TCONS_00007477-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007477-protein
Unique Name	TCONS_00007477-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	773

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007477-protein ID=TCONS_00007477-protein|Name=TCONS_00007477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=773bp
MAVDPRFERLPEHEGPAFRTWQLIMQTTMGSVVQQQATGGHIQLSNVPKP
RSKPAPADDFIPLGSSKKENQIEENDEAPKIKKEKQAPKEAVADELFIPW
KTHDHYPEDPVGLHLEISDFHKYMKPTIEEEKMRQNVVDRISALIVHIWP
SAKVEVFGSFRTKLYLPTSDIDLAVFGKWEKLPLNTLKKELVNHGFADEE
TIKVLDKASVPIIKLTDKKSKIRVDISFNVESSIKSAELIKKYIEEFRIL
PSLFLIIKHFLVQRDLNEVFTGGISSYCLMLLTISFLQRHRKVDVRKTKN
VNLGVLLMEFLELYGRNFNYQRIAVKIKDDGCYANKEMLAKELGEGTFLP
LLCIEDPITHSCEIGKSSYGILRVKDAFEYGFNIIDRAIRNKSYFKVNPN
STYLSRIVSVAREVEEYRQWIRTSYKSFDFVPKTPVYIPSTPVTPQSIYP
IAIPNQFISTSNGRPPLLPTPPSPFSPRVNMITSPFSTYPPSTTYGFFGD
SNTVQQTIIIPTAGSTGNSDTTDLNQQQIPNLQQSQKLNQQPSQQNPEIV
TTPPPPVTQQIHYVVPANNGAYIQQTRPLTQQSFVSPSPSPSSPIKTMPP
NLAFGSLITSMAQQRRNNSKANTNYTNKRNTNSARNSQRNSPKTSPKLTN
RSFSVPNAVPGIAAVSVPQTTTDYSKQISRITGTESRIHYTADELRSLNP
GTTMVSNGNGKRKTEKEYRVPVERFDSSKFINKDSSIHKYVAPVPLKSSP
VASHMKRRDSLKDSAIVISSDGE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004216	XLOC_004216	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007477	TCONS_00007477	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002934	Polymerase_NTP_transf_dom
IPR002058	PAP_assoc

Vocabulary: **Molecular Function**
Term	Definition
GO:0016779	nucleotidyltransferase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016779	nucleotidyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002934	Polymerase, nucleotidyl transferase domain	PFAM	PF01909	NTP_transf_2	coord: 147..248 e-value: 2.7E-12 score: 46.7
None	No IPR available	GENE3D	1.10.1410.10		coord: 207..397 e-value: 1.7E-41 score: 141.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 535..557
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 749..773
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 581..655
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..86
None	No IPR available	CDD	cd05402	NT_PAP_TUTase	coord: 133..244 e-value: 1.08814E-33 score: 124.977
None	No IPR available	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 107..245
None	No IPR available	SUPERFAMILY	81631	PAP/OAS1 substrate-binding domain	coord: 251..390
IPR002058	PAP/25A-associated	PFAM	PF03828	PAP_assoc	coord: 302..361 e-value: 1.3E-12 score: 47.6

Blast

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BLAST of TCONS_00007477-protein vs. Swiss-Prot (Human)
Match: PAPD5 (Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2)

HSP 1 Score: 350.903 bits (899), Expect = 1.094e-111
Identity = 169/328 (51.52%), Postives = 232/328 (70.73%), Query Frame = 0

Query:   99 PWKTHDHYPEDPVGLHLEISDFHKYMKPTIEEEKMRQNVVDRISALIVHIWPSAKVEVFGSFRTKLYLPTSDIDLAVFGKWEKLPLNTLKKELVNHGFADEETIKVLDKASVPIIKLTDKKSKIRVDISFNVESSIKSAELIKKYIEEFRILPSLFLIIKHFLVQRDLNEVFTGGISSYCLMLLTISFLQRHRKVDVRKTKNVNLGVLLMEFLELYGRNFNYQRIAVKIKDDGCYANKEMLAKELGEGTFLPLLCIEDPITHSCEIGKSSYGILRVKDAFEYGFNIIDRAIR-NKSYFKVNPNSTYLSRIVSVAREVEEYRQWIRTSY 425
            PWK  + Y +  VGLH EISDF++YM P  EEEKMR  VV+RI ++I  +WPSA V++FGSF+T LYLPTSDIDL VFGKWE LPL TL++ L  H  ADE+++KVLDKA+VPIIKLTD  ++++VDISFNV++ +++A+LIK + +++ +LP L L++K FL+QRDLNEVFTGGI SY L L+ +SFLQ H + D     N N GVLL+EF ELYGR+FNY +  ++IKD G Y  K+ + K + +G    +L IEDP+    ++G+SSYG ++VK AF+Y + ++  A+     Y+  N   + L RI+ V  EV  YR WI   +
Sbjct:  107 PWKRRN-YNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDA-CIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISKQW 432

The following BLAST results are available for this feature:

BLAST of TCONS_00007477-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007477-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
PAPD5	1.094e-111	51.52	Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo...	[more]

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TCONS_00007477-protein (polypeptide) - C. hemisphaerica

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