TCONS_00002620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002620
Unique NameTCONS_00002620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002620 ID=TCONS_00002620|Name=TCONS_00002620|organism=Clytia hemisphaerica|type=transcript|length=2553bp
GTCCAAGCATTCTACTTCTGACTCTCTACCAATTTTCCAAGCTCACTCAG
ATACTGCATGTAATATTTGTAATTTGCCAACAGTGCGCCATACATaaggg
attcaaaataacaaaaattacgAAAGAATCAAAAGTGATCGGAAATCCTT
CTAACACAAATATTTCTTCGCTAGCTGAAGCCGCAAAACAATGCAATTTA
GTGGATCTGAGCAAGTTTGGGGATCCTACTTACACTTTTGCTTTCATTGA
TACCGGTTTTGTGATCGGGTTCAGAGTGGAAGTGGAGATCGATGGCAGAT
GGAATTTATACCATGGAAAGTACTTGATTAAAAAGGATCATAACATTTTA
AAATGTCTACCTGAGGTAATTGATTTGGAAAATGCCTTGTTGATTTTTGA
AACGCTAAGTAAGTGCAAACTTTGTCAGGGAAATGATGACTTTGAGAAAC
TTATTAATGAAAAAGTTGATCCTAAAGAAAGTTCTTTTAAGGACAAGCAA
GGCAATATTAGGGCTAGAATTGAAAATGATAACTTATCAGGTGTGGATGA
CCTCACAACGATCCGTGTCAAAGATTGTGAGTTGATGGTGAGGAATGATG
CTATGAGGTGCCAGCCATGCATAAAATACCGCCAGTATTTGCATAATACT
GTTTATCGGCGCTCAATGAGTCCAGAAGTACCATCCAAATTCACTGCAAA
CAAACATCTAACTAAAGATTTTTTGATGATAAAGGCAACTAATCaacaaa
aaaagatcaaatcaTTGAAGCGTAGCCTTGAGTCCATGAGAACCTTTGTT
AGTCAATTGGTTGAAAGTGAAGGATGTGCTGTAGAGAACAATCTATTGAA
AGAAATATGCAACAACGTAGTTTCAACAAATGATTCACCTTTTGATGAGG
ACAGTCCTATCCACTTGCTTTGGGAACAACAGAAAAAGCAGGTGTCATTG
GAAAACAAACGGACTATGAGATGGCACCCTGTGATGCTTCGATGGTGCAT
ATCCATTTACCTTAAATCTTCTGGAACATATGAGCATCTACGAAATTCTG
GTTTTTTGGTCCTGCCATCCAAAAAAACCTTGGATAAATACGTCAACTTC
ACTACCCATAACACTGGATTCAACCCTGATGTATTAGAGAATCTACTTCG
ATTAACAGAGAACCAGCAACATTTGCATGTTGGTCTTGTGCATGACGAAA
TGAAGATAAAATCTGGTATTGTCTACAGTAAGAATTCTGGCAAGATTGTT
GGATTTTGTGATCTCGGAGATATCAATAATGAGATAACCTGTTTTGATCG
CCGTGTAACTAACCAAGACGAGCATCCTCCTATTGCTACTCACGTACTCA
CTCTAATGGTGTGGTTTGTTGTCAGTGATGGGGCTTCACCAAACAGGAAG
TTTTACAACTACCACAAAAGAAAGGAAAACATTATTGATGGGGTTGTTTA
CTCGACGATCAATAAGTTCGACCCAACTCGtcgaatttattttatttgtg
aCGTTCCTCACTTAATCAAAACTACACGAAATTGTGTAGCAAATTCACAT
GCTCATCAAAATACCAGAGAACTCTTTCTTGATGGGAAAGAGATTAGCTG
GCAGCATGTCATTGGACTTTTGGAATACGACGTTGGTATAGATCGTGATG
CACCTGGATTTCATCAAACTAAACTGACTGTTGAACATGTGCGTTTGACA
CCAAGAGCCAGGATGAATGTTGCCTTGGCGGCTCAAGTTTTAAGCAAATC
AGTTGCTGATGCCATGGAACAGCACAACCCTGATGTTACTGTCTCGACCA
GAAAACTATTCCTTAAAATAGACGAATTTTTTGGTATCATGAACGTCAAA
TCTACAGTGGCAGGAATTCACACGAACAAAGAAAACTTGAAGCCGTTCAA
AAAACCTAACCCTTTAAAACAAGATGGACGTTTGGATTGGTTGGAGACAA
ACTTTCTCAAATTCTTGAACGATTGGCAAGCAGAAATAAAAGCAATTCCT
GATGTTGACGataaaagaaaattaagaatGTGCCTTTCCCCTCAAACTCT
AACTGGATTACGAATTACTGTTCATTCTACAATCAGATTGATTCCGATAC
TTCTCAAAGAACCGGGAATAGAATTCGTTTTGACCGACCGCTTTAATCAA
GATCCAATTGAAGAACATTTTGGTAAGCAAAGAGCAAGACTTGGTGGTTG
TGACAATCCTAGCCTAGGTCAATATGGATCAAGTGAAGGAAAACTGATAA
CTGCGAAGGATCAAGCCATTCTTGTCATGCGTGGTAACAGTTCTGGTAgg
aataaagtaaaacaaaaacctCAGATTAACATTCATGACATGACACCTCT
GCCAAAACGTCCAAAAACCGAAcaaaggaagaagaaaaaagatgacgatg
atgatggtCTATTTGGAAATTTAGCAAAATGACTTTTTAATTGCACGTAA
TcaaaggaaaaaattaaaatgataatttttcttgCTTAAAATCAATATAT
AATGGATCTTTTAGGGCAATTTGCCATTTCTATCTTTTGTTTCAGTCTCT
TTT
Run BLAST on NCBI

transcript from alignment at sc0000021:446379..450502+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002620 ID=TCONS_00002620|Name=TCONS_00002620|organism=Clytia hemisphaerica|type=transcript|length=4124bp|location=Sequence derived from alignment at sc0000021:446379..450502+ (Clytia hemisphaerica)
GTCCAAGCATTCTACTTCTGACTCTCTACCAATTTTCCAAGCTCACTCAG
ATACTGCATGTAATATTTGTAATTTGCCAACAGTGCGCCATACATaaggg
attcaaaataacaaaaattacgAAAGAATCAAAAGTGATCGGAAATCCTT
CTAACACAAATATTTCTTCGCTAGCTGAAGCCGCAAAACAATGCAATTTA
GTGGATCTGAGCAAGTTTGGGGATCCTACTTACACTTTTGCTTTCATTGA
TACCGGTTTTGTGATCGGGTTCAGAGTGGAAGTGGAGATCGATGGCAGAT
GGAATTTATACCATGGAAAGTACTTGATTAAAAAGGATCATAACATTTTA
AAATGTCTACCTGAGGTAATTGATTTGGAAAATGCCTTGTTGATTTTTGA
AACGCTAAGTAAGTGCAAACTTTGTCAGGGAAATGATGACTTTGAGAAAC
TTATTAATGAAAAAGTTGATCCTAAAGAAAGTTCTTTTAAGGACAAGCAA
GGCAATATTAGGGCTAGAATTGAAAATGATAACTTATCAGGTGTGGATGA
CCTCACAACGATCCGTGTCAAAGATTGTGAGTTGATGGTGAGGAATGATG
CTATGAGGTGCCAGCCATGCATAAAATACCGCCAGTATTTGCATAATACT
GTTTATCGGCGCTCAATGAGTCCAGAAGTACCATCCAAATTCACTGCAAA
CAAACATCTAACTAAAGATTTTTTGATGATAAAGGCAACTAATCaacaaa
aaaagatcaaatcaTTGAAGCGTAGCCTTGAGTCCATGAGAACCTTTGTT
AGTCAATTGGTTGAAAGTGAAGGATGTGCTGTAGAGAACAATCTATTGAA
AGGTTTGTTGAAAAGGAATTCTTGgtttttatgtttaaaaaaaagtttat
taataaaagtttcaattttctttgcttttacCCAAAAATATTCAACTTTT
GACTAACCTTGTCAAATAGGTTAGTAAGTTTAGCATCTAACTGAATTATT
TCACAAAACGAAGTCTTTACTAAATGCGGGGTATTTTGGGTTACACTTTC
TCTAACATGAACAATATTTTCACAACAAGATTCCTCATTTAGACATTCTA
ATTGTCGACATATCATGATATTTAATGCTTTCTGTCTTTATACAGAAATA
TGCAACAACGTAGTTTCAACAAATGATTCACCTTTTGATGAGGACAGTCC
TATCCACTTGCTTTGGGAACAACAGAAAAAGCAGGTGTCATTGGAAAACA
AACGGACTATGAGATGGCACCCTGTGATGCTTCGATGGTGCATATCCATT
TACCTTAAATCTTCTGGAACATATGAGCATCTACGAAATTCTGGTTTTTT
GGTCCTGCCATCCAAAAAAACCTTGGATAAATACGTCAACTTCACTACCC
ATAACACTGGATTCAACCCTGATGTATTAGAGAATCTACTTCGATTAACA
GAGAACCAGCAACATTTGCATGTTGGTCTTGTGCATGACGAAATGAAGAT
AAAATCTGGTATTGTCTACAGTAAGAATTCTGGCAAGATTGTTGGATTTT
GTGATCTCGGAGATATCAATAATGAGATAACCTGTTTTGATCGCCGTGTA
ACTAACCAAGACGAGCATCCTCCTATTGCTACTCACGTACTCACTCTAAT
GGTCCGTGCCATTAACTTTCATCTCAATTACCCTGTCGCCTATTTTGCAG
GAGCTGGTGTCAAGGGATATGAACTGTATCATATCATTTGGGAAGCCATC
CGAATTTTAGAATTCCTTGACTTCAAGGTATCATACTGCTTGTATACTGT
TTATATTATTTCAAGTCTTTTGGTAAATTCGTTTTAAGTTTTACCTTTCC
TGCTTGCTTATTACTTTTATAATGTCTTCAATTGAATTAAAttgaatgga
attttttttgatttgacaaTCATTATCTGATGAAACCTTTTTGGTGTCTT
TTTAGTAGAATTGGTTTGTAAATGTGGAGACTTTTCATATTTCTAGGTGT
GGTTTGTTGTCAGTGATGGGGCTTCACCAAACAGGAAGTTTTACAACTAC
CACAAAAGAAAGGAAAACATTATTGATGGGGTTGTTTACTCGACGATCAA
TAAGTTCGACCCAACTCGtcgaatttattttatttgtgaCGTTCCTCACT
TAATCAAAACTACACGAAATTGTGTAGCAAATTCACATGCTCATCAAAAT
ACCAGAGAACTCTTTGTAAGAATATCATTTAgtatgtttcaataaaaact
caTTAGTGTTTTCCCCCTCTGTTTTGTTGTCTAAATCGAAATACCTTATA
ATCACTGGATCAAAATTAAGAAAGGTACTATCATACAATGAGGCTGAAAT
TGAGAATgactttgttttattttacatttaaGCTTGATGGGAAAGAGATT
AGCTGGCAGCATGTCATTGGACTTTTGGAATACGACGTTGGTATAGATCG
TGATGCACCTGGATTTCATCAAACTAAACTGACTGTTGAACATGTGCGTT
TGACACCAAGAGCCAGGATGAATGTTGCCTTGGCGGCTCAAGTACGTATT
TTTGAGGAGccataaaaatttgatttcagaATTTTAGACAAAACTTTTCA
CACAAAACGTTTTAATATTCAGTTGTAATTAAACTGTCTCTACTATTGAT
CCCTAGCTTATACACATGTCTCTTGTTTTAGGTTTTAAGCAAATCAGTTG
CTGATGCCATGGAACAGCACAACCCTGATGTTACTGTCTCGACCAGAAAA
CTATTCCTTAAAATAGACGAATTTTTTGGTATCATGAACGTCAAATCTAC
AGTGGCAGGAATTCACACGAACAAAGAAAACTTGAAGCCGTTCAAAAAAC
CTAACCCTTTAAAACAAGATGGACGTTTGGATGTAAGAATATATTTATAT
GATAATATAGTAAGATAAAGGGCTCGTTATACGGTATCTAAAGAGTATCA
ACAAGACCTTTTTCACACCTTTGATAATTATTTCTATTCTTTATTTTGCA
GTGGTTGGAGACAAACTTTCTCAAATTCTTGAACGATTGGCAAGCAGAAA
TAAAAGCAATTCCTGATGTTGACGataaaagaaaattaagaatGTGCCTT
TCCCCTCAAACTCTAACTGGATTACGAATTACTGGTATTTATATTTTCTG
CAATCATTAGATGATTAATATTTTAATTTCNAGCAATTCCTGATGTTGAC
GataaaagaaaattaagaatGTGCCTTTCCCCTCAAACTCTAACTGGATT
ACGAATTACTggtatttatatttatataaaaCTTTTGTCAATCGAAACGA
GTTCTTTTTGTTGAAATACAAAACGTAAGCAGACTCAAGAAACCCTCTGA
TTTTCCTGGTGGACAATGATTCATCTTATTCCCCTTCCTGAATAACAATC
TATTGCATGAAATTACGTTACTGATAACATAATTTCTCTACTTGTTTAGT
TCATTCTACAATCAGATTGATTCCGATACTTCTCAAAGAACCGGGAATAG
AATTCGTTTTGACCGACCGCTTTAATCAAGATCCAATTGAAGAACATTTT
GGTGAGTAAACACATTCTCCTCAAAACAGTAAACTTTCGTTGAGACTCAC
CGCTCTTATTTTTCAACACCTGGAATTGCTTTGAAACAAATCTAACGAGG
GCTGTTATTGATTGTTCTCATTTTTGACACTTTGAGTCCCTTACACTCAT
ATAATTAtctcaaaatattgaaagataTACTACTTTCTTGAAGGTAAGCA
AAGAGCAAGACTTGGTGGTTGTGACAATCCTAGCCTAGGTCAATATGGAT
CAAGTGAAGGAAAACTGATAACTGCGAAGGATCAAGCCATTCTTGTCATG
CGTGGTAACAGTTCTGGTAggaataaagtaaaacaaaaacctCAGATTAA
CATTCATGACATGACACCTCTGCCAAAACGTCCAAAAACCGAAcaaagga
agaagaaaaaagatgacgatgatgatggtCTATTTGGAAATTTAGCAAAA
TGACTTTTTAATTGCACGTAATcaaaggaaaaaattaaaatgataatttt
tcttgCTTAAAATCAATATATAATGGATCTTTTAGGGCAATTTGCCATTT
CTATCTTTTGTTTCAGTCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001419XLOC_001419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002620-exon-sc0000021-1491911889:446379..447230TCONS_00002620-exon-sc0000021-1491911889:446379..447230Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:446379..447230TCONS_00002620-exon-sc0000021-1510915933:446379..447230Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:446379..447230TCONS_00002620-exon-sc0000021-1575043694:446379..447230Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:447524..448029TCONS_00002620-exon-sc0000021-1491911889:447524..448029Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:447524..448029TCONS_00002620-exon-sc0000021-1510915933:447524..448029Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:447524..448029TCONS_00002620-exon-sc0000021-1575043694:447524..448029Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:448375..448593TCONS_00002620-exon-sc0000021-1491911889:448375..448593Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:448375..448593TCONS_00002620-exon-sc0000021-1510915933:448375..448593Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:448375..448593TCONS_00002620-exon-sc0000021-1575043694:448375..448593Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:448761..448919TCONS_00002620-exon-sc0000021-1491911889:448761..448919Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:448761..448919TCONS_00002620-exon-sc0000021-1510915933:448761..448919Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:448761..448919TCONS_00002620-exon-sc0000021-1575043694:448761..448919Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:449060..449260TCONS_00002620-exon-sc0000021-1491911889:449060..449260Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:449060..449260TCONS_00002620-exon-sc0000021-1510915933:449060..449260Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:449060..449260TCONS_00002620-exon-sc0000021-1575043694:449060..449260Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:449380..449512TCONS_00002620-exon-sc0000021-1491911889:449380..449512Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:449380..449512TCONS_00002620-exon-sc0000021-1510915933:449380..449512Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:449380..449512TCONS_00002620-exon-sc0000021-1575043694:449380..449512Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:449828..449929TCONS_00002620-exon-sc0000021-1491911889:449828..449929Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:449828..449929TCONS_00002620-exon-sc0000021-1510915933:449828..449929Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:449828..449929TCONS_00002620-exon-sc0000021-1575043694:449828..449929Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1491911889:450122..450502TCONS_00002620-exon-sc0000021-1491911889:450122..450502Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1510915933:450122..450502TCONS_00002620-exon-sc0000021-1510915933:450122..450502Clytia hemisphaericaexon
TCONS_00002620-exon-sc0000021-1575043694:450122..450502TCONS_00002620-exon-sc0000021-1575043694:450122..450502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:446379..450502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.96786e-08	0.00642958	5.5782e-10	0	0.890229	0	0	0.494975	0.194261	0	1.00409	0.283503	0	0	0.161823	0.399454	1.40263	0.472893	0.314722	0	0	0	3.7432e-08	0.122262	0	1.08308	0.439567	1.12974	0.0925778	1.37715e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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