TCONS_00012687-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00012687-protein
Unique Name	TCONS_00012687-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	332

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00012687-protein ID=TCONS_00012687-protein|Name=TCONS_00012687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MDNDGDQRISFDEFCTFFGDVPSPNMQFIANLWSTGEGLDFGSDVVPISI
PPAEMPLYQFMIAGGVAGIASRTLTAPLEKLKIIAQTSSNQTTKLSQTFT
HIYRHEGMRGFFAGNFANCVRVFPTSALVCLVYSRMIKYTPVDNTKNPNQ
PLWRFVSGVTAGIVSTAATHPLDVVRARLTIQDRTSANTYTGILNAFKRI
TAEEGYQGLYKGLRPSLVSIAPFLGLQQCSYDVLKLYAVKRYSESHTTFL
MCGAFAGMFAQTVVHPLDVIRRRIQVERASSPQHFVSALRDLWNTGGYRG
IYAGLSASYLKVIPAAASSLLVRDFLLGRIQG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007127	XLOC_007127	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00012687	TCONS_00012687	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002067	Mit_carrier
IPR023395	Mt_carrier_dom
IPR018108	Mitochondrial_sb/sol_carrier
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002067	Mitochondrial carrier protein	PRINTS	PR00926	MITOCARRIER	coord: 210..228 score: 30.28 coord: 253..275 score: 32.93 coord: 73..87 score: 41.53 coord: 60..73 score: 40.16 coord: 164..182 score: 35.98 coord: 114..134 score: 44.11
IPR023395	Mitochondrial carrier domain	GENE3D	1.50.40.10		coord: 52..327 e-value: 9.2E-72 score: 240.7
IPR023395	Mitochondrial carrier domain	SUPERFAMILY	103506	Mitochondrial carrier	coord: 55..326
IPR018108	Mitochondrial substrate/solute carrier	PFAM	PF00153	Mito_carr	coord: 250..326 e-value: 1.5E-16 score: 60.0 coord: 56..139 e-value: 3.3E-17 score: 62.1 coord: 152..240 e-value: 7.9E-21 score: 73.7
IPR018108	Mitochondrial substrate/solute carrier	PROSITE	PS50920	SOLCAR	coord: 244..329 score: 15.562
IPR018108	Mitochondrial substrate/solute carrier	PROSITE	PS50920	SOLCAR	coord: 149..237 score: 24.53
IPR018108	Mitochondrial substrate/solute carrier	PROSITE	PS50920	SOLCAR	coord: 55..139 score: 15.133
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 2..14
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 1..24 score: 10.524

Blast

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BLAST of TCONS_00012687-protein vs. Swiss-Prot (Human)
Match: SCMC1 (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 6.806e-44
Identity = 96/336 (28.57%), Postives = 169/336 (50.30%), Query Frame = 0

Query:    1 MDNDGDQRISFDEFCTFFGDVPSPNMQFIANLWSTGEGLDFGSDV-VPISIPPAEMPLYQF---MIAGGVAGIASRTLTAPLEKLKIIAQTSSNQTTKLS--QTFTHIYRHEGMRGFFAGNFANCVRVFPTSALVCLVYSRMIKYTPVDNTKNPNQPLWRFVSGVTAGIVSTAATHPLDVVRARLTIQDRTSANTYTGILNAFKRITAEEGYQGLYKGLRPSLVSIAPFLGLQQCSYDVLKLYAVKRYSESHTT-----FLMCGAFAGMFAQTVVHPLDVIRRRIQVER--ASSPQ-HFVSALRDLWNTGGYRGIYAGLSASYLKVIPAAASSLLV 322
            +D DG   + ++E+  +F   P  +++ I   W    G+D G  + +P      E    Q+   ++AGG+AG  SRT TAPL++LKI+ Q   +++ K++    F  + +  G+R  + GN  N +++ P +A+    Y +  K    +  K       RF+SG  AG  +    +P++V++ RL +        Y+GI +  K+I   EG    YKG  P+L+ I P+ G+    Y++LK Y +  +++          L CGA +    Q   +PL ++R R+Q +     SPQ + V   R + +  G  G+Y G++ +++KV+PA   S +V
Sbjct:  134 IDVDGTMTVDWNEWRDYFLFNPVTDIEEIIRFWKHSTGIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGSKSDKMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGT--FERFISGSMAGATAQTFIYPMEVMKTRLAV---GKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLNMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVV 464

HSP 2 Score: 78.5666 bits (192), Expect = 4.276e-16
Identity = 45/181 (24.86%), Postives = 88/181 (48.62%), Query Frame = 0

Query:   58 YQFMIAGGVAGIASRTLTAPLEKLKI-IAQTSSNQTTKLSQTFTHIYRHEGMRGFFAGNFANCVRVFPTSALVCLVYSRMIKYTPVDNTKNPNQP--LWRFVSGVTAGIVSTAATHPLDVVRARLTIQDRTSANTYTGILNAFKRITAEEGYQGLYKGLRPSLVSIAPFLGLQQCSYDVLK 235
            ++  I+G +AG  ++T   P+E +K  +A   + Q + +      I +HEG+  F+ G   N + + P + +   VY  +  Y   +  K+   P  +     G  +      A++PL +VR R+  Q     +    ++  F+RI ++EG  GLY+G+ P+ + + P +G+    Y+ +K
Sbjct:  289 FERFISGSMAGATAQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLNMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMK 469

The following BLAST results are available for this feature:

BLAST of TCONS_00012687-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00012687-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCMC1	6.806e-44	28.57	Calcium-binding mitochondrial carrier protein SCaM...	[more]

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TCONS_00012687-protein (polypeptide) - C. hemisphaerica