TCONS_00065975-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065975-protein
Unique NameTCONS_00065975-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1006

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065975-protein ID=TCONS_00065975-protein|Name=TCONS_00065975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1006bp
MEGENENERSNEQVNLNSNESLSNVSPESNDQSVNPIPNNTSLKQEPQTP
SNQMKQEGVENTPNGSTLKISAPTPSIEIEPMVSQNGATGQEKKFLKVTT
KVPLSATNDPQKLLQLINGGNNQLSIMKALEAAGMKAPGGKVLAFRTSSG
NFVIKAADSIATSKPVIKTPTSIKTVTTSSNQTTPLAAPRTALSSSVSTF
AKNLNQQTAFLSKVEKRILLIHKPYKTASSLLEEETKKLNNQRLGVKRIF
TLQKHSVRKLARGNYFKQANGFLYNIRSASSSWPKGMPRPTLCMAWRYLA
ASSKHFSSIAHLLRMLHSSIDWDTINDQPHKGIKRVVTSLKGIITIEILD
GEPISSNGLIYRYKIRKIYQPFKVRTKKSKPASPKTPEPAVSRRSLIGIN
LRERTTPLKYTIDEDENLSSSEDENGEVFPKEKTTYEKWMVEDELNPWEV
RQYWDRVKTERSMKNYRTDNKAQNVFKPASLQAPVKKILADSAIKRAKMG
LQKGQLGIKTNIAPLPSLNGQHIYPKPLGIAGSTSISNVLLNKFPSHNKF
APPKGISPLGRSKVITPRQQGRRTAVHPEPEYLIAKSVLEGVIKKVETIQ
RRDNKRKAKKEGAIKKQRMVEISRLGNLLEDRKEKLKREMKRKRAILEEL
MLQELRAEFEVKKAAEGEEIIRMDTIEESDDALLQVDEEEDGEEESLVSE
LPTPQAIKKRVSTDNNEDLEPEHKKKKKKVKKTSLTKEIKEKIEPVIKAS
KQVAPSTPKKANTVGAAAKKTDTKLYCICKTPYEDTKFYVGCDLCNDWFH
GTCVGVSETDAKTMDEFICKECSKQNQIVEEKELYCLCKQPYDDLQFYIG
CDFCQDWFHGTCVGITQIEAAGIKQYRCPNCCDKNDQNLIELRKLSTKEI
DGLKRLHRSLKSHKMAWPFQQPVDATDIPDYYEQIKEPMDFETMSKKLRE
KKYTTLAEFVADVSRIFNNCRIFNPPDSSFYKCAEVLDNFFVQKLKGFKN
TLMKGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041324XLOC_041324Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065975TCONS_00065975Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR003533Doublecortin_dom
IPR018359Bromodomain_CS
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 619..653
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 687..731
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableCDDcd05509Bromo_gcn5_likecoord: 901..998
e-value: 2.07269E-47
score: 164.265
NoneNo IPR availableCDDcd15560PHD2_3_BPTFcoord: 835..881
e-value: 1.80664E-27
score: 105.891
NoneNo IPR availableCDDcd15560PHD2_3_BPTFcoord: 776..822
e-value: 6.87662E-26
score: 101.269
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 914..927
score: 43.63
coord: 962..981
score: 38.04
coord: 928..944
score: 51.66
coord: 944..962
score: 31.01
IPR001487BromodomainSMARTSM00297bromo_6coord: 892..1000
e-value: 9.1E-41
score: 151.4
IPR001487BromodomainGENE3D1.20.920.10coord: 885..1005
e-value: 7.8E-37
score: 125.5
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 905..985
e-value: 2.6E-24
score: 85.0
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 911..981
score: 22.159
IPR001487BromodomainSUPERFAMILY47370Bromodomaincoord: 899..1000
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 776..823
e-value: 1.4E-8
score: 44.5
coord: 835..882
e-value: 8.5E-8
score: 41.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 765..827
e-value: 4.8E-17
score: 61.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 828..884
e-value: 2.5E-14
score: 52.2
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 835..882
e-value: 3.4E-7
score: 29.9
coord: 776..824
e-value: 2.8E-9
score: 36.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 774..825
score: 9.107
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 833..884
score: 8.644
IPR003533Doublecortin domainGENE3D3.10.20.230coord: 211..262
e-value: 0.0043
score: 16.5
IPR018359Bromodomain, conserved sitePROSITEPS00633BROMODOMAIN_1coord: 916..973
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 829..885
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 772..826

Blast
[Close]
BLAST of TCONS_00065975-protein vs. Swiss-Prot (Human)
Match: BPTF (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 4.001e-63
Identity = 98/166 (59.04%), Postives = 125/166 (75.30%), Query Frame = 0 
Query:  834 LYCLCKQPYDDLQFYIGCDFCQDWFHGTCVGITQIEAAGIKQYRCPNCCDKNDQNLIELRKLSTKEIDGLKRLHRSLKSHKMAWPFQQPVDATDIPDYYEQIKEPMDFETMSKKLREKKYTTLAEFVADVSRIFNNCRIFNPPDSSFYKCAEVLDNFFVQKLKGFK 999
            LYC+CK PYD+ +FYIGCD CQ+W+HG CVGI Q EA  I +Y CP C    D   + L  L+ K+ +GLKR+ RSL++HKMAWPF +PVD  D PDYY  IKEPMD  TM ++++ + Y  L EFVAD+++IF+NCR +NP DS FY+CAEVL++FFVQKLKGFK
Sbjct: 2868 LYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTV-LTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 3032

HSP 2 Score: 82.8037 bits (203), Expect = 7.505e-16
Identity = 70/221 (31.67%), Postives = 101/221 (45.70%), Query Frame = 0 
Query:  247 KRIFTLQKHSVRKLARGNYFKQANGFLYNIRSASSSWPKGMPRPTLCMAWRYLAASSKHFSSIAHLLRMLHSSIDWDTINDQ--PHKGIKRVVTSLKGIITIEILDGEPISSNGLIYRYKIRKIYQPFKVRTKKSKPASPK-TPEPAVSRRSLIGINLRER--TTPLKYTIDEDENLSSSEDENGEVFPKEKTTYEKWMVEDELNPWEVRQYWDRVKTERS 462
            K IF L    ++KLAR    ++   F YN + A   WP   PRPT  + WRY   + K  + ++ +LR+L +S+ WD +  +  P  G  R  TS   I T EI+    +   G+   Y IRKI  P  V      P +PK TP P   R+ L    LR +   TP                + G V        E W+ E+EL  WE+R + +RV+ E++
Sbjct: 1844 KSIFVLPNDDLKKLARKGGIREVPYFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAGVSLMLRLLWASLRWDDMAAKAPPGGGTTRTETSETEITTTEIIKRRDVGPYGIRSEYCIRKIICPIGV------PETPKETPTP--QRKGLRSSALRPKRPETP---------------KQTGPVI------IETWVAEEELELWEIRAFAERVEKEKA 2035
The following BLAST results are available for this feature:
BLAST of TCONS_00065975-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BPTF4.001e-6359.04Nucleosome-remodeling factor subunit BPTF OS=Homo ... [more]
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