TCONS_00003008-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003008-protein
Unique NameTCONS_00003008-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1046

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003008-protein ID=TCONS_00003008-protein|Name=TCONS_00003008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1046bp
MDFDDDMDDLDQILSNLPSEDTINKADDSADELLDILMDEPPPTITKPNI
KSAAKSDVSDESSEDETDELKQAEIAALEAKLALLRSQKSKKKKKSKSDL
SDSPENEKPKLKVKIEAEEKSSLVEEALCSHKKKFSDCFFCDEKQSKSPI
VASTPFKVEQNNEEPSKPNKIESSSKEKESSPKNNGFYGKKERIAHVPKK
AAPPKPVEKEPTAKTNNVKRNDKNLSSGCGYEFVGISIRNPMISSAVLDE
RMKGRRVIKISHIESKMKNYDIEGDWVTMGVLVDKMPQKTTSNGKNFSVW
KLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKEDNS
ISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHV
QKAFKKAKAGRMELQSGGSKGPRNGTTSKNQKGHLMNDMKKSIDMGDYHY
GGKTLSLSENKKRNNVKLQKTSNGAGAGGGGLRSIVSSDVKALAAKDLQE
TKMKREKQKLELQGGTEEFKELLNVPTVGARNLHKLLKGDQVKEEEIKVP
KSKCNSARSFLRNTKQEFLQTNPQLNRNLSPSIPKPDPAQKKRKLCDVEF
FETTTSSDKKDKPKKLSVDKRNESNEREMTFESDEKVKRRKSSTDQTTNN
LTPNGGDKTNNLTLNSGDKATKRTLNGGDKITKSTLNDGDRTTKSTLNGG
DKTTKSTLNGGDKTNKATPNGGDKTERKDEENNNQEPIRKKEKINLNKLI
LDKSKAPMLGRGLRNSKSDFEEDFLCYDKYTGEDTSVSQISYGNDKGLTE
TLERSTNKQKLQQNGPALKPTKAKLAAIQKIRSKGGIHDNEDKKNKQQTS
EHIKARLENSLDKSNDEGAGDENDEVPKKKRKKGLLQDIFGELDPNSEEA
IKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLY
ACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCLL
PKNPCSKCGGTSFERSSMVNERKGPKMGAETLELRGREQKYANSLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001647XLOC_001647Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003008TCONS_00003008Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015411Rep_factor_Mcm10_C
IPR015408Znf_Mcm10/DnaG
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 832..851
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..741
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 805..824
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 857..881
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 411..433
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
IPR015411Replication factor Mcm10, C-terminalSMARTSM01280Mcm10_2coord: 523..1044
e-value: 1.2E-42
score: 157.7
IPR015411Replication factor Mcm10, C-terminalPFAMPF09332Mcm10coord: 816..1044
e-value: 9.9E-52
score: 176.4
IPR015408Zinc finger, Mcm10/DnaG-typePFAMPF09329zf-primasecoord: 365..411
e-value: 3.7E-17
score: 61.7

Blast
BLAST of TCONS_00003008-protein vs. Swiss-Prot (Human)
Match: MCM10 (Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.804e-47
Identity = 128/393 (32.57%), Postives = 201/393 (51.15%), Query Frame = 0
Query:  229 CGYEFVGISIRNPMISSAVLDERMKGRRVIKISHIESKMKNYDIEG-DWVTMGVLVDKMPQKTTSNGKNFSVWKLSDLGMGSENVLMAFFLFGEVNKEHWKTQNGAVIALLNPSITKRKEDN-SISISIDNPKKLMEIGTSRDLATCKGVRKSDGRSCTMFINKQYGDYCEFHVQKAFKKAKAGRMELQSGGSKG------PRNGTTSKNQKGHLMNDMKKSIDMGDYHYGGKTLSLSENKKRNNV----KLQKTSNGAGAGGGGLRSIVSSDVKALAAKDLQETKMKREKQKLELQGGTEEFKELLNVPTVGARNL-HKLLKGDQVKEEEIKVPKSKCNSARSFLRNTKQ---------------EFLQTNPQLNRNLSPSIPKPDPAQKKR 593
            C   F G+ +R P +SS  ++++M GR++I++S I+ KM    +E  DWVT GV++ K+  ++ ++GK FS+WKL+DL   ++ V  + FLFGEV+K  WKT+ G V+ +LN +  K K+ +  + +SID+P+K++ +G + DL TCK  +K +G  CT  +N +  +YC++HVQ  +KK  A R +LQS  S G       R GT+           +K+ +    ++YGG + +         V    K+Q T +     G  L               +QET+ K    +  L   +EEFKEL+++PT GARNL   L K           P  K  SA + L+  KQ                FLQ++ ++     PS  +  PAQ  R
Sbjct:  246 CVEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTFSIWKLNDLRDLTQCV--SLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKA-KKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAKRADLQSTFSGGRIPKKFARRGTS-----------LKERLCQDGFYYGGVSSASYAASIAAAVAPKKKIQTTLSNLVVKGTNL--------------IIQETRQKLGIPQKSL-SCSEEFKELMDLPTCGARNLKQHLAKATASGIMGSPKPAIKSISASALLKQQKQRMLEMRRRKSEEIQKRFLQSSSEVESPAVPSSSRQPPAQPPR 609          

HSP 2 Score: 129.028 bits (323), Expect = 2.446e-30
Identity = 91/226 (40.27%), Postives = 128/226 (56.64%), Query Frame = 0
Query:  828 IQKIRSKGGI----HDNEDKKNKQ--QTSEHIKARLE-NSLDKSNDEGAGDENDEVPKKKRKKGLLQDIFGELDPNSEEAIKLHKAKSKNVGAVRLAEAEREDKYFAALEKKEAMEQKMINTTEIKVRLYACKVCNYKAESLLKKCLDEKHLHVKLPDRIKRFFACKNCKHKAIGYDCLLPKNPCSKCGGTSFERSSMVNERKGPKMGAETLELRGREQ-KYANSL 1045
            I K+R+KG +    + N  KK ++  Q    +K R+E N++  S  E   DE +   KK+R++         L+  SEE  K+ KAKSK+ G ++ AEAE +++YF  L KKE ME+KM N  E+K R+  CK C Y    LL+ C+ E+H      D +KRFF C  C +++I  D  LP   CS CG   +ER  M+ E+ GPK+G ETL  RG E  K+ NSL
Sbjct:  663 ITKLRAKGQVLTKTNPNSIKKKQKDPQDILEVKERVEKNTMFSSQAE---DELEPARKKRREQ------LAYLE--SEEFQKILKAKSKHTGILKEAEAEMQERYFEPLVKKEQMEEKMRNIREVKCRVVTCKTCAYTHFKLLETCVSEQH-EYHWHDGVKRFFKCP-CGNRSISLD-RLPNKHCSNCGLYKWERDGMLKEKTGPKIGGETLLPRGEEHAKFLNSL 874          
The following BLAST results are available for this feature:
BLAST of TCONS_00003008-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCM102.804e-4732.57Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=... [more]
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