TCONS_00066668-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066668-protein
Unique Name	TCONS_00066668-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	653

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066668-protein ID=TCONS_00066668-protein|Name=TCONS_00066668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp
MVFDNLRRSLRNTFRRKSKRERGPVSADGKRLLPCSIQLLDGTDVTINLQ
RDALGKDLIKRVLLHLDLVEKDYFALQYMDSKNVPHWIDPVKKVKKQVSI
GPPYSIHFRMKFYPIEPHKLHEELTRYHCFLQIKNDVREGKLKPSLKQSI
EMGAFAVQSELGDFDNTLHVGNYVSEFRLAKNQNEEMEKGVEKKHRLLSG
MNPAECETHYLAIAGNLECYGMDRHLVKGEDGREYTVGLTPHGIVILRGD
QKIGFHIWKSITNITFKQSRFIMCAKTNENETQEYRYELGSPRASKHLWK
CAIEYHTFFRLVAPTEAPERKQGLLTFGSRFRYSGRTLHQADKDNTVNAR
KSNIFKRTRSERFAQRSTIGYIRIGSNVWARAVNGDYYRGVVTALTDKVH
VKFEDGETISHERKEEEALVYDMAPNPNEIKIGTRVIAHWSGVAAYLPGA
VTKIEGNKYQVLYDDGDRLGNRLEQMRILKPPLYFGPGSGRSNLQKKYSM
KTTALIGSSSTSEDGPKRSASVDINRARTPRTPADDDAFFPDRKGSPQVP
RSKSSPAITNRNAPAGGGGSLKSDDQNWNANLSSSSKDPAMKRTQSAPGK
KAHNNNQRNGAAPTRSHSHSSSKGYTVDKNTPALNARLVPNAQTGKSYQI
TDL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041703	XLOC_041703	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066668	TCONS_00066668	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019749	Band_41_domain
IPR002999	Tudor
IPR018980	FERM_PH-like_C
IPR014847	FERM-adjacent
IPR014352	FERM/acyl-CoA-bd_prot_3-hlx
IPR018979	FERM_N
IPR011993	PH_dom-like
IPR019748	FERM_central
IPR019747	FERM_CS
IPR000299	FERM_domain
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005856	cytoskeleton

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005856	cytoskeleton

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019749	Band 4.1 domain	PRINTS	PR00935	BAND41	coord: 66..78 score: 50.8 coord: 144..164 score: 30.56 coord: 205..221 score: 42.16 coord: 131..144 score: 33.63
IPR019749	Band 4.1 domain	SMART	SM00295	B41_5	coord: 29..225 e-value: 4.1E-55 score: 199.1
IPR002999	Tudor domain	SMART	SM00333	TUDOR_7	coord: 428..484 e-value: 0.46 score: 19.5 coord: 370..420 e-value: 18.0 score: 5.9
IPR018980	FERM, C-terminal PH-like domain	SMART	SM01196	FERM_C_3	coord: 229..317 e-value: 1.2E-24 score: 97.9
IPR018980	FERM, C-terminal PH-like domain	PFAM	PF09380	FERM_C	coord: 230..314 e-value: 3.6E-15 score: 56.0
IPR014847	FERM adjacent (FA)	SMART	SM01195	FA_2	coord: 322..368 e-value: 5.8E-12 score: 55.7
IPR014847	FERM adjacent (FA)	PFAM	PF08736	FA	coord: 324..366 e-value: 1.0E-11 score: 44.6
None	No IPR available	GENE3D	2.30.30.140		coord: 422..481 e-value: 8.5E-9 score: 34.5
None	No IPR available	GENE3D	2.30.30.140		coord: 349..415 e-value: 5.0E-5 score: 22.7
None	No IPR available	GENE3D	3.10.20.90		coord: 32..111 e-value: 1.3E-24 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 505..653
None	No IPR available	CDD	cd13186	FERM_C_NBL4_NBL5	coord: 221..310 e-value: 2.32693E-33 score: 122.392
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle	GENE3D	1.20.80.10		coord: 112..217 e-value: 7.5E-24 score: 83.7
IPR018979	FERM, N-terminal	PFAM	PF09379	FERM_N	coord: 37..98 e-value: 1.3E-13 score: 50.5
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 220..310 e-value: 2.6E-20 score: 72.4
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 218..360
IPR019748	FERM central domain	PFAM	PF00373	FERM_M	coord: 118..225 e-value: 1.1E-14 score: 54.7
IPR019748	FERM central domain	CDD	cd14473	FERM_B-lobe	coord: 125..217 e-value: 1.45692E-23 score: 95.0058
IPR019748	FERM central domain	SUPERFAMILY	47031	Second domain of FERM	coord: 116..220
IPR019747	FERM conserved site	PROSITE	PS00660	FERM_1	coord: 87..116
IPR000299	FERM domain	PROSITE	PS50057	FERM_3	coord: 33..313 score: 67.609
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 31..114

Blast

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BLAST of TCONS_00066668-protein vs. Swiss-Prot (Human)
Match: E41L5 (Band 4.1-like protein 5 OS=Homo sapiens GN=EPB41L5 PE=1 SV=3)

HSP 1 Score: 338.576 bits (867), Expect = 1.719e-106
Identity = 160/377 (42.44%), Postives = 237/377 (62.86%), Query Frame = 0

Query:    6 LRRSL-RNTFRRKSKRERG----------PVSADGKRLLPCSIQLLDGTDVTINLQRDALGKDLIKRVLLHLDLVEKDYFALQYMDSKNVPHWIDPVKKVKKQVSIGPPYSIHFRMKFYPIEPHKLHEELTRYHCFLQIKNDVREGKLKPSLKQSIEMGAFAVQSELGDFDNTLHVGNYVSEFRLAKNQNEEMEKGVEKKHRLLSGMNPAECETHYLAIAGNLECYGMDRHLVKGEDGREYTVGLTPHGIVILRGDQKIGFHIWKSITNITFKQSRFIMCAKTNENETQE----YRYELGSPRASKHLWKCAIEYHTFFRLVAPTEAPERKQGLLTFGSRFRYSGRTLHQADKDNTVNARKSNIFKRTRSERFAQRS 367
             RR+L R + R+ +++ER           P + D K ++ C + LLDGTDV+++L + A G++L  +++ HLDL+E DYF L++MDS  V HW+D  K +KKQV IG PY +H R+KFY  EP+ L EELTRY   LQ+K D+  GKL      ++++ A+ +Q+ELGD+D   H    VSEFR    Q EEME  + +K +   G  PA+ ET+YL  A  LE YG+D H+VK  DG +Y++GLTP G+++  GD KIG   W  IT + FK+++  +    ++++ +E    + + L  P+A KHLWKCA+E+H FFRL  P +    + G +  GSRFRYSG+T +Q  K N   AR+S  F+R  S+R+++R+
Sbjct:    5 FRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDSKSIITCRVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESDYFGLRFMDSAQVAHWLDGTKSIKKQVKIGSPYCLHLRVKFYSSEPNNLREELTRYLFVLQLKQDILSGKLDCPFDTAVQLAAYNLQAELGDYDLAEHSPELVSEFRFVPIQTEEMELAIFEKWKEYRGQTPAQAETNYLNKAKWLEMYGVDMHVVKARDGNDYSLGLTPTGVLVFEGDTKIGLFFWPKITRLDFKKNKLTLVVVEDDDQGKEQEHTFVFRLDHPKACKHLWKCAVEHHAFFRLRGPVQKSSHRSGFIRLGSRFRYSGKTEYQTTKTN--KARRSTSFERRPSKRYSRRT 379

The following BLAST results are available for this feature:

BLAST of TCONS_00066668-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066668-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
E41L5	1.719e-106	42.44	Band 4.1-like protein 5 OS=Homo sapiens GN=EPB41L5...	[more]

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TCONS_00066668-protein (polypeptide) - C. hemisphaerica

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