TCONS_00056954-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056954-protein
Unique NameTCONS_00056954-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056954-protein ID=TCONS_00056954-protein|Name=TCONS_00056954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MAAPIQQISNGAIPIMSGVAGTPVQQPAVVYQQQQPMIVAGAAPMGYAPR
KPYIRNPNEEHCKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTN
EPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMFIEVRKFQRKSEYDPD
KANTTLTTANGAAQLNFQYKGPMKCSPEMKVFVGGIGIGTTEDDVKKYFE
QFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVE
VKGSDEQQAHLNKKKAEGMTIRYASAGRGRGIGSGNIGTVTGYGAYANLG
QPLIVNPAQHSVQYTVPAAATGGYVYDPASNTYYQLPGTVVAGGAVAGAV
QTVGTSVAAASPYAGATIAAGQQVLTSPQVGQRTLQATDMIQGLAAGSTV
ALGAAYPSETSTFGPTRHNVIGASAQQPMAGNTVADPHVVYSTATSISAG
DAALSAARGYHPYGR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056954TCONS_00056954Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 180..252
e-value: 1.2E-13
score: 61.3
coord: 63..139
e-value: 3.4E-21
score: 86.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 181..248
e-value: 6.4E-10
score: 38.6
coord: 64..125
e-value: 6.0E-14
score: 51.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 179..256
score: 13.737
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..143
score: 15.801
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 174..281
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 38..146
NoneNo IPR availableGENE3D3.30.70.330coord: 24..144
e-value: 6.1E-20
score: 71.0
NoneNo IPR availableGENE3D3.30.70.330coord: 145..270
e-value: 5.6E-16
score: 58.2

Blast
[Close]
BLAST of TCONS_00056954-protein vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.681e-33
Identity = 72/210 (34.29%), Postives = 106/210 (50.48%), Query Frame = 0 
Query:   51 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMFIEVRKFQRKSEYDPDKANTTLTTANGAAQLNFQYKGPMKCSPEMKVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQ 258
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K       F R+++                         P   +   K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPRRAQ-------------------------PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00056954-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H1.681e-3334.29RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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