TCONS_00004529-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004529-protein
Unique NameTCONS_00004529-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004529-protein ID=TCONS_00004529-protein|Name=TCONS_00004529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MGWKKKAGILFLPLAIYYGCKLVKDYFIVFALIFNFLTTTFFPNLNLECF
KDFNPDIADFATGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLL
EAGGGETIHTEVAGFQYTAIRLGASWDYMTEKHEDGITSTNQKNGQVYWP
RGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQ
RTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKILSYNPDYNGEK
QTGCFFHQLTRRDGLRCSTAKAYLKPKRSNLHVSPFSHVQKILIDPETKT
AKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGI
PIIKELQVGYNLQDHVNYIDYLFFNDSVSFRYEDYLSYDALQKLLNERKG
YLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADE
YWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDH
PEDLREFVEGMKFTKKLAAAMKHLNASTYRGKEPGCEQHELDSDDYLRCI
VRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTI
VSGNTNAPTIMIAEKAADIIKEDWKDKKSYLE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002548XLOC_002548Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004529TCONS_00004529Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007867GMC_OxRtase_C
IPR012132GMC_OxRdtase
IPR000172GMC_OxRdtase_N
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.560.10coord: 175..579
e-value: 3.1E-100
score: 335.2
NoneNo IPR availableGENE3D4.10.450.10coord: 105..174
e-value: 1.5E-20
score: 72.1
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 361..564
IPR007867Glucose-methanol-choline oxidoreductase, C-terminalPFAMPF05199GMC_oxred_Ccoord: 474..616
e-value: 3.3E-45
score: 154.0
IPR012132Glucose-methanol-choline oxidoreductasePIRSFPIRSF000137Alcohol_oxidasecoord: 51..631
e-value: 3.9E-155
score: 516.0
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 71..366
e-value: 5.2E-74
score: 249.2
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 152..175
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 326..340
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 563..625
coord: 69..359

Blast
[Close]
BLAST of TCONS_00004529-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.779e-99
Identity = 221/588 (37.59%), Postives = 311/588 (52.89%), Query Frame = 0 
Query:   60 FATGDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGGGETIHTEVAGFQYTA--IRLGAS-----------WDYMTEKHEDGITSTNQKNGQV-YWPRGKILGGSSSINALIYTRGNKRDYDSWKEQGNPGWSYEDVLQYFKKSEDQRTENLVDSKFHSTGGPLPVEQAVVDLPMIQDCINACSKI-LSYNPDYNGEKQTGCFFHQLTRRDGLRCSTAKAYLKP--KRSNLHVSPFSHVQKILIDPETKTAKGVLYKKNGKSMTVKARKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVN-YIDY-----LFFNDSVSFRYEDYLSYDALQKLLNERKGYLTQTLPIGTFIPLTKESEEKDWPEIQMHYITGLIANFYDFNPFFNIADEYWAYMKSQMSDKVGMTLMYCLLRPRSRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLRCIVRRGATTVYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADIIK 621
             A+   +  DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG  + +    AG +  +  I + A+           W Y TE  + G+      +G+V YWPRG++ GGSSS+NA++Y RG+  DY+ W+ QG  GW Y   L YF+K++      L  S++    GPL V +   + P+    + A  +       D NG +Q G  +  +T  +G R S A AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA+ SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+  YI       +  + +     +  +  + L K   E     T  L  G FI   +       P+IQ H+   L +   D        + Y  ++                +R  S G +KLRS N +DHP+I PNY     D+ +F   +K T+++ A       + +RGKE  PG     + SD  +   VR  A + YHP  TCKMG  +D  AVVD   +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVL----AGSKRLSWKIHMPAALVANLCDDRYNWCYHTEV-QRGL------DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGA---TAHLETGGFI---RSQPGVPHPDIQFHF---LPSQVIDHGRVPTQQEAYQVHVGP--------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEA---LAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00004529-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH1.779e-9937.59Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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