TCONS_00011262-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011262-protein
Unique NameTCONS_00011262-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011262-protein ID=TCONS_00011262-protein|Name=TCONS_00011262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp
MGTDVGAWISCAKAAEIGWVPLANGSPHNIPNIKKLKEPILKVTINVSGR
RYQTYHHTLDRYKDTLLGSAERDFFYDKTLQEYYFDRDPDLFRYILNYYR
TGKLHFPRNECAGSFEQELEFFGIKSGFVAHCCWDDFDDRKKELEERLAD
MDLVSDTESEIDEEEAESEKQKMNIREKLWMWFENPHTTLISKIFYYVTG
FFIAVSVLSTIVETIECDGETCGKRYSKIFFSIEASCVIVFTIEYLLRFF
AAPDRSKYARSVLSIIDIVAILPFYISLFMANHSISGAFVTLRVFRVFRI
FKFSRHSKGLRILGITLKSCASELGFLLFSLSMAIIIFATIVYYVEKDEK
ETKFNSIPAAFWYTIVTMTTLGYGDMVPSTIPGKLVGSVCSLSGVLVIAL
PVPVIVSNFSRIYLQSQKADKRRLHKKMRTKEKEPDEESCGIQEGNPMDN
AKSYSQSNGGLEIRKISTSSATKLIRKFSINSSHNSEKEFYNKVETNNLD
SPSEPHFYPNKKRPVEDSTSISPSPSRQTVIKNMERPRSQSENSTVNSSN
RNSVYGAPHMLKDTKKRNASLDENNSLGTKYKGDHVQQPTIVIDSPTESF
KPFDWRDKNGRTGVPFLNTCSVSTGYHSGGSEISMEQHKIDAEDQV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006313XLOC_006313Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011262TCONS_00011262Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003975K_chnl_volt-dep_Kv4
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableCOILSCoilCoilcoord: 414..434
NoneNo IPR availableGENE3D1.20.120.350coord: 189..321
e-value: 2.2E-29
score: 101.4
NoneNo IPR availableGENE3D1.10.287.70coord: 322..373
e-value: 3.4E-17
score: 61.8
NoneNo IPR availableGENE3D1.20.5.110coord: 375..411
e-value: 2.0E-13
score: 49.2
NoneNo IPR availableGENE3D3.30.710.10coord: 40..138
e-value: 9.0E-28
score: 95.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..646
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 423..457
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 191..411
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 82..101
score: 58.4
coord: 294..320
score: 63.65
coord: 186..214
score: 29.43
coord: 323..346
score: 49.27
coord: 232..255
score: 45.23
coord: 258..278
score: 49.19
coord: 383..409
score: 71.44
coord: 354..376
score: 71.09
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 82..92
score: 61.82
coord: 394..405
score: 85.9
coord: 323..337
score: 54.33
coord: 299..307
score: 78.98
IPR003975Potassium channel, voltage dependent, Kv4PRINTSPR01497SHALCHANNELcoord: 68..81
score: 42.86
coord: 188..202
score: 60.0
coord: 318..337
score: 94.77
coord: 415..426
score: 65.15
coord: 169..183
score: 23.33
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 41..140
e-value: 7.9E-9
score: 45.3
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 193..416
e-value: 4.7E-43
score: 147.1
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 43..132
e-value: 6.6E-27
score: 93.6
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 43..144

Blast
[Close]
BLAST of TCONS_00011262-protein vs. Swiss-Prot (Human)
Match: KCND2 (Potassium voltage-gated channel subfamily D member 2 OS=Homo sapiens GN=KCND2 PE=1 SV=2)

HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0
Identity = 262/437 (59.95%), Postives = 331/437 (75.74%), Query Frame = 0 
Query:    1 MGTDVGAWISCAKAAEIGWVPLANGSPHNIPNIKKLKEPILKVTINVSGRRYQTYHHTLDRYKDTLLGSAERDFFYDKTLQEYYFDRDPDLFRYILNYYRTGKLHFPRNECAGSFEQELEFFGIKSGFVAHCCWDDFDDRKKELEERLADMDLVSDTESEIDEEEAESEKQKMNIREKLWMWFENPHTTLISKIFYYVTGFFIAVSVLSTIVETIECDGET-------CGKRYSKIFFSIEASCVIVFTIEYLLRFFAAPDRSKYARSVLSIIDIVAILPFYISLFMA-NHSISGAFVTLRVFRVFRIFKFSRHSKGLRILGITLKSCASELGFLLFSLSMAIIIFATIVYYVEKDEKETKFNSIPAAFWYTIVTMTTLGYGDMVPSTIPGKLVGSVCSLSGVLVIALPVPVIVSNFSRIYLQSQKADKRRLHKKMR 429
            M   V AW+  A+AA IGW+P+A+G     P  ++ +     + +NVSG R+QT+  TL+RY DTLLGS+ERDFFY    Q+Y+FDRDPD+FR+ILN+YRTGKLH+PR+EC  ++++EL FFG+    +  CC++++ DR++E  ERL D D  +DT         ES    M  R+++W  FENPHT+ ++ +FYYVTGFFIAVSV++ +VET+ C           CG+RY+  FF ++ +CV++FT+EYLLR  AAP R ++ RSV+SIID+VAILP+YI L M  N  +SGAFVTLRVFRVFRIFKFSRHS+GLRILG TLKSCASELGFLLFSL+MAIIIFAT+++Y EK    +KF SIPAAFWYTIVTMTTLGYGDMVP TI GK+ GS+CSLSGVLVIALPVPVIVSNFSRIY Q+Q+ADKRR  KK R
Sbjct:    1 MAAGVAAWLPFARAAAIGWMPVASGPMPAPPRQERKRTQDALIVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERLQD-DADTDTA-------GESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVETVPCGSSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFVRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKAR 429
The following BLAST results are available for this feature:
BLAST of TCONS_00011262-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCND20.000e+059.95Potassium voltage-gated channel subfamily D member... [more]
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