TCONS_00003384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003384
Unique NameTCONS_00003384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003384 ID=TCONS_00003384|Name=TCONS_00003384|organism=Clytia hemisphaerica|type=transcript|length=641bp
caaagtcaatttcccagtggagctgaaattttggggtatttttagtaccg
gggacgaaattttggccaaattttccggTATAGCTGGggtctcagtgggt
ctgtgacacaggggtgttatacaTGATATTGTGAAACCATCCATTCATCC
GTGTATCCCCTTAGTAATCATATGAAAGGTTATTTGTCTCGacctgaaaa
tatataaatattttcactattttcaaACTTGTTTACAAAATACTCGGTTA
TGAGTAATAAGCTTTAAATGGTACTTCACTGCTGCTCCACGCCAAGCTGG
TGCAACCTTTCGTACTATCCATCCATCATCAATATACTGCATGTAAAGTA
CAGAGACAAGTTTTGGTTTCAAAAGCCAGGAAAttaaatatggtcagatt
tcaATAGTTAACGTGAAGCTTATTTATCCAATATAGTTTATAGATTTCCA
ACAAATATAGGCTAGGGATTTGTATTGTATAAACATCACAGATGGCCTTG
GAGTTTATAATATTCTCCTTTGTTGGCGATCTTTCCcccctctctctttc
tctttcttttgGATATCTTTTTTTGTATGATTTGCAGTGTTTAAATTTCA
ATTTGGCTTTTGTTATTTGGCGTTTTCTCTGATTATATAGT
Run BLAST on NCBI

transcript from alignment at sc0000026:386537..387177

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003384 ID=TCONS_00003384|Name=TCONS_00003384|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000026:386537..387177 (Clytia hemisphaerica)
ACTATATAATCAGAGAAAACGCCAAATAACAAAAGCCAAATTGAAATTTA
AACACTGCAAATCATACAAAAAAAGATATCcaaaagaaagagaaagagag
aggggGGAAAGATCGCCAACAAAGGAGAATATTATAAACTCCAAGGCCAT
CTGTGATGTTTATACAATACAAATCCCTAGCCTATATTTGTTGGAAATCT
ATAAACTATATTGGATAAATAAGCTTCACGTTAACTATtgaaatctgacc
atatttaaTTTCCTGGCTTTTGAAACCAAAACTTGTCTCTGTACTTTACA
TGCAGTATATTGATGATGGATGGATAGTACGAAAGGTTGCACCAGCTTGG
CGTGGAGCAGCAGTGAAGTACCATTTAAAGCTTATTACTCATAACCGAGT
ATTTTGTAAACAAGTttgaaaatagtgaaaatatttatatattttcaggt
CGAGACAAATAACCTTTCATATGATTACTAAGGGGATACACGGATGAATG
GATGGTTTCACAATATCAtgtataacacccctgtgtcacagacccactga
gaccCCAGCTATAccggaaaatttggccaaaatttcgtccccggtactaa
aaataccccaaaatttcagctccactgggaaattgactttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001879XLOC_001879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003384-exon-sc0000026-1491911889:386537..387177TCONS_00003384-exon-sc0000026-1491911889:386537..387177Clytia hemisphaericaexon
TCONS_00003384-exon-sc0000026-1510915933:386537..387177TCONS_00003384-exon-sc0000026-1510915933:386537..387177Clytia hemisphaericaexon
TCONS_00003384-exon-sc0000026-1575043694:386537..387177TCONS_00003384-exon-sc0000026-1575043694:386537..387177Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:386537..387177 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.73912	1.0411	1.48777	1.36458	0	0.0875156	0	0	0	0	0	0	0.0546184	0	0	0	0	0	0	0	0	0	0	0	0	0.0786926	0	0.240358	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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