TCONS_00052093-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052093-protein
Unique NameTCONS_00052093-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052093-protein ID=TCONS_00052093-protein|Name=TCONS_00052093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
RKRTASCQISHQFDFDFTLKMETAQMNHTGGNSNGEIKKSDAEWKSNLKL
PPKDGRIKTADVTDTKGNEFEDYCLKRELLMGIFEKGYERPSPIQEQSIP
IALAGRDIMARAKNGTGKTAAYLIPLLERVNIDNTKIQALVLVPTRELAL
QTSQICKDLSNHLGTKVMVTLGGTSLKDDIMRLYQTVHVVVATPGRILDL
MKKGVADMSGCQMLVMDEADKLLSMDFKRLLDILISMLPSNRQILLYSAT
FPLSVKEFKDKHLNKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLF
SKLQVNQSIIFCNSVQRVELLARKITQLGYSCYYIHSRMQQSHRNRVFHD
FRSGQCRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFG
HLGIAINLITYDDRFNLYQIEQELGTEIKPIPPSIDKSLYVAEFQQAATT
AEEDEDKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032991XLOC_032991Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052093TCONS_00052093Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 319..400
e-value: 2.5E-30
score: 116.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 294..400
e-value: 1.3E-28
score: 99.5
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 279..439
score: 24.342
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 87..283
e-value: 2.8E-55
score: 199.7
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 99..269
score: 29.642
NoneNo IPR availableGENE3D3.40.50.300coord: 20..281
e-value: 7.0E-49
score: 165.9
NoneNo IPR availableGENE3D3.40.50.300coord: 282..435
e-value: 6.1E-44
score: 148.9
NoneNo IPR availableCDDcd00268DEADccoord: 70..270
e-value: 1.26445E-98
score: 295.933
NoneNo IPR availableCDDcd00079HELICccoord: 280..408
e-value: 1.50849E-40
score: 141.606
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 93..257
e-value: 1.5E-42
score: 145.3
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 215..223
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 68..96
score: 9.729
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 136..422

Blast
[Close]
BLAST of TCONS_00052093-protein vs. Swiss-Prot (Human)
Match: DDX6 (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 316/418 (75.60%), Postives = 367/418 (87.80%), Query Frame = 0 
Query:   37 IKKSDAEWKSNLKLPPKDGRIKTADVTDTKGNEFEDYCLKRELLMGIFEKGYERPSPIQEQSIPIALAGRDIMARAKNGTGKTAAYLIPLLERVNIDNTKIQALVLVPTRELALQTSQICKDLSNHLG-TKVMVTLGGTSLKDDIMRLYQTVHVVVATPGRILDLMKKGVADMSGCQMLVMDEADKLLSMDFKRLLDILISMLPSNRQILLYSATFPLSVKEFKDKHLNKPYEINLMDELTLKGITQYYAFVEEKQKVHCLNTLFSKLQVNQSIIFCNSVQRVELLARKITQLGYSCYYIHSRMQQSHRNRVFHDFRSGQCRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINLITYDDRFNLYQIEQELGTEIKPIPPSIDKSLYVAEFQQAATTAEE 453
            IK  D +WK  LKLPPKD RIKT+DVT TKGNEFEDYCLKRELLMGIFE G+E+PSPIQE+SIPIAL+GRDI+ARAKNGTGK+ AYLIPLLER+++    IQA+V+VPTRELALQ SQIC  +S H+G  KVM T GGT+L+DDIMRL  TVHVV+ATPGRILDL+KKGVA +   QM+V+DEADKLLS DF ++++ +I  LP NRQILLYSATFPLSV++F + HL KPYEINLM+ELTLKG+TQYYA+V E+QKVHCLNTLFS+LQ+NQSIIFCNS QRVELLA+KI+QLGYSC+YIH++M+Q HRNRVFHDFR+G CRNLVC+DLFTRGIDIQAVNVVINFDFPK +ETYLHRIGRSGRFGHLG+AINLITYDDRFNL  IE++LGTEIKPIP +IDKSLYVAE+       E+
Sbjct:   66 IKPGD-DWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEK 482
The following BLAST results are available for this feature:
BLAST of TCONS_00052093-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX60.000e+075.60Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
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