TCONS_00065724-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065724-protein
Unique NameTCONS_00065724-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065724-protein ID=TCONS_00065724-protein|Name=TCONS_00065724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MGGLFSSKKKTENKQPNRITEQDKAVLSLKQQRDKLKQYQKKINLTLEKE
RQYAKQLLKDNKKDKAKLLLKKKHYQENLLKKTDGQLENIDRLISEVEFA
QVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELL
SGGLTAEDEEDIMNELAELERLELPSVPDTEIPTADVDDQLPDVPSAEPA
TSSKTKTKETERVAMAAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041174XLOC_041174Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065724TCONS_00065724Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
IPR005024Snf7 familyPFAMPF03357Snf7coord: 25..198
e-value: 2.6E-39
score: 134.5

Blast
[Close]
BLAST of TCONS_00065724-protein vs. Swiss-Prot (Human)
Match: CHMP6 (Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 5.065e-69
Identity = 101/185 (54.59%), Postives = 142/185 (76.76%), Query Frame = 0 
Query:    1 MGGLFSSKKKTENKQPNRITEQDKAVLSLKQQRDKLKQYQKKINLTLEKERQYAKQLLKDNKKDKAKLLLKKKHYQENLLKKTDGQLENIDRLISEVEFAQVELKVVEGLKQGNEALKKLHEIMSVEDVERIMDEAQEGIEYQNEIDELLSGGLTAEDEEDIMNELAEL--ERLELPSVPDTEIP 183
            MG LF  KK++      R+TEQDKA+L LKQQRDKL+QYQK+I   LE+ER  A+QLL+D +K++AKLLLKKK YQE LL +T+ Q+ +++ ++  +EF Q+E+KV+EGL+ GNE L K+H++MS+E+VERI+DE QE +EYQ +IDELL+G  T EDE+ I+ EL+ +  E++ELP VP   +P
Sbjct:    1 MGNLFGRKKQS------RVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLP 179
The following BLAST results are available for this feature:
BLAST of TCONS_00065724-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHMP65.065e-6954.59Charged multivesicular body protein 6 OS=Homo sapi... [more]
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