TCONS_00002920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002920
Unique NameTCONS_00002920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002920 ID=TCONS_00002920|Name=TCONS_00002920|organism=Clytia hemisphaerica|type=transcript|length=531bp
AGATCATACAATTTAAAGATCGTGAAGAAAAAGTTCTCAGGATCCAAGAT
GTTAAGTTTTTAGCCTTTTCGATTACTGCAGTAATTTGCTTCTGAAATGT
GTAATTACTGTCCATCAGGATTCCAAGGTCTTTCACAACATCTTTGTTTT
CAATCTCAACACCAGACGGTGATGTATAGCTTGTTTGAGTCTTGATCTCA
TGGTTCTTTCCATATCGCAAGagttcaaattttatatcattCAGCTTCAT
ATTGTTGTCATCCGTCCATTTATATATTCTATCAAGATCTTTTTGAAGTA
GGACAGCATTTTCTAGAGTTTTGACTTCCTTTGTGGCGCGAGTGTCATCA
GCGAAGGATTTGAGAAAGCTGTGCACCACTTTCTTGTCAATATCCCCAAT
CAATATGAGGAAAATCAAAGGTCTCAAAACACTACCTTGAGGGACTCCTG
AAATGACCTGTTGTGATTCAGAAGTGACACCATTCACTAGCACTGATTGT
TTTCTCTCTGTTAGGAAGGACTTTAGCCACT
Run BLAST on NCBI

protein sequence of TCONS_00002920-protein

>TCONS_00002920-protein ID=TCONS_00002920-protein|Name=TCONS_00002920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
WLKSFLTERKQSVLVNGVTSESQQVISGVPQGSVLRPLIFLILIGDIDKK
VVHSFLKSFADDTRATKEVKTLENAVLLQKDLDRIYKWTDDNNMKLNDIK
FELLRYGKNHEIKTQTSYTSPSGVEIENKDVVKDLGILMDSNYTFQKQIT
AVIEKAKNLTSWILRTFSSRSLNCMI
Run BLAST on NCBI

transcript from alignment at sc0000023:459789..460319

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002920 ID=TCONS_00002920|Name=TCONS_00002920|organism=Clytia hemisphaerica|type=transcript|length=531bp|location=Sequence derived from alignment at sc0000023:459789..460319 (Clytia hemisphaerica)
AGTGGCTAAAGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAGTGAAT
GGTGTCACTTCTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAG
TGTTTTGAGACCTTTGATTTTCCTCATATTGATTGGGGATATTGACAAGA
AAGTGGTGCACAGCTTTCTCAAATCCTTCGCTGATGACACTCGCGCCACA
AAGGAAGTCAAAACTCTAGAAAATGCTGTCCTACTTCAAAAAGATCTTGA
TAGAATATATAAATGGACGGATGACAACAATATGAAGCTGaatgatataa
aatttgaactCTTGCGATATGGAAAGAACCATGAGATCAAGACTCAAACA
AGCTATACATCACCGTCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAA
AGACCTTGGAATCCTGATGGACAGTAATTACACATTTCAGAAGCAAATTA
CTGCAGTAATCGAAAAGGCTAAAAACTTAACATCTTGGATCCTGAGAACT
TTTTCTTCACGATCTTTAAATTGTATGATCT

Coding sequence (CDS) from alignment at sc0000023:459789..460319

>TCONS_00002920 ID=TCONS_00002920|Name=TCONS_00002920|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000023:459789..460319 (Clytia hemisphaerica)
TGGCTAAAGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAGTGAATGG
TGTCACTTCTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAGTG
TTTTGAGACCTTTGATTTTCCTCATATTGATTGGGGATATTGACAAGAAA
GTGGTGCACAGCTTTCTCAAATCCTTCGCTGATGACACTCGCGCCACAAA
GGAAGTCAAAACTCTAGAAAATGCTGTCCTACTTCAAAAAGATCTTGATA
GAATATATAAATGGACGGATGACAACAATATGAAGCTGaatgatataaaa
tttgaactCTTGCGATATGGAAAGAACCATGAGATCAAGACTCAAACAAG
CTATACATCACCGTCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAAAG
ACCTTGGAATCCTGATGGACAGTAATTACACATTTCAGAAGCAAATTACT
GCAGTAATCGAAAAGGCTAAAAACTTAACATCTTGGATCCTGAGAACTTT
TTCTTCACGATCTTTAAATTGTATGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001593XLOC_001593Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002920-proteinTCONS_00002920-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002920-exon-sc0000023-1491911889:459789..460319TCONS_00002920-exon-sc0000023-1491911889:459789..460319Clytia hemisphaericaexon
TCONS_00002920-exon-sc0000023-1510915933:459789..460319TCONS_00002920-exon-sc0000023-1510915933:459789..460319Clytia hemisphaericaexon
TCONS_00002920-exon-sc0000023-1575043694:459789..460319TCONS_00002920-exon-sc0000023-1575043694:459789..460319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:459789..460319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11628	1.41679	4.33486	3.9642	2.60541	1.76518	2.87084	2.28562	1.4301	0.87328	2.22443	1.80607	2.31425	2.30044	0.598566	1.12221	0.618953	1.19348	0.837878	0.867823	2.98968	3.23737	1.8283	1.31959	2.94528	2.60133	1.71113	1.76141	1.80964	1.07969
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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