TCONS_00071653-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071653-protein
Unique NameTCONS_00071653-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071653-protein ID=TCONS_00071653-protein|Name=TCONS_00071653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
EELQKFTKRTKMGSGSSKNDPHKMTKKDLRHFLKEIKPHAAGINDMAMTP
DCSKLLTVGEDTDARLIVSEGRDIHELEGHEKYINCVVCTNKFAFTAAMD
GSIRKWSLDISSPDLGKSCLDLKGHNGSVNRLQLEGSLLFSSSYDRTAKC
WSADTGECLRTFSGHRGSIYPLLYMPKSTEDTETDQTDLQNNHDFLVTGS
ADCNARLWALSSKKTIRIFTGHDGTILTLGSDSAHKTLYTGSTDHTICAY
NMLNGEKICKFTGHKGIVVEIKIVNRLMFSSSADHTVKCWLIGDGEFQGH
LMRTYVGHTHTISALTLFDKYLITGSGDTTVRVYDAKDGRCRKVLKGHTA
TINKIIVNELEEKLYSASNDSTVRVWNWKTIVDDITKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044520XLOC_044520Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071653TCONS_00071653Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 364..378
score: 33.48
coord: 322..336
score: 37.56
coord: 196..210
score: 35.08
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 70..107
e-value: 0.016
score: 24.4
coord: 155..209
e-value: 2.2E-4
score: 30.6
coord: 338..377
e-value: 1.0E-6
score: 38.3
coord: 212..251
e-value: 0.0023
score: 27.2
coord: 115..152
e-value: 0.054
score: 22.6
coord: 298..335
e-value: 9.8E-5
score: 31.7
coord: 254..291
e-value: 0.89
score: 17.3
coord: 29..68
e-value: 3.7
score: 13.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 121..152
e-value: 0.056
score: 14.2
coord: 339..377
e-value: 0.0067
score: 17.2
coord: 156..208
e-value: 0.005
score: 17.5
coord: 73..106
e-value: 0.025
score: 15.4
coord: 300..335
e-value: 0.0054
score: 17.4
coord: 256..290
e-value: 0.048
score: 14.4
coord: 214..248
e-value: 0.19
score: 12.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 122..161
score: 10.609
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 305..344
score: 10.074
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 345..377
score: 12.313
NoneNo IPR availableGENE3D2.80.10.50coord: 128..174
e-value: 1.8E-12
score: 47.0
coord: 184..224
e-value: 2.7E-7
score: 30.2
NoneNo IPR availableGENE3D1.10.10.670coord: 102..127
e-value: 0.043
score: 13.2
coord: 287..307
e-value: 0.0013
score: 18.0
NoneNo IPR availableGENE3D2.130.10.150coord: 20..101
e-value: 5.7E-12
score: 45.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00200WD40coord: 74..377
e-value: 1.47476E-53
score: 179.838
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 308..382
e-value: 2.8E-19
score: 68.8
coord: 225..286
e-value: 1.9E-13
score: 49.7
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 77..386
score: 41.578
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 71..380

Blast
[Close]
BLAST of TCONS_00071653-protein vs. Swiss-Prot (Human)
Match: WDR86 (WD repeat-containing protein 86 OS=Homo sapiens GN=WDR86 PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 9.544e-75
Identity = 138/348 (39.66%), Postives = 199/348 (57.18%), Query Frame = 0 
Query:   33 LKEIKPHAAGINDMAMTPDCSKLLTVGEDTDARLI-VSEGRDIHELEGHEKYINCVVCTNKFAFTAAMDGSIRKWSLDISSPDLGKSCLDL-KGHNGSVNRLQLEGSLLFSSSYDRTAKCWSADTGECLRTFSGHRGSIYPLLY-MPKSTEDTETDQTDLQNNHDFLVTGSADCNARLWALSSKKTIRIFTGHDGTILTLGSDSAHKTLYTGSTDHTICAYNMLNGEKICKFTGHKGIVVEIKIVNRLMFSSSADHTVKCWLIGDGEFQGHLMRTYVGHTHTISALTLFDKYLITGSGDTTVRVYDAKDGRCRKVLKGHTATINKIIVNELEEKLYSASNDSTVRVWN 377
            L+    H  GIN ++++PD  +LLT  ED  ARL   ++G+    L+GHE Y+      ++ AFT + D +IR+W +      L   CL + +GH   VNR+ +  + LFSSSYDRTA+ WS D G+  R F GHR  +  L Y  P     T   +         LVTGS D  A++W ++S    +   GH G +L L  D+   T +TGSTD TI A+++L+GE++  F  H+G V+ +++VNRL++S SAD TVKCWL   GE     +RT+  H   +SAL      L TGSGD   R +DA+ G  R+V +GHT  IN I V+   + LY+AS+D  +R+W+
Sbjct:    8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRRWDV------LTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVDKGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGG--LLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGE----CVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVFRGHTFIINCIQVH--GQVLYTASHDGALRLWD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00071653-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR869.544e-7539.66WD repeat-containing protein 86 OS=Homo sapiens GN... [more]
back to top