TCONS_00015327-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015327-protein
Unique NameTCONS_00015327-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length897

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015327-protein ID=TCONS_00015327-protein|Name=TCONS_00015327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=897bp
MTNCCSSLWRGWVRICSAINGFFERSFVKWSGIVFDHPWKVILSGLLIAL
GLMAGFARFNPQTQTERLFFPEHSRSRDDLERAEKTFPSKFKPDQFFITM
ADGVSSVLNSKALKLGLKYHNRIMNETGIEQICLESNKSLTGVPCVFLDP
LFVFSYNESSITDASIQPILTNALRNRKIIFPNGITAERNFPSIFGRYEY
DNITQRISATALRFMYFNKFPETDSTHKLTSDIQKKMIDILLDAGVPEAE
RNGMKLYLLTGRSTDDGISESSGGDISLVAVSITLMCTFATVVLFRLRNR
VNGHVTVGFAGIGCIALGIGSGFGMVMLSGQYFVAFVGTLPFLVLGVGID
DMFIILDALDSLPSDFTGKNRLQKTMAKVGASVTMTTVTDVIAFAISSST
DFPAIRYFCMYALTSILFAYLLIMTVFLAALALDIKRIEVGNWDWFCCKK
QKDNNPWSEEDMNTLSKTVMKKWAEFLMKTPVRIVVVFLSLVLLAAGIYG
TTQLAEKFDIRQLAPDGSYFIDYLDNERMHYPVGFQVSIINDDENFDYTN
PRLQGEYNYLSNICKENSYMKKTTVNWLQAFLESNEYKSNPNMTFYQRLG
LFLKEFPEYGRDIKWHTENEQRIRASKIQCQDLDTDSWDFRKKAMLSLRD
EFDSKSNISNSTFPISFNYFYREQMVSVPSETMMNLVLCAIAILIITTPY
LVHPLVILMVFGGFVALVFELFGLMVIWDVALNSISMITSIMAIGFAVDY
SAHVAHAYLLVEGDTPEQRMINAISSIGASVFMGGFTTFLGILVLIFGQS
EIFRIFFKMVFGIVVLGLLNGLLFLPVYLSLFVRNKVDIRHTSNYNQDER
LPPSGGEKRPSKKMKEMNNKVGDDVIENPHSPEFKPVNGSIKSNDLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008575XLOC_008575Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015327TCONS_00015327Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003392Ptc/Disp
IPR000731SSD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003392Protein patched/dispatchedPFAMPF02460Patchedcoord: 67..833
e-value: 5.5E-102
score: 342.2
NoneNo IPR availableGENE3D1.20.1640.10coord: 620..836
e-value: 1.8E-28
score: 98.8
NoneNo IPR availableGENE3D1.20.1640.10coord: 218..443
e-value: 5.7E-30
score: 103.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 844..897
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 276..433
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 663..834
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 275..433
score: 33.345

Blast
[Close]
BLAST of TCONS_00015327-protein vs. Swiss-Prot (Human)
Match: PTHD3 (Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.388e-29
Identity = 126/461 (27.33%), Postives = 207/461 (44.90%), Query Frame = 0 
Query:  207 ISATALRFMYFNKFPETDSTHKLTSDIQ-KKMIDILLDAGVPEAERNGMK---LYLLTGRSTDDGISESSGGDISLVAVSITLMCTFATVVLFRLRNRVNGHVTVGFAGIGCIALGIGSGFGMVMLSGQYFVAFVGTLPFLVLGVGIDDMFIILDALDSLPSDFTGKNRLQKTMAKVGASVTMTTVTDVIAFAISSSTDFPAIRYFCMYALTSILFAYLLIMTVFLAALALDIKR-------IEVGNWDW-----FCCKKQKDNNPWSEEDMNTLSKTVMKKWAEFLMKTPVRIVVVFLSLVLLAAGIYGTTQLAEKFDIRQLAPDGSYFIDYLDNERMHYP-VGFQVSIINDDENFDYTNPRLQGEYNYLSNICKENSYMKKT-TVNWLQA---FLESNEYKSNPNMTFYQRLGLFLKEFPEYGRDIKWHTENEQRIRASKIQCQDLDTDSWDFRKKAML 646
            + A A+R +Y+ K      T     D+Q K+ +  LLD          +K   +   T  S       +S   I +  ++  L+  FA    FR     N      F  I    L + SGFG+++  G  FV  V   PFL+LGVG+DDMFI++ A          + R+    +K   S+T+TT+T+++A      + F +++ FC+Y   ++LF Y   +T F A +ALD KR       ++  +  W     FCC            D++ +S      +  FL ++  +  VVF+ ++ + + IYG   + E  D+R LA D SY   Y + E  ++   G +V +I   +  DY +  ++ +    + I ++N Y+ K  T  WL A   +L+ N    N   TF   +  FL  FP +  DI   + NE       IQ  D+ + +   +KK +L
Sbjct:  317 LRAKAMRLLYYLK------TEDPEYDVQSKQWLTHLLDQFTNIKNILALKKIEVVHFTSLSRQLEFEATSVTVIPVFHLAYILIILFAVTSCFRFDCIRNKMCVAAFGVISAF-LAVVSGFGLLLHIGVPFVIIVANSPFLILGVGVDDMFIMISAWHKTNLADDIRERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISLFFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIV-TKKVDYWDKDVRQKLENCTKIFEKNVYVDKNLTEFWLDAYVQYLKGNSQDPNEKNTFMNNIPDFLSNFPNFQHDINISSSNEIISSRGFIQTTDVSSSA---KKKILL 766
The following BLAST results are available for this feature:
BLAST of TCONS_00015327-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTHD31.388e-2927.33Patched domain-containing protein 3 OS=Homo sapien... [more]
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