TCONS_00003296-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003296-protein
Unique NameTCONS_00003296-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003296-protein ID=TCONS_00003296-protein|Name=TCONS_00003296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MALSKPSFTKLSSCLQQLRSSRRFLILLPKENSYTVQKIELCRKSNTITA
RHFTSENRKGPKSSIRLPAIVTKDRLILLGFGVLIVGCLIGWEGYNNQNR
QNTKQMHELHAIVIKAENCVKDQKYEEAIAHYQEARQLVQQVKMSSQTVQ
NKVVLNIVDQLGHLAYELGNWAEAEILLNQTLHIMKQCGTTEEEDVYIEI
VLRLAKIDTVYERKDDAIEKFEFCIANLESKISVVDIYSEECSERITLYG
LVLTEYGTYTREIGLLDESEKAFSKALNICRNVLGPTHEQTSVLANDLAT
VYDEKGRYNKAIRLAEKAIRIASETSPENLATYKYNLGHILLHKGDLKRA
RKALREALQIAEENDDQDTKAIIESSIMKLDLPSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001833XLOC_001833Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003296TCONS_00003296Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013105TPR_2
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..367
NoneNo IPR availablePFAMPF13424TPR_12coord: 254..322
e-value: 6.4E-15
score: 55.1
NoneNo IPR availableGENE3D1.10.150.200coord: 245..300
e-value: 1.5E-8
score: 33.9
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 155..188
e-value: 120.0
score: 5.5
coord: 292..325
e-value: 0.84
score: 18.7
coord: 250..283
e-value: 220.0
score: 3.1
coord: 109..142
e-value: 79.0
score: 7.1
coord: 331..364
e-value: 3.4E-4
score: 29.9
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 250..283
score: 5.723
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 331..364
score: 9.588
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 292..325
score: 8.113
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 99..240
e-value: 1.6E-11
score: 43.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 301..370
e-value: 7.1E-15
score: 54.5
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 160..367
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 99..190
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 332..364
e-value: 1.8E-5
score: 24.4
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 250..364
score: 15.459

Blast
[Close]
BLAST of TCONS_00003296-protein vs. Swiss-Prot (Human)
Match: TTC19 (Tetratricopeptide repeat protein 19, mitochondrial OS=Homo sapiens GN=TTC19 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 1.495e-23
Identity = 70/232 (30.17%), Postives = 117/232 (50.43%), Query Frame = 0 
Query:  142 VKMSSQTVQNKVVLNIVDQLGHLAYELGNWAEAEILLNQTLHIMKQCGTTEEEDVYIEIVLRLAKIDTVYERKDDAIEKFEFCIANLESKIS-----VVDIYS-EECSERITLYGLVLTEYGTYTREIGLLDESEKAFSKALNICRNVLGPTHEQTSVLANDLATVYDEKGRYNKAIRLAEKAIRIASETSPENLATYKYNLGHILLHKGDLKRARKALREALQIAEENDDQ 367
            ++++ QT   K +    D + +LA+  G    AE L   T+  +   G  +E++  IEI L+LA I     R++ A+  +EFCI+ LE KI        DI S EE +    L G+ L     Y        ++++ + KAL I   + G  H QT VL +DLAT  D +GR+++A    ++A  +A + +   L     NL  +L+H+    +A++  +EAL+ A+   D+
Sbjct:  123 LRLAYQTDNKKAITYTYDLMANLAFIRGQLENAEQLFKATMSYLLGGGMKQEDNAIIEISLKLASIYAAQNRQEFAVAGYEFCISTLEEKIEREKELAEDIMSVEEKANTHLLLGMCLDACARYLLFSKQPSQAQRMYEKALQISEEIQGERHPQTIVLMSDLATTLDAQGRFDEAYIYMQRASDLARQINHPELHMVLSNLAAVLMHRERYTQAKEIYQEALKQAKLKKDE 354
The following BLAST results are available for this feature:
BLAST of TCONS_00003296-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC191.495e-2330.17Tetratricopeptide repeat protein 19, mitochondrial... [more]
back to top