TCONS_00069782-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069782-protein
Unique NameTCONS_00069782-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069782-protein ID=TCONS_00069782-protein|Name=TCONS_00069782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
MQDNYFGHHNMQTKLPDTMGQNYGNLYSLNKTTSATVKTPIRPITKLPTT
CTTNTHPKKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQ
VKVWFQNRRNKWKREMSFKVEFAKFNMVPNPLNMGRGVDGTLPNNLMLPT
TTTSPTETSDFQMTSHRYEGYAYRNAFQDSYYNPYPNVFNNQDTQNQHNY
SPLSNSSSNNEVSYQDNNTSMPQTSVALETYDTNSIVYPPPPPPPPAQPP
QQSVAQNMTDYQNQQHHAIYSHYNNCDTQYDTTKYQGMDQQIPSSYDIHN
YSPTGQTSSYTSHRYTDEATQPQTDPITSQISPLVAKYTDEQQQASPYEA
CKYTEHNQQTTSYTPRLTPMVPTTSGREMYTDNTGVVYTTLTDYRNSSEN
QTLNLPNPQFTFGSHY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043454XLOC_043454Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069782TCONS_00069782Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 79..90
score: 43.8
coord: 94..104
score: 60.86
coord: 104..113
score: 79.08
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 57..119
e-value: 5.8E-23
score: 92.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 58..114
e-value: 3.5E-21
score: 74.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 55..115
score: 20.876
NoneNo IPR availableGENE3D1.10.10.60coord: 12..117
e-value: 2.7E-24
score: 84.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..254
NoneNo IPR availableCDDcd00086homeodomaincoord: 58..116
e-value: 2.02381E-21
score: 86.1432
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 90..113
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 47..114

Blast
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BLAST of TCONS_00069782-protein vs. Swiss-Prot (Human)
Match: MSX2 (Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 3.704e-19
Identity = 50/123 (40.65%), Postives = 65/123 (52.85%), Query Frame = 0 
Query:   48 PTTCTTNTHP--KKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQVKVWFQNRRNKWKREMSFKVEFAKFNMVPNPLNMGRGVDGTLPNNLMLPTTTTSPTETSDFQMTSHRY 168
            PTTCT   H   +K RT FT  Q+  LE  F QK+YL+I +R E S  L LTE QVK+WFQNRR K KR    + E  K  M   P+         LP++  LP   +SP + +     S+ +
Sbjct:  131 PTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQ--EAELEKLKMAAKPM---------LPSSFSLPFPISSPLQAASIYGASYPF 242
The following BLAST results are available for this feature:
BLAST of TCONS_00069782-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSX23.704e-1940.65Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=... [more]
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