TCONS_00002923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002923
Unique NameTCONS_00002923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002923 ID=TCONS_00002923|Name=TCONS_00002923|organism=Clytia hemisphaerica|type=transcript|length=664bp
GTGACTTTCGTAAGCGTACCAACAGCGTAGAACAAGTGACAGTGGGCACG
AAGTGAGATCACTTTTAGAAAGTGTGCAATTCGCCTCTACTAGGATGAAA
ACCTGTCGTACTCTTTATGGCCAAACAGAAGttcttttgcttttttcaat
CAGGCGAAACCATGGATTACCTCTCTGCCCGTTAAACATTTCAATGTTTA
TTTGTTTTACTATATCTCTTTTGTTCGTTCAACTGCGTCCATGGTAATAT
AGAATAACAATGTCCAAGTTCCAGTATGTTATCGTACCACGTCGTTTCGT
AAGTTCAGAATGCTCAGGGTCTTTTCTGCAGTACGGCGACAATAGTAAAC
TGCATGTTGGGTACGTTTCGTTTGTCGTCTGTTCGATTTTTGAGTTCGTA
TTTTGGCTCGTTGTCTCCGTTTATCGTTGATACATCACATGGAAAGAAAT
AAGATTTATGTAAGTAAGGTTAATATCCAGAGCCCTCGACCCGAGATGTG
GTTTTGGAAGAGATCTACCATCTTTAAACCCATTCACATCTATTCTGAGC
ATGCGTGCTCAGACCCAGATCTCACCCTACTATTTAAAGGCGAGGTCGTG
GAGAAACTAAATTTTGCTCCATCTTGGACTGTAACAGCAGTAACACTAAC
AGATGGAAAGCAGT
Run BLAST on NCBI

transcript from alignment at sc0000023:493311..493974

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002923 ID=TCONS_00002923|Name=TCONS_00002923|organism=Clytia hemisphaerica|type=transcript|length=664bp|location=Sequence derived from alignment at sc0000023:493311..493974 (Clytia hemisphaerica)
ACTGCTTTCCATCTGTTAGTGTTACTGCTGTTACAGTCCAAGATGGAGCA
AAATTTAGTTTCTCCACGACCTCGCCTTTAAATAGTAGGGTGAGATCTGG
GTCTGAGCACGCATGCTCAGAATAGATGTGAATGGGTTTAAAGATGGTAG
ATCTCTTCCAAAACCACATCTCGGGTCGAGGGCTCTGGATATTAACCTTA
CTTACATAAATCTTATTTCTTTCCATGTGATGTATCAACGATAAACGGAG
ACAACGAGCCAAAATACGAACTCAAAAATCGAACAGACGACAAACGAAAC
GTACCCAACATGCAGTTTACTATTGTCGCCGTACTGCAGAAAAGACCCTG
AGCATTCTGAACTTACGAAACGACGTGGTACGATAACATACTGGAACTTG
GACATTGTTATTCTATATTACCATGGACGCAGTTGAACGAACAAAAGAGA
TATAGTAAAACAAATAAACATTGAAATGTTTAACGGGCAGAGAGGTAATC
CATGGTTTCGCCTGattgaaaaaagcaaaagaaCTTCTGTTTGGCCATAA
AGAGTACGACAGGTTTTCATCCTAGTAGAGGCGAATTGCACACTTTCTAA
AAGTGATCTCACTTCGTGCCCACTGTCACTTGTTCTACGCTGTTGGTACG
CTTACGAAAGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001596XLOC_001596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002923-exon-sc0000023-1491911889:493311..493974TCONS_00002923-exon-sc0000023-1491911889:493311..493974Clytia hemisphaericaexon
TCONS_00002923-exon-sc0000023-1510915933:493311..493974TCONS_00002923-exon-sc0000023-1510915933:493311..493974Clytia hemisphaericaexon
TCONS_00002923-exon-sc0000023-1575043694:493311..493974TCONS_00002923-exon-sc0000023-1575043694:493311..493974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:493311..493974 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.25912	0.105151	0	0	0	0	0	0	0.0519296	0	0.0538545	0	0	0	0	0	0	0	0	0.178805	0	1.25574	0.224144	0	0	0.086544	0.176349
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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