TCONS_00071920-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071920-protein
Unique NameTCONS_00071920-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length849

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071920-protein ID=TCONS_00071920-protein|Name=TCONS_00071920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp
MKENVEIIKTKKNERALNLSSANRWYLKSKQNEKNNKDRKPWRKNSPKPQ
PIVFHQQNLLKNAQNEGYLHDLTEEVLLENSENVHNKRSTYPGDVVYLSA
ASQHLQQVSLLDLCEQLEICDLSNNFIDDIGALRWCHNLFFLDVHSNQLS
SLPGKKFWSSLPKLSLVYLHDNAFSRLEEIKYLSHSPSLSSLTLYDSPVS
LKKNYRHCVVNAVWTLKALDGHVVSDEEIIEDADFTENFKPLKKQFRYQS
PFCSKKPKERRRPTHNEFKLLIKEELSKINTIQSKYCPVLILQRCIRGFL
VRLKYNYIKDTRLWAAVSIQRFYRDRKGYPRPPPTSPNLQFQDHLYQSFS
SMRLDYETYLRLRRSKHAKSSASFKSLHYRLPHAESHDARVHGTCLRSGL
PRPIHRHISVDLQKLEGQTTQILNRASKLSGSKHNHRITVSDRLQDSVIT
RQTGQIPTASRAQRSAHLPRKTPDNLEQIAEDLGVSTLLSHKQPKSAPPT
TIGKYQTQYAFLGKIETPNRIQNDNDEETQFRLSIRKPDVITHDPLEELI
MRTVXIRKPDVITHDPLEELIMRTVEGADDIRTATRDIDRKMKMKSAIVP
SIKKTYQSSHLQRAFMKTQTGMNFSAFKAVEKAYNDRDKAEVLLRKTHVV
KKVKHQEKMTRNKVKRSQKAHKKNACANKDSDRIKILEGLRVHRQRELDL
QDVTAQFREQRAKESERARRSYQFALNFRSQNASVGKALTDHDHVKRRHE
ASQKKVKRVEELRVENDEKKELMRDYQEQKVMLKRADIAAARDAIELQLV
KNSTKRECDLQDHLRKYKNKHTLILRSPNILAVSDLHLQDAIPLTPSLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044656XLOC_044656Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071920TCONS_00071920Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 759..786
NoneNo IPR availablePFAMPF14580LRR_9coord: 115..228
e-value: 1.8E-10
score: 40.5
NoneNo IPR availableGENE3D1.20.5.190coord: 288..328
e-value: 1.0E-5
score: 24.9
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 69..248
e-value: 3.2E-17
score: 61.5
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 92..227
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 116..137
score: 6.78
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 138..159
score: 7.088
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 163..184
score: 5.664

Blast
[Close]
BLAST of TCONS_00071920-protein vs. Swiss-Prot (Human)
Match: LRIQ3 (Leucine-rich repeat and IQ domain-containing protein 3 OS=Homo sapiens GN=LRRIQ3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.846e-53
Identity = 107/236 (45.34%), Postives = 138/236 (58.47%), Query Frame = 0 
Query:   69 LHDLTEEVLLENSENVHNKRSTYPG--DVVYLSAASQHLQQVSLLDLCEQLEICDLSNNFIDDIGALRWCHNLFFLDVHSNQLSSLPGKKFWSSLPKLSLVYLHDNAFSRLEEIKYLSHSPSLSSLTLYDSPVSLKKNYRHCVVNAVWTLKALDGHVVSDEEIIEDADFTENFKPLKKQFRYQSPFCSKKPKERRRPTHNEFKLLIKEELSKINTIQSKYCPVLILQRCIRGFLVR 302
             H    E L  + E  H   +   G  D V++     HL+ +  L  C  L +C  SNNFI DI  L+ C  L  LD+H NQ+ SLP  KFW+ L  L L+YLHDN F++L+ I  LS  P+L +LT++D PVSLKK YRH +VN++W LKALD HV+SDEEII++    E FK    +  +   FC   P  R+  T+ E    IK   SKIN I +   PVLI+QR IRGFLVR
Sbjct:    2 FHGTVTEELTSHEEWSHYNENIREGQKDFVFVKFNGLHLKSMENLQSCISLRVCIFSNNFITDIHPLQSCIKLIKLDLHGNQIKSLPNTKFWNGLKNLKLLYLHDNGFAKLKNICVLSACPTLIALTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKACNHRLFFN--FC---PALRKGTTYEEEINNIKHITSKINAILAHNSPVLIVQRWIRGFLVR 232
The following BLAST results are available for this feature:
BLAST of TCONS_00071920-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRIQ36.846e-5345.34Leucine-rich repeat and IQ domain-containing prote... [more]
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