Forkhead box protein (polypeptide) - C. hemisphaerica

Overview
NameForkhead box protein
Unique NameTCONS_00003898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003898-protein ID=TCONS_00003898-protein|Name=Forkhead box protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MPMLIPNHQSISKSIESISKNGIDIDAVVRNSLSKLSKSHSQCGYAKPSE
ELLKRETKPKVQSVSPCDKTRPNKVMPLTPRNKNSSDSNNANKKQSKVSS
LRAKIQQQKLAAEGLSKNIKKENRTESNEELDDSLTSLQWLTGVKVNDLM
EGKPISYAPLSPAPSNCSDEGEEQKFGRGYRYHSDSVVDYRTNSRIKPPY
SYAALIIMAMKSKSCSKMTLSEIYKWITDNFVFYKHAEPSWQNSIRHNLS
LNKCFAKIPRNKGDPGKGGYWSIVPEYADKLLESNIRKRRSSMMDYGCQE
YIKRQRLDLFESQLLLKIKEGLRSPTNENVFLDTNNNNDTNNSKHSDDHN
KTLYRNIYKHASSSSTSPMFPQQHATATPADAEQCRMDHPYGKNPFSRFI
SDEDNIKALADSLQRSSNSFTDPTSTSCSNFDLSSSMLLNTFANAIRTDC
SWSAEXCY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002186XLOC_002186Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003898TCONS_00003898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR018122TF_fork_head_CS_1
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..125
NoneNo IPR availableCDDcd00059FHcoord: 197..273
e-value: 4.15393E-41
score: 141.152
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 218..235
score: 48.81
coord: 241..258
score: 77.12
coord: 197..210
score: 67.46
IPR001766Fork head domainSMARTSM00339forkneu4coord: 195..286
e-value: 3.0E-44
score: 163.0
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 197..281
e-value: 1.0E-35
score: 121.8
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 197..292
score: 34.152
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 183..284
e-value: 7.8E-35
score: 118.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 196..290
IPR018122Fork head domain conserved site1PROSITEPS00657FORK_HEAD_1coord: 197..210
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 241..247

Blast
[Close]
BLAST of Forkhead box protein vs. Swiss-Prot (Human)
Match: FOXJ1 (Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.311e-52
Identity = 94/208 (45.19%), Postives = 122/208 (58.65%), Query Frame = 0 
Query:  109 KLAAEGLSKNIKKENRTESNEELDDSLTSLQWL-----TGVKVNDLMEGK---------PISYAPLSPAPSNCSDEGEEQKFGR------------GYRYHSDSVVDYRTNSRIKPPYSYAALIIMAMKSKSCSKMTLSEIYKWITDNFVFYKHAEPSWQNSIRHNLSLNKCFAKIPRNKGDPGKGGYWSIVPEYADKLLESNIRKRR 290
            +L+  G ++    E   E  + LDDSLTSLQWL        K   L  G          P S AP SP  ++ +  G+    G+            G +      VDY TN  +KPPYSYA LI MAM++   +K+TLS IYKWITDNF +++HA+P+WQNSIRHNLSLNKCF K+PR K +PGKGG+W I P+YA++LL    +KRR
Sbjct:    7 RLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVPGSAAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKATKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRR 214
The following BLAST results are available for this feature:
BLAST of Forkhead box protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXJ12.311e-5245.19Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 P... [more]
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