TCONS_00002995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002995
Unique NameTCONS_00002995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002995 ID=TCONS_00002995|Name=TCONS_00002995|organism=Clytia hemisphaerica|type=transcript|length=521bp
TAGTGAGAAtgtgaaaatatataaagtttaaaTACAATATAATTTTGTCT
TAAACACCAATCAAAAAAATGACTTCTGCTTTGGAGGATCCAAGCCTTGA
GAGGCATTTCAAAGGACACCGAGATGCTGTCACTTGTCTTGACTTCAACC
CCAACATGAAACAACTTgTGAGTGGGTCCATGGATTCAAGCTTGATGGTG
TTCCATTTCAAGCCACACATGAGAGCGTACAGATTTGTGGGTCATAAGgA
TGCGATCACATCTGTTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTG
GGTCGCGCGACAAAACTGTACGCTTATGGGTACCTAGCGTTAAAGGTGAG
AGCACAGTCTTCAAAGCCCACATGGCAACAGTACGTAGTGTCGATTTTTC
AAGAGATGGACAGAGTTTGTTGACTTCATCTGATGATAAATCATTGAAGC
TGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTTGACCGGTCATATG
AATTGGGTGCGATGTGCAAGG
Run BLAST on NCBI

protein sequence of TCONS_00002995-protein

>TCONS_00002995-protein ID=TCONS_00002995-protein|Name=TCONS_00002995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MTSALEDPSLERHFKGHRDAVTCLDFNPNMKQLVSGSMDSSLMVFHFKPH
MRAYRFVGHKDAITSVSFSPSGHLIASGSRDKTVRLWVPSVKGESTVFKA
HMATVRSVDFSRDGQSLLTSSDDKSLKLWAVHRQKFQFSLTGHMNWVRCA
R
Run BLAST on NCBI

transcript from alignment at sc0000024:292546..296006-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002995 ID=TCONS_00002995|Name=TCONS_00002995|organism=Clytia hemisphaerica|type=transcript|length=3461bp|location=Sequence derived from alignment at sc0000024:292546..296006- (Clytia hemisphaerica)
TAGTGAGAATGTGAAAATATATAAAGTTTAAATACAATATAATTTTGTCT
TAAACACCAATCAAAAAAATGACTTCTGCTTTGGTAAGTTAAAGTTTTTA
AATTTTCTTTCTCACTTGTGACACAAAGAGTAGGAGATAATTCCACTCCT
TTTCCTTTGAGTGAAACCTACCCTTACACCTTATATAATATAATGGGCTT
TTCCAGAAAGAAACCACATACTCCCTGTCCCCTAATGCTGTAACCCCTTG
GAATTTCAGGAACTTTTAAGTTGAAACCTTTTGAAATTCTTAATTTCCGA
AGGTTACCCCATGTTATTTCATTTATTTTTGACAGATTTTTGTATCTCCC
TTTGGAATTCCACCACATATCAAACTTTACCCCTTAGAACGGAAATGGAC
CTCCTCAACAGGGGGTATACGGTTTTTTTCTGATTCTGGAAAAGCTCAAT
TCATGTTATGCTATTAATTACGCAGAAAAACATCAATTAACATTTGTCGA
GGCCTTGCAGGTAAGGAGAACAGACATGATGCTTTAAACCACAACCTTTT
GCATTGTAGCGTAATGTTCTAGCTTTACACTGCGATGAGATTTGCAATTT
GTAAGTTTACAACTGAAAATTAGGTCTTTAGTAACCTAGAGAGAAGATTA
TCACATAATATGAAATAGTGTTGATAATGAATTCCTTTTCCCGTAGGAGG
ATCCAAGCCTTGAGAGGCATTTCAAAGGACACCGAGATGCTGTCACTTGT
CTTGACTTCAACCCCAACATGAAACAACTTGGTATTTTACAACTTTATTT
TTATAAATTACAAAATGATAAGGCAACATCAATTTCCGTAACTGGCGAAC
TGACGACTATATCTAACATTCCCCCCCCCCCAGGAAGAGTTAAGCATTTT
AACATTTCAATTATAATAACAAAACTTGCCAGAGCTGAATTTTATGTGAT
TAATTCTTAAGCCAATTTTTGTGTTTTTTTCTTTTGGTAAAAACATATTC
AAAGCTTGAACAAAAAATTAGGCTTAAAAATGGTGAAAGAGCATTTTGTA
GTGAAACTTGGTAATGATATATAAAACTATAAATGCATCTTATTTAACGT
TGTTCCAAGCAGCTTGAGTTGGACACAAAGTAAACAGAGGAATCATTATC
AACTTTTAACACCCAATACTCTTAAGGTCCCAAATAGTGGGGGATCCAAA
TAAAAGGGGTCCAAAACTTTATCAAAATATGATAAACAGGTGACCTTCTT
TGTCAGGGGTAATTATAGATTAAAACCAGGCTATTTAGAGGAATTCAGCT
TTTGATAGCTGAAATTATCTTCAAAAATAAATAGCCAGGGGAGACTTTTA
TTTGGGACTTTAGAGATGTTATTAAAATGATGTAAAACTTCTTTTCAGTA
TATAATTACTATTAAAGTTTAGGCTTTGAAGCTCATTATTGAACAATGTA
CAATTTTTTTGTCAATCAAATTTCTACTGACAGTATTTCTTTTATAGTGA
GTGGGTCCATGGATTCAAGCTTGATGGTGTTCCATTTCAAGCCACACATG
AGAGCGTACAGATTTGTGGGTCATAAGGTTTGTCACACTATTTTTTTGCT
CTTCTAAAATATTCAAAATTTGAGAGTGTCTTTGCTTTAAACAAGGTTTA
AAATATTTTTATGTTTATTAGTTTTTGAAATGTTAGTTAAATAAGCATGA
CGTAACATTTTAAACAGGGATTTTATTTCTACACTAAAATTTCGGGCCAG
CATAATTTTAATCTTTCTTAAAAATACTAAAATAAAAATACTAGTTATTG
TAAAGGTATTATTTTGAGTCCATGGTTATTGCCCTTTTAGGGACTTTTTT
AATCAAACAACTCAAAAATATGTATTTACTGTTTTAGGGGTATATAATGG
GGATGTAACAGATCCCAGACCAAAATAATTCTTATTTCCATTAAAAGTCT
TTTCAGAACTGTTCAGAATGCTAGCAATGCAAAAATATTTTAGGTTTATG
TCCATTGCCATTTATAAGAGATTTAAAAAATGGGGGTTGGCTTGAAATAC
TGCATATTGGCAGGGATTCCATAGGAGCTCCATAATTTGTTGGATAATAG
ACGGAATATTCTACGTTTTGGCAGAGGGATTATATAGATCCCAGACCCAC
ACGATTTTGATTTTCCTGAAGTATTTTAAAAAAACTTACCATGTAAAAAT
GTCAAGTGTCAGTATTTAAAACTCATTCTTTAAAAGTCTGGTTAATTATG
ACGGCTTGGTTTTTTTCTTCCTAAAATTTTGTACAACAAATGAAAAATCA
TTGATTTCCAATGATTTTAACATATTTACAGGAAAAGACCAAAAGTGCAC
AAATCGCATAGGTTAAATTTTCACAAAAAAACCCAGGAAAAGGCCAAAAG
AACAAAAAAACACTAAATGTTGATTTTCCTGTCCCAAGTAATGGCTGTTG
ACACATACGCATTAGCGCTAGAGAGTTAAAGAGATTCGAATTATTGTTCA
AATCGTGCTAATAAAATAAAATAATAAAATTATGACAAAATTGTTTATTC
TTGCAGGATGCGATCACATCTGTTTCATTTTCACCGTCTGGTCACCTGAT
CGCTTCTGGGTCGCGCGACAAAACTGTACGCTTATGGGTACCTAGCGTGT
AAGTGTATTTTCCTTGAATGAGTCTTTTTTGAAAGGACAGTTTACCAATG
ATAATAAAGTGGAGGCACAAATTTGTTCGAGTTAAGGAATTTTTGAGGTA
GGGAGTAAGGTTTATAAGGCATTGTTAACTTAACGGGTCATGAAACTTGT
TCGAGTTAAGGTGTTGTAGTGGTTTGAATTAACAGAGACTACACTTTAGT
TTGTAGAAATGTTTCCAGCATTTCTATCTTTTTTGACTTCGCATAATTCT
TTCTCATTTACAGTAAAGGTGAGAGCACAGTCTTCAAAGCCCACATGGCA
ACAGTACGTAGTGTCGATTTTTCAAGAGATGGACAGAGTTTGTTGACTTC
ATCTGATGATAAATCATTGAAGGTAAAGAGTTTTCTCTCTCTCATTCAAA
CGTTTTACACTTTCGGTCAGTCACCTTTTTACAAGATGCTCTATCAGATC
GAAGTGGTAGCAGCCATTCTGACATAACTTTACTACAAAAAATGTCCCAA
ACTTCTTTCCAACACAAAAAGAATTTTCGTGGGTTACTGATAAACAAGTT
CTCAACCGAAACTTCCAAAGTTCTCGCATTTATTTTTCGCCTTAATAACT
CATACAATATTATGCAAAAGAACATTCACATTACTGTTAGGTTTTAATTT
GTTCATAAAATTGAATAGTATGGTACTGAATGCTTATATGTTTACAATTA
TGTTGTTTTAATGATGATGAAAATGATAATCACTTTTAGCTGTGGGCAGT
ACATCGACAGAAGTTTCAGTTTTCTTTGACCGGTCATATGAATTGGGTGC
GATGTGCAAGG

Coding sequence (CDS) from alignment at sc0000024:292546..296006-

>TCONS_00002995 ID=TCONS_00002995|Name=TCONS_00002995|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at sc0000024:292546..296006- (Clytia hemisphaerica)
CTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTTGACCGGTCATAT
GAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGCACAGTCTTCAAAGCC
CACATGGCAACAGTACGTAGTGTCGATTTTTCAAGAGATGGACAGAGTTT
GTTGACTTCATCTGATGATAAATCATTGAAGGATGCGATCACATCTGTTT
CATTTTCACCGTCTGGTCACCTGATCGCTTCTGGGTCGCGCGACAAAACT
GTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCATGGATTCAAGCTTGA
TGGTGTTCCATTTCAAGCCACACATGAGAGCGTACAGATTTGTGGGTCAT
AAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGGACACCGAGATGCTGT
CACTTGTCTTGACTTCAACCCCAACATGAAACAACTTGATGACTTCTGCT
TTGCTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTTGACCGGTCA
TATGAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGCACAGTCTTCAAA
GCCCACATGGCAACAGTACGTAGTGTCGATTTTTCAAGAGATGGACAGAG
TTTGTTGACTTCATCTGATGATAAATCATTGAAGGATGCGATCACATCTG
TTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTGGGTCGCGCGACAAA
ACTGTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCATGGATTCAAGCT
TGATGGTGTTCCATTTCAAGCCACACATGAGAGCGTACAGATTTGTGGGT
CATAAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGGACACCGAGATGC
TGTCACTTGTCTTGACTTCAACCCCAACATGAAACAACTTGATGACTTCT
GCTTTGCTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTTGACCGG
TCATATGAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGCACAGTCTTC
AAAGCCCACATGGCAACAGTACGTAGTGTCGATTTTTCAAGAGATGGACA
GAGTTTGTTGACTTCATCTGATGATAAATCATTGAAGGATGCGATCACAT
CTGTTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTGGGTCGCGCGAC
AAAACTGTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCATGGATTCAA
GCTTGATGGTGTTCCATTTCAAGCCACACATGAGAGCGTACAGATTTGTG
GGTCATAAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGGACACCGAGA
TGCTGTCACTTGTCTTGACTTCAACCCCAACATGAAACAACTTGATGACT
TCTGCTTTGCTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTTGAC
CGGTCATATGAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGCACAGTC
TTCAAAGCCCACATGGCAACAGTACGTAGTGTCGATTTTTCAAGAGATGG
ACAGAGTTTGTTGACTTCATCTGATGATAAATCATTGAAGGATGCGATCA
CATCTGTTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTGGGTCGCGC
GACAAAACTGTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCATGGATT
CAAGCTTGATGGTGTTCCATTTCAAGCCACACATGAGAGCGTACAGATTT
GTGGGTCATAAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGGACACCG
AGATGCTGTCACTTGTCTTGACTTCAACCCCAACATGAAACAACTTGATG
ACTTCTGCTTTGCTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTCTTT
GACCGGTCATATGAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGCACA
GTCTTCAAAGCCCACATGGCAACAGTACGTAGTGTCGATTTTTCAAGAGA
TGGACAGAGTTTGTTGACTTCATCTGATGATAAATCATTGAAGGATGCGA
TCACATCTGTTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTGGGTCG
CGCGACAAAACTGTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCATGG
ATTCAAGCTTGATGGTGTTCCATTTCAAGCCACACATGAGAGCGTACAGA
TTTGTGGGTCATAAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGGACA
CCGAGATGCTGTCACTTGTCTTGACTTCAACCCCAACATGAAACAACTTG
ATGACTTCTGCTTTGCTGTGGGCAGTACATCGACAGAAGTTTCAGTTTTC
TTTGACCGGTCATATGAATTGGGTGCGATGTGCAAGGTAAAGGTGAGAGC
ACAGTCTTCAAAGCCCACATGGCAACAGTACGTAGTGTCGATTTTTCAAG
AGATGGACAGAGTTTGTTGACTTCATCTGATGATAAATCATTGAAGGATG
CGATCACATCTGTTTCATTTTCACCGTCTGGTCACCTGATCGCTTCTGGG
TCGCGCGACAAAACTGTACGCTTATGGGTACCTAGCGTTGAGTGGGTCCA
TGGATTCAAGCTTGATGGTGTTCCATTTCAAGCCACACATGAGAGCGTAC
AGATTTGTGGGTCATAAGGAGGATCCAAGCCTTGAGAGGCATTTCAAAGG
ACACCGAGATGCTGTCACTTGTCTTGACTTCAACCCCAACATGAAACAAC
TTGATGACTTCTGCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001642XLOC_001642Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002995-proteinTCONS_00002995-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002995-exon-sc0000024-1575043694:295924..296006TCONS_00002995-exon-sc0000024-1575043694:295924..296006Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1575043694:295226..295310TCONS_00002995-exon-sc0000024-1575043694:295226..295310Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1575043694:294430..294509TCONS_00002995-exon-sc0000024-1575043694:294430..294509Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1575043694:293359..293450TCONS_00002995-exon-sc0000024-1575043694:293359..293450Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1575043694:292985..293093TCONS_00002995-exon-sc0000024-1575043694:292985..293093Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1575043694:292546..292617TCONS_00002995-exon-sc0000024-1575043694:292546..292617Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:295924..296006TCONS_00002995-exon-sc0000024-1510915933:295924..296006Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:295226..295310TCONS_00002995-exon-sc0000024-1510915933:295226..295310Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:294430..294509TCONS_00002995-exon-sc0000024-1510915933:294430..294509Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:293359..293450TCONS_00002995-exon-sc0000024-1510915933:293359..293450Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:292985..293093TCONS_00002995-exon-sc0000024-1510915933:292985..293093Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1510915933:292546..292617TCONS_00002995-exon-sc0000024-1510915933:292546..292617Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:295924..296006TCONS_00002995-exon-sc0000024-1491911889:295924..296006Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:295226..295310TCONS_00002995-exon-sc0000024-1491911889:295226..295310Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:294430..294509TCONS_00002995-exon-sc0000024-1491911889:294430..294509Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:293359..293450TCONS_00002995-exon-sc0000024-1491911889:293359..293450Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:292985..293093TCONS_00002995-exon-sc0000024-1491911889:292985..293093Clytia hemisphaericaexon
TCONS_00002995-exon-sc0000024-1491911889:292546..292617TCONS_00002995-exon-sc0000024-1491911889:292546..292617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:292546..296006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5082	8.31644	76.477	85.7794	38.7964	31.3844	14.0345	15.3288	12.8401	14.3616	9.67715	6.74003	5.0669	5.34057	9.23332	12.0568	20.743	13.649	1.69228	2.40329	5.05733	5.14808	13.429	12.5645	22.5859	26.1502	3.1184	0.998412	10.4754	10.6728
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00002995 vs. Swiss-Prot (Human)
Match: POC1A (POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 4.068e-71
Identity = 112/146 (76.71%), Postives = 129/146 (88.36%), Query Frame = 3 
Query:   84 EDPSLERHFKGHRDAVTCLDFNPNMKQLVSGSMDSSLMVFHFKPHMRAYRFVGHKDAITSVSFSPSGHLIASGSRDKTVRLWVPSVKGESTVFKAHMATVRSVDFSRDGQXXXXXXXXXXXXXWAVHRQKFQFSLTGHMNWVRCAR 521
            EDPSLERHFKGHRDAVTC+DF+ N KQL SGSMDS LMV+H KP  RAYRF GHKDA+T V+FSPSGHL+ASGSRDKTVR+WVP+VKGESTVF+AH ATVRSV F  DGQS +T+SDDK++K+WA HRQKF FSL+ H+NWVRCA+
Sbjct:    7 EDPSLERHFKGHRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00002995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POC1A4.068e-7176.71POC1 centriolar protein homolog A OS=Homo sapiens ... [more]
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