTATAATATACA
CCTTGCCGAGTGACACGAGCCGGAATGTTCTGCCCCCGTCTTTTAAGAAG
TAAACAGTACTTGAATAATTCTACATAAATTCTAATAAAAAGCGCATTTT
CTTAATGCCAATTAGCAAAGGAAGCAAGATATTAAAACAGTTTTTTAAGG
AGAAAAGACTTTTCTTGAAGGAAATTTATTAAGAAATTGCTAGATGGATT
AAGAAAATGAAATGCTTCCGGATTTAAACTGTAGACTACCTGTGAATAAA
GTTTGTATGTTACCGTTGATAAAGTTAGTAGAAAAATAACCGAGAGTGCT
ATAATGATATGGAATGTTTAATCCGTTTTGATTTTAAGTTAGAAATATGG
TTTTTATAAGAACTTTAAATGATATTAAAACCGAGCACATTAATGCCTCG
AGATTGTAATGGATATGAAATATTACCAGGCTCAACGAAAGTAGACACAG
AAATAACTGTATTAATTTACTGGGTAAATTTTCATGATAAAATTATCTAG
CAAATTTAGAATCAAACATAATTTCTTATGAATCGATATGTGTCGAAATC
ACATTTTCTTGATTCGAGTTTCTTAAAAATTGATTGATGGATTGATATGA
TGCTGTAGCACAGCTTGGTATCATATCGGCTTATCACCCATTGTACAGGC
CGTCTCAGGTCTCGCCGCTAACCTTTATAAGTATTACCTACTATTATCTT
ACTGTATGAAATCATAATAAAAGTTTTGACTAAACCACACGTGCCGCCGA
CTAACAAATGCCATCTTAGAATATTAGCATTTTAAAAACATTTCAAATAG
GTTACACGTTTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTT
CGAGGCCCAAAAATTTAAGAACATTCTAAGAACATACTGAGGCTTTGGAT
ACTTAAAAACATGCAATTTCTTAAGAAATTACATCAAAATGCTCAAAAAA
TGCTGAAAATAAGAACATTTTAAGAACATTAGAACATTTTTAGGCTTCAA
ATCCAAAAAACTAAGAACATCCGAAGGCTTCGAAAACTTTTGACGTTCTT
ATAAAAAAAAAAGGTGTATGTGGCATGTTCGAAAATGCCTTTAAAAATGT
AAGCTCTTTCAAAATAACCCTTTTTGAAATATGATATCATAAATAAGAGG
TAGGTCAAAATTCAGTAACACTGCAATTCTTAAAACTCGGATTATTGCTT
TTCCAAGATACTTTGTGATATTTTCGCTTCAAAATAATTTGACTCAAAAA
TATCGAAAATTGGATAAAAATGTGACGACACACATTCGTCGGGAAGATTT
GTCGAAAAAAATCATCACTCCTCGACGAATTTACGTTTTAAATTACGTCT
TTCTTCTAGTTTGACGTCAACAATTAATGACAATAGAGAGATAATAGAAT
CATCTATCAAGAAAAGTTCAATCAATTGTTAACAATCCTTATCTCATTAA
TACCTGACTACAGACCTTCTCTGTTTCAGTCCTAACATCACATGTCTCTT
CTAAGTTAGAAAAATATATCGAGGTAGATACCTTGTCGGCCATTTTTACG
CCGGCCCTCATCGGCCGAAATTGGGAAAAAAATTTTGGCGTAATAAGGGC
CAGTGTAAAAGGGGCCGGCGCTAAATTAGGACTGGTGTCAAAAAGCTGAC
AAGGCACTAAATAATTGCATGGCAAGATTACGATAAATACATTCTGCGAA
GTGTAGAAGAATCTTGGCCTGTGCTTTCAAAAATAGTTAAGTAAGAGTTT
TGGCCTATAATAGGGGAGTGGTCCTGAGTTATGTCTTTTTGACAGAAAAT
CTCAAAATTTCATTTTGAGAATTTTCATTAAAAATATCTTTCACGTCAAA
ATCAGAACACAAAGCTATCTTAAGGTAAAATTGATGACTTTCATACATGG
ATATGACCTAATTAACAAGTTTCTGGGAAAATACGGACACAAAAAATGTA
TGCGGTAACATCAGTCAAGTTGTTAAGTTGTACTTATAATAGTTCTGTGA
ATTACTCAATTCAAAAAAAGCTGGATAGAGTGAGAGAAATACGTAAATAA
CCACGCCAAACGTATTCGGTAATTTTCTAGAAAATGATTATTTTACGTAT
TTCAATTTCTATTTATTGATTAGTTCACTCTTATGGTGCGCTCAAAACAA
TTTATAAAGAATTCCTTTCAAAGTTGACGAAATACCGCTTTTGCAGCTTA
AATTATGTGGTAACCATGAACCCTCATAAAAACTGTTTATTATAAAAATT
TCCTAACAAACACCTTGAAAAAGAAAGATCTAAATTATTCCTTGTTCAAA
GAAACCCGGGGAAAAAATTCATACGCCCATTTGCAAAAAGTCTCACGCCC
ATTTACTAAAAGTGTCACTCTAGATCAGATTAAGCTTAAAGTTGCCTTAT
TTTCGTCCGACTTTATTGGTCTGAAAATACCTACAAACCACACCCCGAAA
ACTATTTTTCGTGTTGGTAAAACTGATGAAAAGTAATTGGTTGAAATAGT
TTTAATCTATTTTTTCCTTTATCTTCTTTAGCAAGTCGAGAATCTGCCTT
CATCAGTGGAATCACAGCAGCAGGCGTTGCTTTCTCCGTCACAGAGGCGT
GTGCAGAAGGGCGTTCATTACATTGTCGTTGCGATAACAGTATAAGAGGT
CAAACAGAAGAAGGTTGGAAATGGGGTGGGTGTAACCGCCCGATCTCATA
CGGCATCTGGTTTTCACAATTATTTATTGATATGGTGGAGATAAAAGTTA
AGAAAAGAAGAGATCCAAGACGAGCAATGAATCTACATAATAATAGAGCT
GGACGTGAGGTAAGACACTGGCGTTAATTTGTTTACTTTTTAAGGGGTCA
TGGCAATTAACAAAACAAATATGTATAATATCATGAAACACATCCTTAGA
AATATAAAAAAACACAGTCCTTCTCTATGACTATAGGGTACTTATTTCTC
GGGGAAAAAACCCTAAAATCTTGATGGTGGAGCATCATTTTAAAGACAAT
TTCTTTTTTCTTCAGGTGGAAGGTTTGGGAAACTTAGATTACTTTTACTA
TGGCGTCTTTCTGTTAAAATTTTACAAATTTTGTGGTGTTTTTTTTCAGA
TTATCCGCCATAACTTATGGACAAAATGCAAATGTCATGGAATGTCAGGG
AATTGTAATTTAAAAACATGTTGGCTCGCTCAACCAGGATTTCAACAGGT
AAGCAAGACAAAAGACAATTACTTTTTCACAAACAATCGGACTCCCATTT
TTCTAACTTTCTACTTAGAATTTCGGAATTTTCGATCATCCTTTCCGCAT
TAGCGCCAATGATTTTAAAGAGGGGTTGGTTGAATGACGTCAAATATGAT
TACGTTGAAATGATTCTAGATCGATGGAATTTGACGTCATTTGTGACCCT
AGTAAACTCAAATGCAAAACCGGCTGTAGCACTAGCATTAATTAAAGAAT
AAGACATTTCGTGAAATTTTGTCAGATTCAGTAATGTTTTTTTGTAATCC
AATCTAATTTTTTGATAAACCAGTACATGTGTTTATCATGGCTCTCTGTA
ATTCTAAAATGCTTCCTGTCTTCTATATTCTCAGCTTGGTAAAATGTTAA
AAGATCGTTATGATTCCGCACATGAGATGGATTTCGAATTCAAAATCAAG
AAAAACGGTAAAAAGAGATTCAAGAAATTAATACCACGATACAAAGAATA
TTTACCACCATCAACATTAGACTTTGTTTATTATGAAGAATCACCTAATT
ATTGTGAAAATAATAACAGTTTGGGTATTATCGGTACCCGCGGCCGCGAG
TGTAATATAACGTCCGCCGGAGTTGACGGTTGCGATCAGATGTGTTGCAG
GCGTGGATTCAATGTAAAAATTGTACAAGAAACTAAAGCATGTGACTGTA
AATTTATATGGTGTTGTCATGTCAAATGTAAGAAATGTACAGAAGCAGTA
CCTAGGTACACGTGTAAGTGAGCACGTTGGACCTACTGGTCACGTGACTG
TCGAAACCGATAAAAAAGAGAGAGAAAAATGTTCTAGATGGTGGAATTTT
TATTGTATGTGTTTGTATGTGAAAACATTGGTATCTATGACAATGGCCTC
AACAATGAAAATATGCAAATAGAAGAACAAAAAAGAACGGGAAAAATTAG
CGTAAGAGAGAGAAATATCTACGCGGATAAAATGAAAAAATCGATGCAAC
TGCTGCTGAAGTTATGTGTGTACAAAGTTTCTTCTAACAAGAAGTAAGAT
TTTTCTTGGTATACTGAAATCTGTAAAAAACTGATGTAGAAGAAAAGAAA
AGTTAAAAAAGCTTACAAGAGAACATCTTTGATAAAATAGACTTATGAAA
AATAATGCTGACATCAACTAAAATTGTCTAACCACTACGGTATGTTTGTT
TATGTTCTTTTTTAATGATCTTTAATCATAAATCCTTTGTAAGTCTTTAT
AGTACAACTTTTTAGTTTTATTACCCCCGTGACCCTAACTTTCAATTTTC
TATCCATCCACATCTTCCTAACCTGTTCGCGTTTAAGCCATAAATGTTAA
ATTTTTTTCAGATAAAAAAAACTGCCATTTTTGAGTTCACCATCTTATAA
CAAAGCATATCCACCAACCTTTAACCTGACCCTACCTCCCTCCTCAGACC
TGGCTTTATCCTTTGACCCACACCCCTTATATCCCCCTCTGACCCTTTGA
TCTTTCTTTGTCCCCTATCCTCTCCCTTCTTTAACCCAGGAATTTTCTAT
AATTACAAAAAATGGAAGACTTAATCTTCTAGTGAAGCCACTACACAATA
CCTAGTCAAAACCTTTCCTGAAGCGTGAAACTTTCTCCATCTTCATTTGG
AAAGTTTCAAGTTTCCCAAGCTTCCAGGCTAGACAGAACTAGGCCAACTA
AGCTACCAGATTTTAGCCTAGTTGAGCTTTAGTTGAGCTTTTACTTTTGA
AGATGAGAATTTTATGATTCTTGCTTAAACGTGTGGATAAGTGTTTATAC
CCAATAAATTTTATGCAATATTTTTGTTTGGACTTAATTTTTTTTTTCAA
CATGTAGTTATAGGTTTTATTATTTTAACAAGGAGATGTAGAAAGTTTTA
TTATTTATAAATATTCATTTATTATCATCATTTTTTGTGACCATGTTATC
ACATGATTATGACCCCGCCCTGAAAAAAACCTTTTATTTTTTTGAAAATT
TATTATTTAGTATATACTGTAGAAAATTGAAGTTAACAATAATTATTATT
TAAAAACAGAAAGATTGGTCCAGTAATTTGGTACTTTGTGAACCCTGAAT
TCATGATTTGCACCATTGTAATGACTTCCACCGACCTAACAGACGATTGA
CTGAATGTGATCTAATGAATGATTTTACATCACTTACGCAACCAGCTGTT
GGATCCGTGATGTAACGTCAGAAGACATTGCCATGGTGCATATCATGAAC
AGAGACTTTAAAGCTCTGATACCACTG

Coding sequence (CDS) from alignment at sc0000028:166922..176298-

>TCONS_00003473 ID=TCONS_00003473|Name=TCONS_00003473|organism=Clytia hemisphaerica|type=CDS|length=5385bp|location=Sequence derived from alignment at sc0000028:166922..176298- (Clytia hemisphaerica)
CTTGGTAAAATGTTAAAAGATCGTTATGATTCCGCACATGAGATGGATTT
CGAATTCAAAATCAAGAAAAACGGTAAAAAGAGATTCAAGAAATTAATAC
CACGATACAAAGAATATTTACCACCATCAACATTAGACTTTGTTTATTAT
GAAGAATCACCTAATTATTGTGAAAATAATAACAGTTTGGGTATTATCGG
TACCCGCGGCCGCGAGTGTAATATAACGTCCGCCGGAGTTGACGGTTGCG
ATCAGATGTGTTGCAGGCGTGGATTCAATGTAAAAATTGTACAAGAAACT
AAAGCATGTGACTGTAAATTTATATGGTGTTGTCATGTCAAATGTAAGAA
ATGTACAGAAGCAGTACCTAGGTACACGTGTAAGTGAATTATCCGCCATA
ACTTATGGACAAAATGCAAATGTCATGGAATGTCAGGGAATTGTAATTTA
AAAACATGTTGGCTCGCTCAACCAGGATTTCAACAGCAAGTCGAGAATCT
GCCTTCATCAGTGGAATCACAGCAGCAGGCGTTGCTTTCTCCGTCACAGA
GGCGTGTGCAGAAGGGCGTTCATTACATTGTCGTTGCGATAACAGTATAA
GAGGTCAAACAGAAGAAGGTTGGAAATGGGGTGGGTGTAACCGCCCGATC
TCATACGGCATCTGGTTTTCACAATTATTTATTGATATGGTGGAGATAAA
AGTTAAGAAAAGAAGAGATCCAAGACGAGCAATGAATCTACATAATAATA
GAGCTGGACGTGAGGCATTTGGGAACACAAACAAGCACAATATCTTCAAA
AAGTATCGCAAAGAACTTTTGTAACACATTGAACCTACACCCTTTCCAAC
GGACAGTATGCAATAATTTTACAGACCTGATCCCAAGTGTAGCAGAAGGT
ATTCGATTAAGTATAGAAGAATGTCAAGAACAATTTCAAACGAGAAAATG
GAACTGCAGTATCATGGCAGGTGGAAACTCCATATTTGGTCCCATGTTAC
AAAAAGATGGCTCGACATTGGTGTGTTTTGGTCTGCTTTTTATTACTGAT
GAAAAATGTCAACCCAATGATTTGGATCTTGGTAAAATGTTAAAAGATCG
TTATGATTCCGCACATGAGATGGATTTCGAATTCAAAATCAAGAAAAACG
GTAAAAAGAGATTCAAGAAATTAATACCACGATACAAAGAATATTTACCA
CCATCAACATTAGACTTTGTTTATTATGAAGAATCACCTAATTATTGTGA
AAATAATAACAGTTTGGGTATTATCGGTACCCGCGGCCGCGAGTGTAATA
TAACGTCCGCCGGAGTTGACGGTTGCGATCAGATGTGTTGCAGGCGTGGA
TTCAATGTAAAAATTGTACAAGAAACTAAAGCATGTGACTGTAAATTTAT
ATGGTGTTGTCATGTCAAATGTAAGAAATGTACAGAAGCAGTACCTAGGT
ACACGTGTAAGTGAATTATCCGCCATAACTTATGGACAAAATGCAAATGT
CATGGAATGTCAGGGAATTGTAATTTAAAAACATGTTGGCTCGCTCAACC
AGGATTTCAACAGCAAGTCGAGAATCTGCCTTCATCAGTGGAATCACAGC
AGCAGGCGTTGCTTTCTCCGTCACAGAGGCGTGTGCAGAAGGGCGTTCAT
TACATTGTCGTTGCGATAACAGTATAAGAGGTCAAACAGAAGAAGGTTGG
AAATGGGGTGGGTGTAACCGCCCGATCTCATACGGCATCTGGTTTTCACA
ATTATTTATTGATATGGTGGAGATAAAAGTTAAGAAAAGAAGAGATCCAA
GACGAGCAATGAATCTACATAATAATAGAGCTGGACGTGAGGCATTTGGG
AACACAAACAAGCACAATATCTTCAAAAAGTATCGCAAAGAACTTTTGTA
ACACATTGAACCTACACCCTTTCCAACGGACAGTATGCAATAATTTTACA
GACCTGATCCCAAGTGTAGCAGAAGGTATTCGATTAAGTATAGAAGAATG
TCAAGAACAATTTCAAACGAGAAAATGGAACTGCAGTATCATGGCAGGTG
GAAACTCCATATTTGGTCCCATGTTACAAAAAGATGGCTCGACATTGGTG
TGTTTTGGTCTGCTTTTTATTACTGATGAAAAATGTCAACCCAATGATTT
GGATCTTGGTAAAATGTTAAAAGATCGTTATGATTCCGCACATGAGATGG
ATTTCGAATTCAAAATCAAGAAAAACGGTAAAAAGAGATTCAAGAAATTA
ATACCACGATACAAAGAATATTTACCACCATCAACATTAGACTTTGTTTA
TTATGAAGAATCACCTAATTATTGTGAAAATAATAACAGTTTGGGTATTA
TCGGTACCCGCGGCCGCGAGTGTAATATAACGTCCGCCGGAGTTGACGGT
TGCGATCAGATGTGTTGCAGGCGTGGATTCAATGTAAAAATTGTACAAGA
AACTAAAGCATGTGACTGTAAATTTATATGGTGTTGTCATGTCAAATGTA
AGAAATGTACAGAAGCAGTACCTAGGTACACGTGTAAGTGAATTATCCGC
CATAACTTATGGACAAAATGCAAATGTCATGGAATGTCAGGGAATTGTAA
TTTAAAAACATGTTGGCTCGCTCAACCAGGATTTCAACAGCAAGTCGAGA
ATCTGCCTTCATCAGTGGAATCACAGCAGCAGGCGTTGCTTTCTCCGTCA
CAGAGGCGTGTGCAGAAGGGCGTTCATTACATTGTCGTTGCGATAACAGT
ATAAGAGGTCAAACAGAAGAAGGTTGGAAATGGGGTGGGTGTAACCGCCC
GATCTCATACGGCATCTGGTTTTCACAATTATTTATTGATATGGTGGAGA
TAAAAGTTAAGAAAAGAAGAGATCCAAGACGAGCAATGAATCTACATAAT
AATAGAGCTGGACGTGAGGCATTTGGGAACACAAACAAGCACAATATCTT
CAAAAAGTATCGCAAAGAACTTTTGTAACACATTGAACCTACACCCTTTC
CAACGGACAGTATGCAATAATTTTACAGACCTGATCCCAAGTGTAGCAGA
AGGTATTCGATTAAGTATAGAAGAATGTCAAGAACAATTTCAAACGAGAA
AATGGAACTGCAGTATCATGGCAGGTGGAAACTCCATATTTGGTCCCATG
TTACAAAAAGATGGCTCGACATTGGTGTGTTTTGGTCTGCTTTTTATTAC
TGATGAAAAATGTCAACCCAATGATTTGGATCTTGGTAAAATGTTAAAAG
ATCGTTATGATTCCGCACATGAGATGGATTTCGAATTCAAAATCAAGAAA
AACGGTAAAAAGAGATTCAAGAAATTAATACCACGATACAAAGAATATTT
ACCACCATCAACATTAGACTTTGTTTATTATGAAGAATCACCTAATTATT
GTGAAAATAATAACAGTTTGGGTATTATCGGTACCCGCGGCCGCGAGTGT
AATATAACGTCCGCCGGAGTTGACGGTTGCGATCAGATGTGTTGCAGGCG
TGGATTCAATGTAAAAATTGTACAAGAAACTAAAGCATGTGACTGTAAAT
TTATATGGTGTTGTCATGTCAAATGTAAGAAATGTACAGAAGCAGTACCT
AGGTACACGTGTAAGTGAATTATCCGCCATAACTTATGGACAAAATGCAA
ATGTCATGGAATGTCAGGGAATTGTAATTTAAAAACATGTTGGCTCGCTC
AACCAGGATTTCAACAGCAAGTCGAGAATCTGCCTTCATCAGTGGAATCA
CAGCAGCAGGCGTTGCTTTCTCCGTCACAGAGGCGTGTGCAGAAGGGCGT
TCATTACATTGTCGTTGCGATAACAGTATAAGAGGTCAAACAGAAGAAGG
TTGGAAATGGGGTGGGTGTAACCGCCCGATCTCATACGGCATCTGGTTTT
CACAATTATTTATTGATATGGTGGAGATAAAAGTTAAGAAAAGAAGAGAT
CCAAGACGAGCAATGAATCTACATAATAATAGAGCTGGACGTGAGGCATT
TGGGAACACAAACAAGCACAATATCTTCAAAAAGTATCGCAAAGAACTTT
TGTAACACATTGAACCTACACCCTTTCCAACGGACAGTATGCAATAATTT
TACAGACCTGATCCCAAGTGTAGCAGAAGGTATTCGATTAAGTATAGAAG
AATGTCAAGAACAATTTCAAACGAGAAAATGGAACTGCAGTATCATGGCA
GGTGGAAACTCCATATTTGGTCCCATGTTACAAAAAGATGGCTCGACATT
GGTGTGTTTTGGTCTGCTTTTTATTACTGATGAAAAATGTCAACCCAATG
ATTTGGATCTTGGTAAAATGTTAAAAGATCGTTATGATTCCGCACATGAG
ATGGATTTCGAATTCAAAATCAAGAAAAACGGTAAAAAGAGATTCAAGAA
ATTAATACCACGATACAAAGAATATTTACCACCATCAACATTAGACTTTG
TTTATTATGAAGAATCACCTAATTATTGTGAAAATAATAACAGTTTGGGT
ATTATCGGTACCCGCGGCCGCGAGTGTAATATAACGTCCGCCGGAGTTGA
CGGTTGCGATCAGATGTGTTGCAGGCGTGGATTCAATGTAAAAATTGTAC
AAGAAACTAAAGCATGTGACTGTAAATTTATATGGTGTTGTCATGTCAAA
TGTAAGAAATGTACAGAAGCAGTACCTAGGTACACGTGTAAGTGAATTAT
CCGCCATAACTTATGGACAAAATGCAAATGTCATGGAATGTCAGGGAATT
GTAATTTAAAAACATGTTGGCTCGCTCAACCAGGATTTCAACAGCAAGTC
GAGAATCTGCCTTCATCAGTGGAATCACAGCAGCAGGCGTTGCTTTCTCC
GTCACAGAGGCGTGTGCAGAAGGGCGTTCATTACATTGTCGTTGCGATAA
CAGTATAAGAGGTCAAACAGAAGAAGGTTGGAAATGGGGTGGGTGTAACC
GCCCGATCTCATACGGCATCTGGTTTTCACAATTATTTATTGATATGGTG
GAGATAAAAGTTAAGAAAAGAAGAGATCCAAGACGAGCAATGAATCTACA
TAATAATAGAGCTGGACGTGAGGCATTTGGGAACACAAACAAGCACAATA
TCTTCAAAAAGTATCGCAAAGAACTTTTGTAACACATTGAACCTACACCC
TTTCCAACGGACAGTATGCAATAATTTTACAGACCTGATCCCAAGTGTAG
CAGAAGGTATTCGATTAAGTATAGAAGAATGTCAAGAACAATTTCAAACG
AGAAAATGGAACTGCAGTATCATGGCAGGTGGAAACTCCATATTTGGTCC
CATGTTACAAAAAGATGGCTCGACATTGGTGTGTTTTGGTCTGCTTTTTA
TTACTGATGAAAAATGTCAACCCAATGATTTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001931XLOC_001931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003473-exon-sc0000028-1575043694:175884..176298TCONS_00003473-exon-sc0000028-1575043694:175884..176298Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1575043694:173439..173680TCONS_00003473-exon-sc0000028-1575043694:173439..173680Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1575043694:169590..169867TCONS_00003473-exon-sc0000028-1575043694:169590..169867Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1575043694:169201..169299TCONS_00003473-exon-sc0000028-1575043694:169201..169299Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1575043694:166922..168814TCONS_00003473-exon-sc0000028-1575043694:166922..168814Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1510915933:175884..176298TCONS_00003473-exon-sc0000028-1510915933:175884..176298Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1510915933:173439..173680TCONS_00003473-exon-sc0000028-1510915933:173439..173680Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1510915933:169590..169867TCONS_00003473-exon-sc0000028-1510915933:169590..169867Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1510915933:169201..169299TCONS_00003473-exon-sc0000028-1510915933:169201..169299Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1510915933:166922..168814TCONS_00003473-exon-sc0000028-1510915933:166922..168814Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1491911889:175884..176298TCONS_00003473-exon-sc0000028-1491911889:175884..176298Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1491911889:173439..173680TCONS_00003473-exon-sc0000028-1491911889:173439..173680Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1491911889:169590..169867TCONS_00003473-exon-sc0000028-1491911889:169590..169867Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1491911889:169201..169299TCONS_00003473-exon-sc0000028-1491911889:169201..169299Clytia hemisphaericaexon
TCONS_00003473-exon-sc0000028-1491911889:166922..168814TCONS_00003473-exon-sc0000028-1491911889:166922..168814Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Wnt3TCONS_00003473-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:166922..176298 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.27276	5.10031	3.4986	2.41467	286.781	203.667	183.372	190.382	90.4592	162.773	85.6539	84.8104	10.6777	10.1152	0.0444712	0.0318162	12.5228	11.4093	19.5645	21.7505	16.1163	18.0978	13.2151	15.0116	9.05324	11.8946	6.45258	6.32254	4.79542	5.84522
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005817Wnt
IPR018161Wnt_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005102receptor binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0016055Wnt signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016055 Wnt signaling pathway
cellular_component GO:0005576 extracellular region
molecular_function GO:0005102 receptor binding
Blast
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BLAST of TCONS_00003473 vs. Swiss-Prot (Human)
Match: WNT3 (Proto-oncogene Wnt-3 OS=Homo sapiens GN=WNT3 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 6.282e-99
Identity = 157/341 (46.04%), Postives = 216/341 (63.34%), Query Frame = 3 
Query:  402 PMIW-MHLGTQTSTISSKSIAKNFCNTL-NLHPFQRTVCNNFTDLIPSVAEGIRLSIEECQEQFQTRKWNCSIMAGGNSIFGPMLQKASRESAFISGITAAGVAFSVTEACAEGRSLHCRCDNSIRGQTEEGWKWGGCNRPISYGIWFSQLFIDMVEIKVKKRRDPRRAMNLHNNRAGREIIRHNLWTKCKCHGMSGNCNLKTCWLAQPGFQQLGKMLKDRYDSAHEMDXXXXXXXXXXXXXXXLIPRYKEYLPPSTLDFVYYEESPNYCENNNSLGIIGTRGRECNITSAGVDGCDQMCCRRGFNVKIVQETKACDCKFIWCCHVKCKKCTEAVPRYTCK 1418
            P+ W + LG Q +++ S+ +    C ++  L P Q   C N+ +++PSVAEG++L I+ECQ QF+ R+WNC+ +    +IFGP+L KA+RESAF+  I +AGVAF+VT +CAEG S  C CD+  +G   EGWKWGGC+    +G+  S+ F D  E     R D R AMN HNN AGR  I  ++  KCKCHG+SG+C +KTCW AQP F+ +G  LKD+YDSA EM    +  +  +   + L  +Y  + PP+  D VYYE SPN+CE N   G  GTR R CN+TS G+DGCD +CC RG N +  +  + C C F WCC+V C++C      +TCK
Sbjct:   24 PIWWSLALGQQYTSLGSQPL---LCGSIPGLVPKQLRFCRNYIEIMPSVAEGVKLGIQECQHQFRGRRWNCTTIDDSLAIFGPVLDKATRESAFVHAIASAGVAFAVTRSCAEGTSTICGCDSHHKGPPGEGWKWGGCSEDADFGVLVSREFADARE----NRPDARSAMNKHNNEAGRTTILDHMHLKCKCHGLSGSCEVKTCWWAQPDFRAIGDFLKDKYDSASEM--VVEKHRESRGWVETLRAKYSLFKPPTERDLVYYENSPNFCEPNPETGSFGTRDRTCNVTSHGIDGCDLLCCGRGHNTRTEKRKEKCHCIFHWCCYVSCQECIRIYDVHTCK 355
The following BLAST results are available for this feature:
BLAST of TCONS_00003473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT36.282e-9946.04Proto-oncogene Wnt-3 OS=Homo sapiens GN=WNT3 PE=1 ... [more]
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