TCONS_00002970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002970
Unique NameTCONS_00002970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002970 ID=TCONS_00002970|Name=TCONS_00002970|organism=Clytia hemisphaerica|type=transcript|length=2426bp
GTCATACCTTAGCTCATTGACTTTGGAGAGGTCTGATACacttttttgca
ttttaaaTGCTAGTATCATATCATTTTGATTAGGTTCTTGACCCATCGAA
GAAATCCAATATGGCGGCCATTTTAACCAGTTTTAGATATTCCTCACAAT
GGATTTGGATCCCCACGTCCATCACACGACAGTCAAACTGGAAGAGATGC
CTCATGCAGTTCCTGTCCATCAAGTTACAAGGTCCAATTCTCTCTCCATG
ACCCACGTTGGATCAATGTCTGACGGCCTATCTGATGACCCCTCTTCGCC
TGAATCAACAGCTTTTGATGATACTGATCTTCTTACTGCACCAAGTGTTG
GTATGCACGATGATGTCACAGATGAAGTCACCGCTCAATTAGCCGCTGCT
GGACCCATCGGAATGGCTGCTGCAGCCGCCATCATCACAGGCAAGAGACG
AAAGAagagctaccattttgaaacaAACCCCTCCATCAGAAAACGCCAAG
CAACTCGACTTTTACGGAAATTGAAACAACTCTTAACGGAATACACGACG
AGAGTAGGCCAACAAGCTTGTATCGTCGTCTGTTGTCCAGGGAAACTGGG
TGCATCTTTCAAATGTTTTGGAGCAGCACCACTGGAAAACATCGTCAAAA
ACCGTAAGAACATCATCATGGAGGATTTGGAGAACGCGCTCGCTCAACAA
GCTCCCTCAATACCTGACACCAACCCTGATCTTCACGAACTTCCGCCGCT
GGTGATTGAAGGAATCCCAACCCCGGTGGACAAGATGACACAGGCCCAAC
TTCGCGCCTTCATTCCCATCATGTTGAAATATTCTACTGGGCGTGGGAAG
CCAGGGTGGGGGCGTGACAACACTAAACCACCCTGGTGGCCAGAAGAAGT
TCCTTGGGCGAACGTGCGAAGTGATGTAAGAAACGAGATGGATAAACAAA
AGATCTCCTGGACAAACGCACTAAGGAAAGTGGTACGGAATTGTTATCGT
TATCACGGCCGCGAAGAACTTTTGGACGCGTTCGCTTCAGCCGACAACCA
AATGGAACAACACAACACTCAACAAACTCAAGTCTTCACGTCCCAATACC
CTCATCTTGTTCATACAATCAACAACGCGGACGGAACTGTCTCCATCATC
CAAGTGGATGCAACAGGTGCTGTGACCACACTGTCTGAATCAGCGAGTCA
ATCGGAAGCAACACAGGCTGTGGCGACGCTGGCTGAGGTAGCTGCTTCAC
AAGGTGAAGTGATATACGGTAGTCATTCGATGGACCACCATTCCACGTTA
ACGCACGACCACGGAGGTGTTGTGACGTCAATCAGTGAAAGCGCTCTCCA
TGATGGTCAACTTCTGCTCGGCGATGCGGTATCAGCTGCGGCTGCATTGG
TAGGTGTCCAAGACCAAAACACAGCTGTTGTTTCCATTCCGGTGCACGCT
GCGGCTGCCATGATGCAAATTCAAGGAACAAATTTGATACCTGTTTCCAT
AGCGAATGGTGGCGGGGGCGTTCAATTCATCGCCACATCTTCTCTATCTA
ATTTCCAACTTCAAGCCGCCAACGAACAACAAACTAACGCCCAACAAACC
GTCACACAAAACCGCCAGCCGCCCTCACTTTCTGCACAACCATCGGAAGA
TAATTTAGCGTCTATGGATGTTCCAATGACTGATCCCTCGCCACCCGTTT
CACCCTCTCCGCCCCTGGTACAAGAACAACATTCGGCCAACGAACTCGGA
GTTCATCAACATTCAACCAATGAGATGACAGTACATCAAAATTCGACCAA
CGAAATGGTAGTCCATCAAAATTCGACCAATGAAATGACAATACATCAAC
AGCAACCACCCAATGAGATTTCAGTTCCCATGGCTACACAGGCGGTTGAG
GTAGCAACCATGCATGATCAACAAACGAACTCTGTGACAGGCACTTGATG
AAGTTTGTGGCACGATTCTACGTTTCTGTTTTCCTTCTATCTTTCGGGTT
CCCCAGTCCAATCCAGTCCaatcctttttcaaaaaactgacaGTTGGACA
ATTGAATCTTGTTTTGATCAAAGTCAAACTTTTCAACTCTCCATTTCTTA
GAAGTCGATTGTGCTTGACAAAGTGTATAGTTTTACTTTAGTTCCAATAC
TTCTAAAGAAACATTTTGAGAGAATCTTGGCTCTGCGATGTTTTACTCTC
TTATTTCCTTAGGTCCATTGTGCtagatatttatatttttatttgtccCT
CATTTTAGaactattttttttccaaattttttctggTCCTTAAATTTCTT
ATATCCTCAATTTTGTAAATAACCCTAAAATTCATATAACAAACTACTTT
AACTAAATAGAGATTTAAAAATATGACCTGATAAACTGTCGCAAGTATAT
CTTTCAGCTTTTAAAGGGATAACTAG
Run BLAST on NCBI

transcript from alignment at sc0000024:764743..776661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002970 ID=TCONS_00002970|Name=TCONS_00002970|organism=Clytia hemisphaerica|type=transcript|length=11919bp|location=Sequence derived from alignment at sc0000024:764743..776661+ (Clytia hemisphaerica)
GTCATACCTTAGCTCATTGACTTTGGAGAGGTCTGATACacttttttgca
ttttaaaTGCTAGTATCATATCATTTTGATTAGGTTCTTGACCCATCGAA
GAAATCCAATATGGCGGCCATTTTAACCAGGTAAGTTTTCTCTTTCAGAT
TCAGTGTCAATTGTAGATGACTTTACTGCGGGCAGGCGGGGAAAGCTTAA
TGGGCCatcccagaaaatttttgttaccccccgtcggacgacgtgcattt
tttaatttttcatagcctcggaaataatttttcttttccagtggtggtcg
ggaaattccgatgaaaatccatgtacttttgcaaaatgcatcggaaattc
cactcttttttgccttttttaattcaattgccttggaaatttgtacattt
tcttctctcaccttggaaacttcgaattttggtgaaaactttggACCTCT
GAAATcttgtgtcgtccgcccccgccctcccccctgttacagacaaattc
tggaatggcccaatactgtctcacttttttatcattcttgGAAAAGGTTG
TGAAAATGTTCTAATCCACCGTTAGTATCGTAAgctggtctaatgtcaac
atccccctcttctaatttcgacacccttcatTAGTTTAGGGGCAACGTCC
ATATTCAAAGTAGGGAGGTCGGGCCTTACGCgtgcggcagtaacaaaaca
tagattttcgagaaaaaaatattNTCTCAAGGAAGGAAACCTCTTTTAac
ataagtattttttccaaagtgtagagaatttattcagctttcttttgcag
aaaaaatcagcacatAATGNcattttccttcaaaatttgaaaatgagtac
tcgcgggtgagttttttcaaacttcttgttcgcggcacggcaaaattttt
tatccgggggttctaaaatccaaagGGCTAGCCACCCAAAACAGCTATCG
ACCTGGAATTTTTGCATCGTTCCCCGCaatagtttagcttttgagacgta
ccacgttcGTGGTACGTTTTTTTATCGAACGtgaatttttttagaaagaa
caatgtttattctttccaaatgtgaaaaaagtaagaatcaagctgtttcc
ggtggcaagcgcaagggaaagattatggtgtaattacccccgtttcagct
acatctatggaaaataaaactcgcaccAAACCTCTCGCgcggaatttttc
ataaaacactttcgcttttggtgccataatgaaggtacaaaatggctggt
gatgcgtgcacgaaaatgcttgaaaaattgaacttcaaaatgtaatatct
ttggaactttagagaattggaaggtaaatgacccctcatttttcttctga
tggttatggctttccattaaacttggtttggtattctgcaagtaagtttg
aaatttcctctgaccaccctattcaaagtcgccacgcgtaacgggaaaag
accgttactTTCAAAACATACCTACCCACCTCCTTAACCAGCCTTAAAAC
GGTCTTCATAAATAAATTGACCAAAATCTTACCGAAGCTTCCATTcccgc
caaaatcaaaacaaacggcccgctaTAAATGTCACCATTTTCGGAGGTTT
AAAACAGCCAAACTCcatcacaatttttaaacagTCTTTATTTTTAAACT
CCCGACAGCTCCCGAGGCAGAAATGTTATACTCTGAAGAAGCAACCCCTA
AAATTGCtcagggaaaggattttggcTGGATAGCGTgctaaaagaaaaag
taaaggaGTGAGTGCTAGTACGGTAAAGGgtcttagatttttttctttga
atttttaatGGAATTTCATTTTGGTTATCAATGCCATGCAGCTAACTCTC
AACATTCCGATATACCTACccactaacggtcttttcccgttacacGTGCC
GAttttgaatatggacgtcgcccATTAGAGATGAGAATAATGGGAAGGTc
cgaatcgctgattgaaactaattttctttgctaAGCGTTCagagagaaaa
atatcttttgtctatcagtgattccaaccttttcatcctattattcctat
ctctaaagaagggtgtcgaaattagaggagggatgctGACATTGAGACCA
TCTTAcggtataagattcccatttccgcaccaAGATTCTTCTTGTCACTT
TCCTGAAACCTTTTTGCTAGATATTTTTCTCGGGATAACCGGCATAAGAT
TGaaaagggtttgtttctaaaggtacgAAAAATCTTGTTTATATACTCAC
AAAACTGTGTGACTTTTGGAAGCTTATCTTTCAACTATCCCcaagtcctg
gtctttttggacctacctccgggtaccgcATTGGAgctcctataaattaa
cctttgtccgttcgtccgtctgtttgttaccagcttttctcgagattggc
tcgttagttttttcggatttttggctcaaagatgcaaaatgacaatactt
aaaatgtgacggagcccgatttttgaaagacatttttttctggccaaaaa
tgccggaaatatgccggaaaaaccaatttttgacattttctcgaatgttc
atccttagttttttctgattttttgcagtaagatgcgtattcgcaatgtt
caaaacatgggcaagtttgattttttgagaaaaatttttttccaaccaaa
aatgacagaaattgccgtttttgcagattttcattggattttttcgtttt
atgtctttgtttttttcaactaATAACGGCActatcatcattgacaataa
aaaaaggattttctgtctAAGTCCACCATTTTAGCACAgtctgaggattg
agccgagaacgctctcAGAACGCCTGCAAGCTCCCGCATGGGTGAAAAAC
TATctctcaatcattttctcaagcaaagagtGTGCGAAGCGATTcgagct
ttacgatagtgccacggatcatcagtggatagcaTTCatttatcattatc
cctttattttcattcctagaacatttgcaaaaaaaaggaaaaatagaaaa
gttattttttactgctctattacTATTGCATAAAAATTGACTGCCCGGTT
CCAGATAgtgaaaagggggggggggggagaaaaatttcaacatttctggg
aagggaaaacacaaaaggGCTGAGAAaaggatatttttattttcagaggg
GGGGGGAGATTTGTGGAAAAAgggttttttcattttcagggggGATTTGA
CAACTGGGCAGTCTAAAAATCATTGGAGGAACTGACCCAGGAGAAAACTA
TGCTATGATTTTCCTCCTCCTTTTTGCCAAGAAAGTAAATTGAATATCTC
AACAGTGAAAATTCCATGCTCTTTTATATCTTTTAACAGTGAACTATGAA
TCTAATGTAAAAGCTAAATGtcaagaaatattatttttggtgtaattaat
tctttaaaaaatttgaaaaaaacttctgtCTTATGAggctcttcaaaatt
tttgacttttcaaccAGAACTTGATAGTTAAGGGAAACAGACACTGACTG
AAGTActtggaattttgcctgatCATATCTGCTCATATACCTGAGGTTCC
ATGGCTTCCGAAATCTTTTAAGAATTCTAGCGAATTGATGGTTTATATCA
GCCTTTTTGAAAGCTGATTTTGAATGAccaaaattagagaaaaattgaat
ttgttcCTATTAATTGAAAACTTGTTTTTCAGTTTTAGATATTCCTCACA
ATGGATTTGGATCCCCACGTCCATCACACGACAGTCAAACTGGAAGAGAT
GCCTCATGCAGTTCCTGTCCATCAAGTTACAAGGTCCAATTCTCTCTCCA
TGACCCACGTTGGATCAATGTCTGACGGCCTATCTGATGACCCCTCTTCG
CCTGAATCAACAGCTTTTGATGATACTGATCTTCTTACTGCACCAAGTAT
GTTTTACTAATTTCATCTTTATTGTGGTCATTCATATAGTatttggacaa
aaaaatttttccaaacatttGACAGCCCCCTTCCTCTTTGTACacaaaga
acaatagaaatttctttcaaaaaatatctgTACGCTATACGTCATTGAAA
AAAAccctctcccccttcactgtgtacTACATGGAAAGCCCCAATTCTGA
AAGTGTTTTAAAACTTGTAATTTAATAGGTTTTAAAAAACATATTTGGAT
AGTTTCAATCAGTTGCAATAGTTACAATAGGTGCCAATACTGCAATCCCA
ACTTTTTTGTGGTTACAGTTGACTATTGCTGTTTAAATAAGGGCCCAATG
TTTAAATTCAGCTCACTCTACACCCAAGGGACCTAAATTCTTTGTCAAAG
GTTTGAGACCTGAACTTCACTCTTCACCATGCCTCAGTGTCACAACTAGT
TAATGTTAGAATaaatcatttaattttttcaaactctCAGGTGTTGGTAT
GCACGATGATGTCACAGATGAAGTCACCGCTCAATTAGCCGCTGCTGGAC
CCATCGGTAGGTCTGCTTTTAAGCTTGgtcttttgaaatcaaaagaagca
aatCTGATCTGTGGATACATATGTGATCAGCCAAAGCATTGAAAATAGTG
CAGTGAATATCAGtaaaaatcaatattattaTGATACTATCAGCAAATAG
AATGATTTACTAGAAATTGCAGTAAGgcttaaaaaaagttattggaaAAA
TTGCTAACTTCAAAacattagaactgaaaaaagtaattttctgGAAAACA
TGTTGCAATGATAATACTAAagtttctttgaaaagaaatcAAATAGAATG
AGAAGAAAATaaccaattttacaattttactcctagaaagttgtttttaa
agtGCCATTAACGTTTAAAGCTATTCCAGGAAAACTTTATATTAGTTTAT
GTCCAATCGAATCGGCTCTATTTACGTGTCATCAAGTGCACCAAATGGCA
GCATAGCCCAAGGGTCTGGTTCTTTTTTATTATACTTATACTGCCTTATA
CTTATATTTGCAAGAGTGCCAGATAACACCTACACGCAGCTTCTCAGAAC
ATTTTGAAGTGACGCAGTTTATCATTactaaaaatggacaaaaagaacga
caaattcaTTGGGAGTCATGCAGTTGGTACCCGACATCATGACGACTAac
tgcaaaattgaaaatttgagattACACCCACCACCCCTTAGCAGTTAGTA
CCCAAATGTACTACGTGCCTTTGACTATTGACAGGTTGACACCACCCCTA
TTTGCACTTGGTACAGCTTGGTACCTTGCAGTACTAAGTGCATTTGACTA
TTGAcagtttggcaccaccccctaTTCTATAACATAAACACAAAGCCCAA
CATATACGATACAAAGCTACAAAGCGCCAACATTTAAAGTAAAGTCTGCC
CAACATAATAGGTCTAAAGccccagaaataaaaaatatgaattaAGCATT
GTTTGACCAACGACTGGGAGAAAAGCTtgagaagacattgcagtgctGCG
CAActtcataaaaacaaaaagctgGCAATTTAGCTATACACAATTTCAAA
ACATGCAATCTTTGAAATGCTGATTTTGTAAATCTGGAGAGTAAAACCAA
GAAAGCTCCTACATTTTTTTGTATCTACCGTGAAAATTAGTTACGCAAAA
ATAGGTAATTTTTActataaattcttgaaaactCCTAGGAAAGTGAAAGA
AGTTGGTGTCAACCGCGAAGATTAGTTTTGCAAAAAACGCCAACTTCATA
CCTTCACACactgtgaaaattagttccctagGTATTAATATCGATAGCCT
TTTTAACAATTAGTACACTGAAAGTACCATttgattgacttgaaatttat
aGCACGCTACCCCTAATAGCACTTACTACCCACAAGGTACTAACTGCAAA
AATCAAATAtgacccaccacggtactaaccgtcATGATGTCTGGTaccaa
ctgcatgacccccccttccccttgacaaatttcatattttaggTTAAGAG
TTTTGCCAGTAACGTCAATCTTTTAATCATAAAAACTTTCCACAAGCCTT
ATTCGCGGGCCCTTCTCAAAATCGTATTTGTTTTCGAACCATTCTCGTCC
CACGAAAGATGCTATGGATCCTAAGGGTTGGCTCCTACTATAATAAAACG
TTCATGAAATTTGGCCTTCATCATTAAAATTCACATATTTCACTCCTTCC
AGGAATGGCTGCTGCAGCCGCCATCATCACAGGCAAGAGACGAAAGAaga
gctaccattttgaaacaAACCCCTCCATCAGAAAACGCCAAGCAACTCGA
CTTTTACGGAAATTGAAACAACTCTTAACGGAATACACGACGAGAGTAGG
CCAACAAGCTTGTATCGTCGTCTGTTGTCCAGGTACGTGTTTTTTAAGAA
TCATTTCGTTATCTCTAAATCGCGTCATTTTGAAAAGCATTTTGTGAGGG
AATATTTTGCAGGCCTGAGTTCAAAACCTACTTTTTAAATTAATCAACAT
CATATTTTGAGTAATAGAAGGGAATGATATTGAAATTATAACGACAAAGA
CTGGAACTTTTAGTTTTCCTTCTCAGAAAAGCGACTATCTAAATGTAAAA
ACCAGATTATTCCTCCTGATTCTGACTTTTTCAAACTCTATTCTCATCCA
GGGAAACTGGGTGCATCTTTCAAATGTTTTGGAGCAGCACCACTGGAAAA
CATCGTCAAAAACCGTAAGAACATCATCATGGAGGATTTGGAGAATGCGC
TCGNCTGGGTGCATCTTTCAAATGTTTTGGAGCAGCACCACTGGAAAACA
TCGTCAAAAACCGTAAGAACATCATCATGGAGGATTTGGAGAACGCGCTC
GCTCAACAAGCTCCCTCAATACCTGACACCAACCCTGATCTTCACGAACT
TCCGCCGCTGGTAAGACTGTTGTCCTCTCTCACGTGTTGTCTTATTTGTC
AATGTATAAGAGagatttccagaaaaaacttagtataatgatgaaaagaa
aaatgatgatACTGTAAAGCAATGCTGTTAGTCATTTCTCTACTAAGCTC
TTAATAGCTACAGTCAACTCactgtaattcgaactagagTAGTTGCTATA
CTAAAAAAAATCCctttaaaaaatgatgtttcCACTTTTCAACACAGGTG
ATTGAAGGAATCCCAACCCCGGTGGACAAGATGACACAGGCCCAACTTCG
CGCCTTCATTCCCATCATGTTGAAATATTCTACTGGGCGTGGGAAGCCAG
GGTGGGGGCGTGACAACACTAAACCACCCTGGTGGCCAGAAGAAGTTCCT
TGGGCGAACGTGCGAAGTGATGTAAGAAACGAGATGGATAAACAAAAGAT
CTCCTGGACAAACGCACTAAGGTTTGGAATTCAAAACTATCGTATTCTGA
AGTAGTCCTATATTTTCGGATCCAAGTCATCCGAACATTTTGGTTTCGAA
AGGGCAAAAACATAATAAGAGTATAAATTCCAGTAAGTgcaaattaaaaa
cttttatagATCTAAAGCAGAATTTTTGCATTCTTTTATGTTTATGTCCT
TGATATGTTTTTATTTACTGTATGTATGCGGTCAAGAATTTTTATCAGCT
CTGATCAGCTACTCTAGTAGAAAACCAACTGTGCATTACTCTTCaacttt
attttttgtaaaaagtactCTGCAGAAACAAACAATGTTAAAAACATATT
CCGTTAGAGGCTTCGCCATCTccaaattctgcataattccaCAAAACTTC
AAGAATATTttgtaggcttctgctcatcctctagcgaaaaaagtttctta
tagaggctgcTTAATACTCGGTAGATCTTTTTTCCCAGAATATGCCGCTT
TTCGCCGAATTTCGGCGAACAACCtattttagctggcgagtgctTTTGAT
GATTAATTTGCAAAGAGTACCTTTGCAAGAGTACCTGTTACGAAGTAGCG
TAGCTTTCGCTgttcaaattcaagatggccgTCGAAGCGGGAAGTGGTTT
TCGTCAAGCTAGAGTACTCGTTTTTGATTTGGGGTAGTTTGTTTAAGGCG
AAAGAAGTTTTGTTAATACAATTACAAGTTTTAGAGTATGTAATATATGT
ACCAAGAAAAAAAATATCGTCTAGAACATTTGTTATCAAGCTTATAATGt
ggaattttgatttgttttggtggACATTTTGTTCGTTTTGAACGAATGTA
GAAAAGATACAGTAACAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTAAGTATCTAATAGT
AATATTATTTTGTGGCTTTATCTCTTTCCAGAGAGCCTTCTTCCCTTTTA
CTTTGTGTCTACTTAAAGTTGTTTGAAAAAGTGTAGCAGCAGATTCTAtt
attctttgttttgttaAACTTTGGCAGAGACGGGAAGAATGTtggaatca
gttttattgatgaAACCCAATATGTCTCACTTAACTAACCTGAAGAGGTT
CTTTGGAAACAAATAGTTATtgtgaaattttctttcaaagtttttgagaa
attcaaattcgTTGACTCAAAGCtctaatatcaaaacattccaaaataaa
aaaacattcgaaaatagaaaaaaatcattcgaaaataaaagaaacattcg
aaaaggcGTGCCTATGGCAAAATGGAATCCCGTCTAACACTGGAATGCCt
tcactttgatttcttttgtttatcttttaacTCGCATTCGAGTTCCCATA
AAACTTAGCGACTCGCCAAATAGCACGAGTCGGCCACCATGAGAGCCACC
GTAGCGGGAAACCAATCCATACACTATTAAACAGACCtataggaagtata
ggtctgcgaatcagactaaaATATTTGCTGATTTGCTTTGTAAAACTCAT
TTCCTTCTCTTGATCTTGCCTTCACCACTAAAACTTTACTTTAATTAAAT
TGATTTACGGTAAATGaaagtaaattcaaaataaatgatTGTACGCAAGT
GCATCCTTTTAATGTTTTAAcatcttgattttttgaaaaaatacgtATTT
AGNTCACCACTAAAACTTTACTTTAATTAAATTGATTTACGGTAAATGaa
agtaaattcaaaataaatgatTGTACGCAAGTGCATCCTTTTAATGTTTT
AACatcttgatattttgaaaaaatacgtATTTAGAttcaaagtaatttat
tttCAGGAAAGTGGTACGGAATTGTTATCGTTATCACGGCCGCGAAGAAC
TTTTGGACGCGTTCGCTTCAGCCGACAACCAAATGGAACAACACAACACT
CAACAAACTCAAGTCTTCACGTCCCAATACCCTCATCTTGTTCATACAAT
CAACAACGCGGACGGAACTGTCTCCATCATCCAAGTGGATGCAACAGGTG
CTGTGACCACACTGTCTGAATCAGCGAGTCAATCGGAAGCAACACAGGCT
GTGGCGACGCTGGCTGAGGTAGCTGCTTCACAAGGTatgaatttttatca
tttttagggTCCTGGACTGTCCTGGAGCTGGTTAGTCTGTACACAGATCC
AACATCTACGGCTAAATTCAAAATCCATTGCTGTAGATGATCTGTTGTCA
CtgtcttttctgatttgagatttttcaaaccgaccgctgcgatggagagG
AGAGACGACGCGAAAAAATTgtttctatttataaatcatacttcatcgca
aaGATTTTCGTACGGGAATTTTGTTAACAAACAGACAGTGCCCACATAGT
GTACTACGAAGCCATAAATGTAAGATACACTTTGGTAAGAGAAGGAGTTG
GTCCACTACCAGTATCTTCGATTTATATATTAATACTCATGATGGGAGAC
CACATTCTTTGTTATGCTTCATCGATGAATTTATAAGAAATCTAGACATA
ATATACAGTTAAAGCTGTAAAGTATATCTTTCTCTAAATGTTGTATATTA
CCTTTCTCAACACAGGTGAAGTGATATACGGTAGTCATTCGATGGACCAC
CATTCCACGTTAACGCACGACCACGGAGGTGTTGTGACGTCAATCAGTGA
AAGCGCTCTCCATGATGGTCAACTTCTGCTCGGCGATGCGGTGAGTTGAG
TCTTAATCTCTCGTAATCACATGTTTCTcgttgtttttctttatttttaa
ttttccatgAATGGTACATTTCAAGTGCGATTGGTTTTTTATTTCCTAAA
TTTTGACTATATTGCGATATGTGGTGTGACTCTAAACTCGAATTTTCACG
AAGAATTGGACATTTCGTTTTTGAATCTGCTCATCTTGCATTACCTGTTT
TTGCTACCTTTCGGCAAGAACTTTCAAGCATTATTCTTGCCCTCTTCTTC
CTCAGGTATCAGCTGCGGCTGCATTGGTAGGTGTCCAAGACCAAAACACA
GCTGTTGTTTCCATTCCGGTGCACGCTGCGGCTGCCATGATGCAAATTCA
AGGTTTGTTTGCTCATTGATCACATTTTTTCGATCCACTGCAACTATTTC
ATGACATCTTGGACTTTTCCAGCACTTCTATTATACTCTTatgttccaaa
taaacgccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCctccgt
ttatttggaacctaagagcaTGTTTGTGTTAATTTTCTTTGGCTATGTAG
ACTTCAGTATACTTTCGcttattcgaatttttttccAGCCCCTGTCAAGG
AGAAACAACCCTCTTAATAcattttctataattcaaatctctTTGTAATT
TGAACAAATAAGATTGCCTGTTCGAGATCGAATGAGCAACAGTCAAATGC
TGACACTTATCCTTATGCTCATATTTCTGGACTTGTAACTAACTAAACAT
CTCTCTTTTAATTTCCAGGAACAAATTTGATACCTGTTTCCATAGCGAAT
GGTGGCGGGGGCGTTCAATTCATCGCCACATCTTCTCTATCTAATTTCCA
ACTTCAAGCCGCCAACGAACAACAAACTAACGCCCAACAAACCGTCACAC
AAAACCGCCAGCCGCCCTCACTTTCTGCACAACCATCGGAAGATAATTTA
GCGTCTATGGATGTTCCAATGACTGATCCCTCGCCACCCGTTTCACCCTC
TCCGCCCCTGGTACAAGAACAACATTCGGCCAACGAACTCGGAGTTCATC
AACATTCAACCAATGAGATGACAGTACATCAAAATTCGACCAACGAAATG
GTAGTCCATCAAAATTCGACCAATGAAATGACAATACATCAACAGCAACC
ACCCAATGAGATTTCAGTTCCCATGGCTACACAGGCGGTTGAGGTAGCAA
CCATGCATGATCAACAAACGAACTCTGTGACAGGCACTTGATGAAGTTTG
TGGCACGATTCTACGTTTCTGTTTTCCTTCTATCTTTCGGGTTCCCCAGT
CCAATCCAGTCCaatcctttttcaaaaaactgacaGTTGGACAATTGAAT
CTTGTTTTGATCAAAGTCAAACTTTTCAACTCTCCATTTCTTAGAAGTCG
ATTGTGCTTGACAAAGTGTATAGTTTTACTTTAGTTCCAATACTTCTAAA
GAAACATTTTGAGAGAATCTTGGCTCTGCGATGTTTTACTCTCTTATTTC
CTTAGGTCCATTGTGCtagatatttatatttttatttgtccCTCATTTTA
GaactattttttttccaaattttttctggTCCTTAAATTTCTTATATCCT
CAATTTTGTAAATAACCCTAAAATTCATATAACAAACTACTTTAACTAAA
TAGAGATTTAAAAATATGACCTGATAAACTGTCGCAAGTATATCTTTCAG
CTTTTAAAGGGATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001631XLOC_001631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002970-exon-sc0000024-1491911889:764743..764872TCONS_00002970-exon-sc0000024-1491911889:764743..764872Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:764743..764872TCONS_00002970-exon-sc0000024-1510915933:764743..764872Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:764743..764872TCONS_00002970-exon-sc0000024-1575043694:764743..764872Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:768425..768638TCONS_00002970-exon-sc0000024-1491911889:768425..768638Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:768425..768638TCONS_00002970-exon-sc0000024-1510915933:768425..768638Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:768425..768638TCONS_00002970-exon-sc0000024-1575043694:768425..768638Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:769133..769198TCONS_00002970-exon-sc0000024-1491911889:769133..769198Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:769133..769198TCONS_00002970-exon-sc0000024-1510915933:769133..769198Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:769133..769198TCONS_00002970-exon-sc0000024-1575043694:769133..769198Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:770895..771074TCONS_00002970-exon-sc0000024-1491911889:770895..771074Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:770895..771074TCONS_00002970-exon-sc0000024-1510915933:770895..771074Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:770895..771074TCONS_00002970-exon-sc0000024-1575043694:770895..771074Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:771344..771414TCONS_00002970-exon-sc0000024-1491911889:771344..771414Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:771344..771414TCONS_00002970-exon-sc0000024-1510915933:771344..771414Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:771344..771414TCONS_00002970-exon-sc0000024-1575043694:771344..771414Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:771513..771602TCONS_00002970-exon-sc0000024-1491911889:771513..771602Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:771513..771602TCONS_00002970-exon-sc0000024-1510915933:771513..771602Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:771513..771602TCONS_00002970-exon-sc0000024-1575043694:771513..771602Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:771840..772063TCONS_00002970-exon-sc0000024-1491911889:771840..772063Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:771840..772063TCONS_00002970-exon-sc0000024-1510915933:771840..772063Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:771840..772063TCONS_00002970-exon-sc0000024-1575043694:771840..772063Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:773999..774276TCONS_00002970-exon-sc0000024-1491911889:773999..774276Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:773999..774276TCONS_00002970-exon-sc0000024-1510915933:773999..774276Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:773999..774276TCONS_00002970-exon-sc0000024-1575043694:773999..774276Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:774758..774882TCONS_00002970-exon-sc0000024-1491911889:774758..774882Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:774758..774882TCONS_00002970-exon-sc0000024-1510915933:774758..774882Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:774758..774882TCONS_00002970-exon-sc0000024-1575043694:774758..774882Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:775148..775244TCONS_00002970-exon-sc0000024-1491911889:775148..775244Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:775148..775244TCONS_00002970-exon-sc0000024-1510915933:775148..775244Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:775148..775244TCONS_00002970-exon-sc0000024-1575043694:775148..775244Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1491911889:775711..776661TCONS_00002970-exon-sc0000024-1491911889:775711..776661Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1510915933:775711..776661TCONS_00002970-exon-sc0000024-1510915933:775711..776661Clytia hemisphaericaexon
TCONS_00002970-exon-sc0000024-1575043694:775711..776661TCONS_00002970-exon-sc0000024-1575043694:775711..776661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:764743..776661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16152	2.94181	6.78347	2.81514	56.0362	23.455	19.6126	30.4688	13.1677	16.9233	14.4499	14.1516	7.60657	12.0444	10.8297	14.6545	0.0306301	3.15934	6.32535	7.31647	11.2911	0.473061	19.6323	6.55027	20.5375	18.9138	0.955863	10.1186	3.3487	14.8431
Blast
[Close]
BLAST of TCONS_00002970 vs. Swiss-Prot (Human)
Match: NRF1 (Nuclear respiratory factor 1 OS=Homo sapiens GN=NRF1 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.475e-90
Identity = 221/463 (47.73%), Postives = 279/463 (60.26%), Query Frame = 2 
Query:  263 SMSDGLSDDPSSPESTAFDDTDLLTAPSVGMHDDVTDEVTXXXXXXXXXXXXXXXXXXXXKRRKKSYHFETNPSIXXXXXXXXXXXXXXXXXEYTTRVGQQACIVVCCPGKLGASFKCFGAAPLENIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPPLVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEEVPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADNQMEQHNTQQ-TQVFTSQYPHLVHTINNADGTVSIIQVDATGAVXXXXXXXXXXXXXXXXXXLAEVAASQGEV-----IYGSHSMDHHSTLTHD--------------------HGGVVT-------------SISESALH-DGQLLL-GDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVSIANGGGGVQF 1528
            SM     D PSSPE T++DD+D+L + +        DEVTA LAAAGP+GMAAAAA+ TGK+RK+ + FE+NPSIRKRQ TRLLRKL+  L EYTTRVGQQA ++   P K    FK FGAAPLEN+V+  K++I+EDLE+ALA+ AP+  + N    ELPPL I+GIP  VDKMTQAQLRAFIP MLKYSTGRGKPGWG+++ KP WWPE++PWANVRSDVR E  KQ++SWT ALR +V+NCY+ HGRE+LL AF     Q +   T     +  SQ   +V T +N DGTVS+IQV  TGA       AS+   T  VA +   A + GEV           M   +T   +                     G  VT             +++E+ L   GQ++L G+  +A  AL GVQD N  +V IPV    +M Q      +  S+A G G VQ 
Sbjct:   36 SMLSADEDSPSSPEDTSYDDSDILNSTAA-------DEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVN---SELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQT--VVQTFSNPDGTVSLIQV-GTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDAN-GLVQIPV----SMYQT-----VVTSLAQGNGPVQV 475
The following BLAST results are available for this feature:
BLAST of TCONS_00002970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRF17.475e-9047.73Nuclear respiratory factor 1 OS=Homo sapiens GN=NR... [more]
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