TCONS_00057171-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057171-protein
Unique Name	TCONS_00057171-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	674

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057171-protein ID=TCONS_00057171-protein|Name=TCONS_00057171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=674bp
MILELLMWTVFVASSVILVLWILTSPPADRKTRTAPENEDRYAKNRFIPN
KVPKDADVIVIGSGMGGMGCASILSKYGKKVIVLEHHDKLGGCTHTFSWS
RANMAEEGHTTCEFDTGCHYTAVDMSMPTMRSGAVMKYLTEGQAKWHDLG
DPYDCVVFPHDSKVDPGCPNNDAYNFLCRKDRLINEITQKINPNEPLVPQ
RLNAFLQFCRHARGTIVKMFFVRMLPRWVEKLLDFLTIPYYTYGKLTTQY
VLSAMLEHGFTEEEVLAQKELPKEPEIDLPNTWNRMKGVMVHPLGDYACQ
PSDSTVVAHALTACYYMNGAAYTSGQTQSISNSCAKVVYEHGGECFVNAH
VEEIILKEGKAVGVRVCKATSMEGLKSADERPEMTELYAPIIINATGMHT
LYNKLLSPELPLVKEYKTTNKCIPSFGHNYLFVAIKGDADEVGIPVTNTW
YFNGYDTDNCFDKYFENPTEHRPPTVYLGFPCTKDPTWKKRFPGISNCIL
ISDAKYEWFEKWQDMRTHKRGDEYDQYKQKFADKLLEVLYEKVPQVKGKV
LWYECGTPVSDSNFLQSFRGGSYGTRCNLEFANKDNSRWVMRADTEIPNL
FMAGQDAWTPAVAGAMYGGMLGAIKVLGFFKGVGLLITIMRRQANDIQKE
TGWSSASSFAKAVQLFFSDTPMNR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036028	XLOC_036028	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057171	TCONS_00057171	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13450	NAD_binding_8	coord: 60..121 e-value: 3.9E-10 score: 39.7
IPR023753	FAD/NAD(P)-binding domain	GENE3D	3.50.50.60		coord: 34..628 e-value: 6.3E-27 score: 94.2
IPR023753	FAD/NAD(P)-binding domain	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 593..631 coord: 54..439

Blast

[Close]

BLAST of TCONS_00057171-protein vs. Swiss-Prot (Human)
Match: RETST (All-trans-retinol 13,14-reductase OS=Homo sapiens GN=RETSAT PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 2.463e-75
Identity = 184/623 (29.53%), Postives = 285/623 (45.75%), Query Frame = 0

Query:   26 PPADRKTRTAPENEDRYAKNRFIPNKVPKDADVIVIGSGMGGMGCASILSKYGKKVIVLEHHDKLGGCTHTFSWSRANMAEEGHTTCEFDTGCHYTAVDMSMPTMRSGAVMKYL----TEGQAKWHDLGDPYDCVVF--PHDSKVDPGCPNNDAYNFLCRKDRLINEITQKINPNEPLVPQRLNAFLQFCRHARGTIVKMFFVRMLPRWVEKLLDF--LTIPYYTYGKLTTQYVLSAMLEHGFTEEEVLAQKELPKEPEIDLPNTWNRMKGVMVHPLGDYACQPSDSTVVAHALTACYYMNGAAYTSGQTQSISNSCAKVVYEHGGECFVNAHVEEIILKE-GKAVGVRVCKATSMEGLKSADERPEMTELYAPIIINATGMHTLYNKLLSPE---LPLVKEYKTTNKCIPSFGHNYLFVAIKGDADEVGIPVTNTWYFNGYDTDNCFDKYFENPTEHRP---PTVYLGFPCTKDPTWKKRFPGISNCILISDAKYEWFEKWQDMRTHKRGDEYDQYKQKFADKLLEVLYEKVPQVKGKVLWYECGTPVSDSNFLQSFRGGSYGTRCNLEFANKDNSRW------VMRADTEIPNLFMAGQDAWTPAVAGAMYGGMLGAIKVL 627
            PPA   T    E   +  K  F  N+VP+  DV+VIGSG GG+  A+IL+K GK+V+VLE H K GGC HTF          G    EFDTG HY         M  G++ +++    TEGQ  W  L  P+D +V   P+  K  P      AY         I  + +K    E ++    + +++  +           ++ LP  V +LLD   L   +  + + +TQ +   + + G + E                      ++ V+ +    Y   P+ S    HAL   +YM G  Y  G +  I+     V+   GG     A V+ ++L   GKA GV V K              E+  +Y PI+++  G+   Y  LL      LP VK+   T +  P  G   +F+ ++G  +++ +P TN + +   D D   ++Y   P E      P ++  FP  KDPTW+ RFPG S  I++    YEWFE+WQ     KRG +Y+ +K  F +  + V+ +  PQ++GKV     G+P+++  +L + RG  YG       A+ D  R        +RA + IPNL++ GQD +T  + GA+ G +L +  +L
Sbjct:   40 PPAPLVTDK--EARKKVLKQAFSANQVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTF----------GKNGLEFDTGIHYIG------RMEEGSIGRFILDQITEGQLDWAPLSSPFDIMVLEGPNGRKEYPMYSGEKAY---------IQGLKEKFPQEEAII----DKYIKLVKVVSSGAPHAILLKFLPLPVVQLLDRCGLLTRFSPFLQASTQSLAEVLQQLGASSE----------------------LQAVLSYIFPTYGVTPNHSAFSMHALLVNHYMKGGFYPRGGSSEIAFHTIPVIQRAGGAVLTKATVQSVLLDSAGKACGVSVKKGH------------ELVNIYCPIVVSNAGLFNTYEHLLPGNARCLPGVKQQLGTVR--PGLGMTSVFICLRGTKEDLHLPSTNYYVYYDTDMDQAMERYVSMPREEAAEHIPLLFFAFPSAKDPTWEDRFPGRSTMIMLIPTAYEWFEEWQAELKGKRGSDYETFKNSFVEASMSVVLKLFPQLEGKVESVTAGSPLTNQFYLAAPRGACYG-------ADHDLGRLHPCVMASLRAQSPIPNLYLTGQDIFTCGLVGALQGALLCSSAIL 588

The following BLAST results are available for this feature:

BLAST of TCONS_00057171-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057171-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RETST	2.463e-75	29.53	All-trans-retinol 13,14-reductase OS=Homo sapiens ...	[more]

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TCONS_00057171-protein (polypeptide) - C. hemisphaerica