TCONS_00002929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002929
Unique NameTCONS_00002929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002929 ID=TCONS_00002929|Name=TCONS_00002929|organism=Clytia hemisphaerica|type=transcript|length=685bp
GGTCAGTATCGATTGATATTTCGGGTCGGTATCGATTGGTAGTTGGCCTC
GGTATCGATTAATGGCTGGGTTTGGTATTGATTGGAAATGAGAGAATCAC
TATTCAAACATCACCCTGCCCTCCTTATGTTGTTAAAACACCACTCTGCC
CTCTTCatgttgttgaaacatcactctGCCCTCTTCatgttgttgaaaca
tcactctgacctcttcttgttgttgaaacatcatTCAGCCCGCATCTCGT
TGTTGTTGTCGAAACATCAGCCTGCCCTCCTCTTGTTAGTGAAACACCAC
TCTGCCCTCTTCTTGTTATTGAAACGTCACTCtgccctcttcttgttgtt
gaaacatcactctgcactcttcttgttgttgaaacatcatTCTGTCTTCC
TCTTGATGTTGGAATCGTCGATTGATTGTTCACGTATTGCGAGCTGAGTT
ACTTCATTCTGGCAGTACCACCCCTGGCTCCCGAAGTACAGGTAGAACTG
GTGCTGCCAGAATTTTCCATCAGCTTGGTATAGTGAAATCATCTTTTAGT
ATTAGGGTCGGTGtcgatttaaaataaaatggtagcAAAGTTTGAGTCGA
TATCGATCAGATACATATACAGGAGCCAAagcatagtttgcaccccccct
ttttaatagggggggatgccaactttttggagggc
Run BLAST on NCBI

protein sequence of TCONS_00002929-protein

>TCONS_00002929-protein ID=TCONS_00002929-protein|Name=TCONS_00002929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MRESLFKHHPALLMLLKHHSALFMLLKHHSALFMLLKHHSDLFLLLKHHS
ARISLLLSKHQPALLLLVKHHSALFLLLKRHSALFLLLKHHSALFLLLKH
HSVFLLMLESSIDCSRIAS
Run BLAST on NCBI

transcript from alignment at sc0000023:757339..758023

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002929 ID=TCONS_00002929|Name=TCONS_00002929|organism=Clytia hemisphaerica|type=transcript|length=685bp|location=Sequence derived from alignment at sc0000023:757339..758023 (Clytia hemisphaerica)
gccctccaaaaagttggcatccccccctattaaaaagggggggtgcaaac
tatgctTTGGCTCCTGTATATGTATCTGATCGATATCGACTCAAACTTTg
ctaccattttattttaaatcgaCACCGACCCTAATACTAAAAGATGATTT
CACTATACCAAGCTGATGGAAAATTCTGGCAGCACCAGTTCTACCTGTAC
TTCGGGAGCCAGGGGTGGTACTGCCAGAATGAAGTAACTCAGCTCGCAAT
ACGTGAACAATCAATCGACGATTCCAACATCAAGAGGAAGACAGAatgat
gtttcaacaacaagaagagtgcagagtgatgtttcaacaacaagaagagg
gcaGAGTGACGTTTCAATAACAAGAAGAGGGCAGAGTGGTGTTTCACTAA
CAAGAGGAGGGCAGGCTGATGTTTCGACAACAACAACGAGATGCGGGCTG
AatgatgtttcaacaacaagaagaggtcagagtgatgtttcaacaacatG
AAGAGGGCagagtgatgtttcaacaacatGAAGAGGGCAGAGTGGTGTTT
TAACAACATAAGGAGGGCAGGGTGATGTTTGAATAGTGATTCTCTCATTT
CCAATCAATACCAAACCCAGCCATTAATCGATACCGAGGCCAACTACCAA
TCGATACCGACCCGAAATATCAATCGATACTGACC

Coding sequence (CDS) from alignment at sc0000023:757339..758023

>TCONS_00002929 ID=TCONS_00002929|Name=TCONS_00002929|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000023:757339..758023 (Clytia hemisphaerica)
TCAGCTCGCAATACGTGAACAATCAATCGACGATTCCAACATCAAGAGGA
AGACAGAatgatgtttcaacaacaagaagagtgcagagtgatgtttcaac
aacaagaagagggcaGAGTGACGTTTCAATAACAAGAAGAGGGCAGAGTG
GTGTTTCACTAACAAGAGGAGGGCAGGCTGATGTTTCGACAACAACAACG
AGATGCGGGCTGAatgatgtttcaacaacaagaagaggtcagagtgatgt
ttcaacaacatGAAGAGGGCagagtgatgtttcaacaacatGAAGAGGGC
AGAGTGGTGTTTTAACAACATAAGGAGGGCAGGGTGATGTTTGAATAGTG
ATTCTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001602XLOC_001602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002929-proteinTCONS_00002929-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002929-exon-sc0000023-1491911889:757339..758023TCONS_00002929-exon-sc0000023-1491911889:757339..758023Clytia hemisphaericaexon
TCONS_00002929-exon-sc0000023-1510915933:757339..758023TCONS_00002929-exon-sc0000023-1510915933:757339..758023Clytia hemisphaericaexon
TCONS_00002929-exon-sc0000023-1575043694:757339..758023TCONS_00002929-exon-sc0000023-1575043694:757339..758023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:757339..758023 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.447198	0.225293	0.254559	0.678117	0.101509	0	0.194273	0.807384	0.0799314	0.477124	0.625835	0.198554	0.299356	0.0517483	0.564267	0.274487	0.228238	0.291076	0.158461	0.248726	0.0720628	0.319379	0.274284	0.235606	0.551716	0.717241	0.517303	0.330328	0.0834884	0.510149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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