Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00073255-protein ID=TCONS_00073255-protein|Name=TCONS_00073255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
cellular_component
GO:0016021 integral component of membrane
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 Score = 19.23 Score = 29.64 Score = 23.72 Expect = 2.6E-39 / Score = 132.7 Expect = 2.8E-17 / Score = 62.4 Score = Expect = 3.3E-40 / Score = 138.2 Expect = 7.61635E-20 / Score = 80.241 Sequence PR00259 PIRSF002419 G3DSA:1.10.1450.10 SSF48652 PF00335 cd03127
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000301 Tetraspanin PRINTS PR00259 TMFOUR coord: 37..63 IPR000301 Tetraspanin PIRSF PIRSF002419 Tetraspanin coord: 15..233 IPR008952 Tetraspanin, EC2 domain GENE3D 1.10.1450.10 coord: 92..190 IPR008952 Tetraspanin, EC2 domain SUPERFAMILY 48652 Tetraspanin coord: 92..188 IPR018499 Tetraspanin/Peripherin PFAM PF00335 Tetraspannin coord: 32..216 None No IPR available CDD cd03127 tetraspanin_LEL coord: 92..191
Blast
BLAST of TCONS_00073255-protein vs. Swiss-Prot (Human)
Match:
TSN3 (Tetraspanin-3 OS=Homo sapiens GN=TSPAN3 PE=2 SV=1)
HSP 1 Score: 102.449 bits (254), Expect = 2.469e-26
Identity = 61/213 (28.64%), Postives = 112/213 (52.58%), Query Frame = 0
Query: 9 GIAGTLSYLSVKFVQEWGVYSNLTADSYAIVPAGIIMAVAIIVFVSSIVGFCGVHYENRCTLGAFVSLLTFLMILEVVSGCLTYAWKDNIDNDLHTNLKKSFDAYYDKKLTTQS-AFDYMQRHLKCCGVDSSNDW-------NTKNSTFPYHQIPTSCCVHDTGTDCS---QYEKNIFKKGCYTQVLENFHRILRYITGIVISFAVFQLIGIM 210
G AG L Y+ + Y + D Y ++PA +I+AV ++F+ ++G C E+RC L FV +L + + EVV L Y ++ ++N++ +++K + Y S A DY+QR L CCG+ + +DW TKN + +P SCC +T ++C+ + +++ +GC V++ I+ ++ ++FA QL+G++
Sbjct: 22 GAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQS-----VPLSCC-RETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGML 228
The following BLAST results are available for this feature:
BLAST of TCONS_00073255-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
T S V C P I S T G I A G T L S Y L S V K F V Q E W G V Y S N L T A D S Y A I V P A G I I M A V A I I V F V S S I V G F C G V H Y E N R C T L G A F V S L L T F L M I L E V V S G C L T Y A W K D N I D N D L H T N L K K S F D A Y Y D K K L T T Q S A F D Y M Q R H L K C C G V D S S N D W N T K N S T F P Y H Q I P T S C C V H D T G T D C S Q Y E K N I F K K G C Y T Q V L E N F H R I L R Y I T G I V I S F A V F Q L I G I M M S A Y L I V V L K K N G Y I R M V D H A N R T G R 20 40 60 80 100 120 140 160 180 200 220 Expect = 2.47e-26 / Id = 28.64 Sequence TSN3
Match Name E-value Identity Description
TSN3 2.469e-26 28.64 Tetraspanin-3 OS=Homo sapiens GN=TSPAN3 PE=2 SV=1 [more]
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