TCONS_00010962-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00010962-protein
Unique NameTCONS_00010962-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00010962-protein ID=TCONS_00010962-protein|Name=TCONS_00010962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp
MENLKDHLGQSLEDLKHKKTEQKGFYIPRRYIMAVLLFSICMLMNCQRSC
LSVAIVAMSSTTKFWDGDQWVDQEAEFDWDSEKKGMLLGAFFYGYFFTQI
PTGYLCMKFGGKNVLLFSMASASVIHVLIPFIVRFSDSLFFASRVLQGLL
LGFVLPGNHFMWGKWAPMKEKASLVSISVSGLSSGMLTAYPISGILSQYG
FAGGWPSVFYVVGAGGFLWCFAWYILAAESPLEHKTISKQELALMDQLSQ
YSSEDDVIPWCSILKNKAVFAVIIANFTFDFSYYTLLITMPLFLRDVHNY
AVATTGMLSALPWFCMTVMITLCGYVSDKLRRHLNVGLIRKLFFNSGSIL
SGVLLVISGYIVSSSGTVAVMCLSVAFFGFAFSGFMVNAMDVSPKYGSTI
IGISNSLASVTGFIGPGMVGVITKEGTNDEWIVIFYILATVSITGGILFA
ILGSGEAQPFVEEVGDDCDAEYERIEKGGEDERTSPPNDEVKNDEIEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006162XLOC_006162Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00010962TCONS_00010962Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 38..416
e-value: 1.2E-47
score: 162.4
NoneNo IPR availableGENE3D1.20.1250.20coord: 254..457
e-value: 1.0E-25
score: 89.7
NoneNo IPR availableGENE3D1.20.1250.20coord: 28..244
e-value: 7.1E-25
score: 87.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 474..498
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 33..457
score: 20.182
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 35..452
e-value: 4.60407E-32
score: 123.963
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 19..454

Blast
[Close]
BLAST of TCONS_00010962-protein vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 3.805e-98
Identity = 165/454 (36.34%), Postives = 260/454 (57.27%), Query Frame = 0 
Query:   25 FYIPRRYIMAV---LLFSICMLMNCQRSCLSVAIVAMSSTTKFWDGDQWVDQEAEFDWDSEKKGMLLGAFFYGYFFTQIPTGYLCMKFGGKNVLLFSMASASVIHVLIPFIVRFSDSLFFASRVLQGLLLGFVLPGNHFMWGKWAPMKEKASLVSISVSGLSSGMLTAYPISGILSQYGFAGGWPSVFYVVGAGGFLWCFAWYILAAESPLEHKTISKQE-----------LALMDQLSQYSSEDDVIPWCSILKNKAVFAVIIANFTFDFSYYTLLITMPLFLRDVHNYAVATTGMLSALPWFCMTVMITLCGYVSDKL--RRHLNVGLIRKLFFNSGSILSGVLLVISGYIVSSSGTVAVMCLSVAFFGFAFSGFMVNAMDVSPKYGSTIIGISNSLASVTGFIGPGMVGVITKEGTNDEWIVIFYILATVSITGGILFAILGSGEAQPFVE 462
            F +PRRYI+A+   L F I   + C    L VAIV+M + +    G   V Q+A+F WD E  G++ G+FF+GY  TQIP G++C KF    V  F++ + S +++LIP   R         R+LQGL+ G   P  H +W KWAP  E++ L + +  G  +G + A P++G+L QY    GW SVFYV G+ G  W   W +++ ESP  H +IS++E             LM+ L+++S+     PW     +  V+A+I+ANF   +++Y LLI+ P +  +V  + ++  G++SALP   MT+++ + G ++D L  RR ++   +RKL    G  +   LL++ GY  S    ++ + L+V F GFA SGF VN +D++P+Y S ++GISN + +++G + P +VG +TK  T +EW  +F I + V   G I + +  SGE QP+ E
Sbjct:   57 FGLPRRYIIAIMSGLGFCISFGIRCN---LGVAIVSMVNNSTTHRGGHVVVQKAQFSWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQY---SGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESAKLMNPLTKFST-----PWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAE 499
The following BLAST results are available for this feature:
BLAST of TCONS_00010962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU13.805e-9836.34Vesicular glutamate transporter 1 OS=Homo sapiens ... [more]
back to top