TCONS_00008985-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008985-protein
Unique NameTCONS_00008985-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008985-protein ID=TCONS_00008985-protein|Name=TCONS_00008985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MAPAKFGDLGKEAKDLINKNFHFGLIKFEGKTKTKNGVEFTTEGSHYTDT
GNVNGSLETKFKNADYGVTFTEKWTTENIISTNISIDDKIAKGLKVDFDT
TFAPITGKKTAKVKTAYKHENVHATGDVDLNFAGPSINGSAVFAYKGWHA
GYQASYDTGSAKLTANNASLTYKDGDFVVHSAINDGSKYVGSIHHQVKPE
LSAAAMLQWASGSKDPASLTVCGRYDIDGETFMKAKLDNQLHLGISYVQN
LRPGVQLTMSSLINAKSLENGGHKLGLSLNLSA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005032XLOC_005032Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008985TCONS_00008985Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001925Porin_Euk
IPR027246Porin_Euk/Tom40
Vocabulary: Molecular Function
TermDefinition
GO:0008308voltage-gated anion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0005741mitochondrial outer membrane
Vocabulary: Biological Process
TermDefinition
GO:0098656anion transmembrane transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098656 anion transmembrane transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005741 mitochondrial outer membrane
molecular_function GO:0008308 voltage-gated anion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001925Porin, eukaryotic typePRINTSPR00185EUKARYTPORINcoord: 4..19
score: 48.08
coord: 146..157
score: 53.21
coord: 247..264
score: 52.99
coord: 67..82
score: 57.21
IPR027246Eukaryotic porin/Tom40PFAMPF01459Porin_3coord: 2..276
e-value: 3.1E-68
score: 230.1
NoneNo IPR availableGENE3D2.40.160.10coord: 1..283
e-value: 4.1E-67
score: 226.0
NoneNo IPR availableCDDcd07306Porin3_VDACcoord: 3..282
e-value: 4.38579E-107
score: 313.761

Blast
[Close]
BLAST of TCONS_00008985-protein vs. Swiss-Prot (Human)
Match: VDAC2 (Voltage-dependent anion-selective channel protein 2 OS=Homo sapiens GN=VDAC2 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 7.385e-103
Identity = 139/281 (49.47%), Postives = 204/281 (72.60%), Query Frame = 0 
Query:    3 PAKFGDLGKEAKDLINKNFHFGLIKFEGKTKTKNGVEFTTEGSHYTDTGNVNGSLETKFKNADYGVTFTEKWTTENIISTNISIDDKIAKGLKVDFDTTFAPITGKKTAKVKTAYKHENVHATGDVDLNFAGPSINGSAVFAYKGWHAGYQASYDTGSAKLTANNASLTYKDGDFVVHSAINDGSKYVGSIHHQVKPELSAAAMLQWASGSKDPASLTVCGRYDIDGETFMKAKLDNQLHLGISYVQNLRPGVQLTMSSLINAKSLENGGHKLGLSLNLSA 283
            P  + DLGK A+D+ NK F FGL+K + KTK+ +GVEF+T GS  TDTG V G+LETK+K  +YG+TFTEKW T+N + T I+I+D+I +GLK+ FDTTF+P TGKK+ K+K++YK E ++   DVD +FAGP+I+GSAVF Y+GW AGYQ ++D+  +KLT NN ++ Y+ GDF +H+ +NDG+++ GSI+ +V  +L  +  L W SG+ +     +  +Y +D    + AK++N   +G+ Y Q LRPGV+LT+S+L++ KS+  GGHK+GL+L L A
Sbjct:   15 PPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLETKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGT-NCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294
The following BLAST results are available for this feature:
BLAST of TCONS_00008985-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VDAC27.385e-10349.47Voltage-dependent anion-selective channel protein ... [more]
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