TCONS_00015243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015243
Unique NameTCONS_00015243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015243 ID=TCONS_00015243|Name=TCONS_00015243|organism=Clytia hemisphaerica|type=transcript|length=860bp
CTTTACAAGCTGCAGACCATTTACTGGTGAGAGAATATGGTGATACATTT
TTGTTTGATACCACAAAACAACAACCTATCTTCATCCCACCTGTATTTCA
ATCcgtagaatttgaaaaatcatctAACGATACAGCTGTCCTTGATTATA
ACATCAAAGAACAGATGCAGAAAACCCTGGCAAATTTGACACGAAATTCA
CCAACCTATTGGTTTACTTCTGAATTACAAACATTTCTACACCTTCAAAA
CACCAGCCATCCTCGTGAGGATATCATCAGAGAAAATGAGTTCAGGAAAT
GGGtattaaacattaaaattaTGTACCTAACGCTCAATTATTTGAAGATT
GACAATCTTCACTAGCATCTGTAGCAGCTAACACAAGAACTGACGTTCTC
CTGCAAGTCTGTATCAATAAACTGAATACATTATCGCCAACGTCTTCTCT
GGTGACAGAATTTCAAACTTTATTCTTGAGACTCTCAAGAAAAGGAGGAA
TGAAAGCCCTTCGACGCAGAATTGAAAAACTGATCGAAAATAACTCTCCA
ATTGATTTCAATCTGAAATGGTTTTTCGGACTTGATATAGCTGAGTTAGC
TGGTGAAGAAGGCGAACATTGCAGCTTCGATGATTTAGTATCCTTGAAAG
ATGAAACCTGCCTACAAAATGCGATAATCCTTCATTCAGCTACGTTCCTC
ACCGACATTGCGAGCAAAGAGCATCAGGAGtttgattttctcattttctt
tcCTGCACGCAAACTACTAATTGGTATCGAATCAAAAAGGCAACTGACAG
ACACTGCTTTTACACAGTTGAACACTTACTATAGACTTTTTGAAGAAGGG
CTAAGTGATC
Run BLAST on NCBI

transcript from alignment at sc0000205:191025..191884

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015243 ID=TCONS_00015243|Name=TCONS_00015243|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at sc0000205:191025..191884 (Clytia hemisphaerica)
GATCACTTAGCCCTTCTTCAAAAAGTCTATAGTAAGTGTTCAACTGTGTA
AAAGCAGTGTCTGTCAGTTGCCTTTTTGATTCGATACCAATTAGTAGTTT
GCGTGCAGgaaagaaaatgagaaaatcaaaCTCCTGATGCTCTTTGCTCG
CAATGTCGGTGAGGAACGTAGCTGAATGAAGGATTATCGCATTTTGTAGG
CAGGTTTCATCTTTCAAGGATACTAAATCATCGAAGCTGCAATGTTCGCC
TTCTTCACCAGCTAACTCAGCTATATCAAGTCCGAAAAACCATTTCAGAT
TGAAATCAATTGGAGAGTTATTTTCGATCAGTTTTTCAATTCTGCGTCGA
AGGGCTTTCATTCCTCCTTTTCTTGAGAGTCTCAAGAATAAAGTTTGAAA
TTCTGTCACCAGAGAAGACGTTGGCGATAATGTATTCAGTTTATTGATAC
AGACTTGCAGGAGAACGTCAGTTCTTGTGTTAGCTGCTACAGATGCTAGT
GAAGATTGTCAATCTTCAAATAATTGAGCGTTAGGTACAtaattttaatg
tttaataCCCATTTCCTGAACTCATTTTCTCTGATGATATCCTCACGAGG
ATGGCTGGTGTTTTGAAGGTGTAGAAATGTTTGTAATTCAGAAGTAAACC
AATAGGTTGGTGAATTTCGTGTCAAATTTGCCAGGGTTTTCTGCATCTGT
TCTTTGATGTTATAATCAAGGACAGCTGTATCGTTagatgatttttcaaa
ttctacgGATTGAAATACAGGTGGGATGAAGATAGGTTGTTGTTTTGTGG
TATCAAACAAAAATGTATCACCATATTCTCTCACCAGTAAATGGTCTGCA
GCTTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008523XLOC_008523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015243-exon-sc0000205-1491911889:191025..191884TCONS_00015243-exon-sc0000205-1491911889:191025..191884Clytia hemisphaericaexon
TCONS_00015243-exon-sc0000205-1510915933:191025..191884TCONS_00015243-exon-sc0000205-1510915933:191025..191884Clytia hemisphaericaexon
TCONS_00015243-exon-sc0000205-1575043694:191025..191884TCONS_00015243-exon-sc0000205-1575043694:191025..191884Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:191025..191884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0544973	0	0.0639017	0.0991688	0	0	0.112603	0.0538765	0	0.400214	0.276065	0.0583303	1.21013	0.817204	0	0	0.0014567	0.0524091	2.01713	2.00673	0	0	0	0.170425	1.02116e-05	0.165925	3.90955	1.43806	0	0.0132032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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