TCONS_00003044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003044
Unique NameTCONS_00003044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003044 ID=TCONS_00003044|Name=TCONS_00003044|organism=Clytia hemisphaerica|type=transcript|length=1662bp
ATTTAGGAATGGCTGACTGGCGCTGTTTTGCAAGTTATTTTAAGTTTGGT
TTTAACCGAAGAAAACTCTTTAAACGTGCACAAGCAGTACCCAATGAGTA
TAGCCCGACAATGAAATTATTAGAAACAATAACTCAGGAGAACCCAAGTT
TAACAGtagatgttcttatacagtGGGCAAGGGAGGAACTAAGAATTGAC
ATTGTCAATCTTCTtgaagattttgtaaaagattccGAGCAAGAGATAGT
GTTCATCGTTCAAGAACAACATGAACACATAATCGAAGAGGAAAGAATGA
TGATTATGAATGCTCAGGTTCTAAATTGTGAAGGAAATGTGGAACTCGAA
TTGGAAGTGGAAGCGGGAGTACCTGATCTCCGATGAGTAGAGAGGATTGA
TCGCACTATGATCAGAAAACTTTTGATAGGGTTATTATTCGTGAGATATA
TTAATATcacctacacgctttttttataacaatgttgtaaatatatttca
tcatagatattcttttaattttttgggaaaatcatcctaatatattctta
cagcattcctaggttaggatcctaattcagactagatttaacattcaGCA
cgtacgtctcaagcataaaatggcatttttgttaaaggagtgagccttac
ttgtgGGGTAATTGatgatttataattgaaaatgctctaaaaaggcattc
ttagcttgagtagccaaattccatgatggtaatattcttagcattattat
tcttagttttttggcccttttcatcatggatattcttattataaagtgta
ttcttataaaaaaatgcgtGTATTCGCGAATGTTTGTCACTTTCACGATA
ACAAATCTCGCTAAAGTACGCGAGGTAGCTAGGGTTTATGCAGTATGCAA
TACTGATGAGTcccaaccactgacctttatataaccctggaccaagcaat
atctgccatcttcgATTGGagattttttggaattggtacccgagaagaag
ccattgcagtgttaaaaattaacgtctaacgccgctacatcatcaaaaga
atttgaggaaaagtagacctagcgctctcgatgcatttacaccgctatcg
agtagtgctaccattagggtacaaattttcaaaaaactctgatcaaagat
tttgcttgtttgggattgagaaacttggtccagggtatataaaggtcagt
ggtcccATCATTGTACAGCATTTTAGTAAAACGAGAGGTCGACCAttgta
aataatttatttttgaattctcTGTATATCGGCAGGAGTCTTTGAAATTT
CAAGCATCCCTCAAGCAGTAATTCGAGATTTGTATATACTGGAGGTCTCT
TTAAAGGATAAACTATACTTTTAAGATTGGGATACTTGAAAACATACTCA
AATCTATTATCAGCCTgtagatccatgctatgatttcttatttatatata
ctgatggcgaaatgaataCATCATATTTAAAATACGAAGATGGGTTCTCC
TGCCTAATCTAATTAGATATGTCATTAATTAGATTAATTAGATAGACTGT
CGATAACTATAACGCTTAATTCAATATCACAATAGATATTTTGTATATAT
gtacattattttttttattggtaaAAAATTACAGGCGAAAAAGATAAAAA
GCTGCAATCGTC
Run BLAST on NCBI

protein sequence of TCONS_00003044-protein

>TCONS_00003044-protein ID=TCONS_00003044-protein|Name=TCONS_00003044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
LGMADWRCFASYFKFGFNRRKLFKRAQAVPNEYSPTMKLLETITQENPSL
TVDVLIQWAREELRIDIVNLLEDFVKDSEQEIVFIVQEQHEHIIEEERMM
IMNAQVLNCEGNVELELEVEAGVPDLR
Run BLAST on NCBI

transcript from alignment at sc0000024:426302..427963

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003044 ID=TCONS_00003044|Name=TCONS_00003044|organism=Clytia hemisphaerica|type=transcript|length=1662bp|location=Sequence derived from alignment at sc0000024:426302..427963 (Clytia hemisphaerica)
GACGATTGCAGCTTTTTATCTTTTTCGCCTGTAATTTTttaccaataaaa
aaaataatgtacATATATACAAAATATCTATTGTGATATTGAATTAAGCG
TTATAGTTATCGACAGTCTATCTAATTAATCTAATTAATGACATATCTAA
TTAGATTAGGCAGGAGAACCCATCTTCGTATTTTAAATATGATGtattca
tttcgccatcagtatatataaataagaaatcatagcatggatctacAGGC
TGATAATAGATTTGAGTATGTTTTCAAGTATCCCAATCTTAAAAGTATAG
TTTATCCTTTAAAGAGACCTCCAGTATATACAAATCTCGAATTACTGCTT
GAGGGATGCTTGAAATTTCAAAGACTCCTGCCGATATACAgagaattcaa
aaataaattatttacaaTGGTCGACCTCTCGTTTTACTAAAATGCTGTAC
AATGATgggaccactgacctttatataccctggaccaagtttctcaatcc
caaacaagcaaaatctttgatcagagttttttgaaaatttgtaccctaat
ggtagcactactcgatagcggtgtaaatgcatcgagagcgctaggtctac
ttttcctcaaattcttttgatgatgtagcggcgttagacgttaattttta
acactgcaatggcttcttctcgggtaccaattccaaaaaatctCCAATcg
aagatggcagatattgcttggtccagggttatataaaggtcagtggttgg
gACTCATCAGTATTGCATACTGCATAAACCCTAGCTACCTCGCGTACTTT
AGCGAGATTTGTTATCGTGAAAGTGACAAACATTCGCGAATACacgcatt
tttttataagaatacactttataataagaatatccatgatgaaaagggcc
aaaaaactaagaataataatgctaagaatattaccatcatggaatttggc
tactcaagctaagaatgcctttttagagcattttcaattataaatcatCA
ATTACCCcacaagtaaggctcactcctttaacaaaaatgccattttatgc
ttgagacgtacgTGCtgaatgttaaatctagtctgaattaggatcctaac
ctaggaatgctgtaagaatatattaggatgattttcccaaaaaattaaaa
gaatatctatgatgaaatatatttacaacattgttataaaaaaagcgtgt
aggtgATATTAATATATCTCACGAATAATAACCCTATCAAAAGTTTTCTG
ATCATAGTGCGATCAATCCTCTCTACTCATCGGAGATCAGGTACTCCCGC
TTCCACTTCCAATTCGAGTTCCACATTTCCTTCACAATTTAGAACCTGAG
CATTCATAATCATCATTCTTTCCTCTTCGATTATGTGTTCATGTTGTTCT
TGAACGATGAACACTATCTCTTGCTCggaatcttttacaaaatcttcaAG
AAGATTGACAATGTCAATTCTTAGTTCCTCCCTTGCCCactgtataagaa
catctaCTGTTAAACTTGGGTTCTCCTGAGTTATTGTTTCTAATAATTTC
ATTGTCGGGCTATACTCATTGGGTACTGCTTGTGCACGTTTAAAGAGTTT
TCTTCGGTTAAAACCAAACTTAAAATAACTTGCAAAACAGCGCCAGTCAG
CCATTCCTAAAT

Coding sequence (CDS) from alignment at sc0000024:426302..427963

>TCONS_00003044 ID=TCONS_00003044|Name=TCONS_00003044|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000024:426302..427963 (Clytia hemisphaerica)
TCATCGGAGATCAGGTACTCCCGCTTCCACTTCCAATTCGAGTTCCACAT
TTCCTTCACAATTTAGAACCTGAGCATTCATAATCATCATTCTTTCCTCT
TCGATTATGTGTTCATGTTGTTCTTGAACGATGAACACTATCTCTTGCTC
ggaatcttttacaaaatcttcaAGAAGATTGACAATGTCAATTCTTAGTT
CCTCCCTTGCCCactgtataagaacatctaCTGTTAAACTTGGGTTCTCC
TGAGTTATTGTTTCTAATAATTTCATTGTCGGGCTATACTCATTGGGTAC
TGCTTGTGCACGTTTAAAGAGTTTTCTTCGGTTAAAACCAAACTTAAAAT
AACTTGCAAAACAGCGCCAGTCAGCCATTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001675XLOC_001675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003044-proteinTCONS_00003044-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003044-exon-sc0000024-1491911889:426302..427963TCONS_00003044-exon-sc0000024-1491911889:426302..427963Clytia hemisphaericaexon
TCONS_00003044-exon-sc0000024-1510915933:426302..427963TCONS_00003044-exon-sc0000024-1510915933:426302..427963Clytia hemisphaericaexon
TCONS_00003044-exon-sc0000024-1575043694:426302..427963TCONS_00003044-exon-sc0000024-1575043694:426302..427963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:426302..427963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224016	0.344743	1.0868	1.06964	0.994941	0.635269	0.739532	1.35182	1.68905	4.07389	2.12972	1.68528	3.62215	3.25293	4.00126	4.5962	3.13997	2.54823	6.11558	5.01828	2.24892	2.61228	1.57973	2.75581	5.41282	7.27263	3.54142	3.03263	1.42436	0.876147
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000488Death_domain
IPR011029DEATH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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