TCONS_00059877-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059877-protein
Unique NameTCONS_00059877-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length114

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059877-protein ID=TCONS_00059877-protein|Name=TCONS_00059877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MEVFLMIKRQKQSIFLDVKETCQVLEVKKMVGGIMKKSPEDIKLLFKSLP
LDDSKSLKDVGLTSQTTKAQSPALIGLCLKEGDNDFEELTITPVSKPPEL
PPQMKTQESPTAGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037657XLOC_037657Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059877TCONS_00059877Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 3..80
e-value: 0.0026
score: 27.0
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 7..66
e-value: 1.5E-7
score: 30.9
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..67
score: 12.901
NoneNo IPR availableGENE3D3.10.20.90coord: 1..99
e-value: 4.2E-9
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..114
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 1..105

Blast
[Close]
BLAST of TCONS_00059877-protein vs. Swiss-Prot (Human)
Match: ELOB (Elongin-B OS=Homo sapiens GN=ELOB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.016e-31
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 0 
Query:    1 MEVFLMIKRQKQSIFLDVKETCQVLEVKKMVGGIMKKSPEDIKLLFKSLPLDDSKSLKDVGLTSQTTKAQSPALIGLCLKEGDNDFEELTITPVSKPPELPPQMKTQESPTAGS 114
            M+VFLMI+R K +IF D KE+  V E+K++V GI+K+ P++ +L      LDD K+L + G TSQT + Q+PA +GL  +  D+ FE L I P S PPELP  MK Q+S ++ +
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADDTFEALCIEPFSSPPELPDVMKPQDSGSSAN 113
The following BLAST results are available for this feature:
BLAST of TCONS_00059877-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOB3.016e-3146.49Elongin-B OS=Homo sapiens GN=ELOB PE=1 SV=1[more]
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