TCONS_00002744-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002744-protein
Unique NameTCONS_00002744-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002744-protein ID=TCONS_00002744-protein|Name=TCONS_00002744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
ACYAQGQPEIKDLLDCSLLSITDDECLKIFVHLYGRCFQLGNQLSDIQYV
EGAPPNANPPHCPDFIDRVSWQCIPRSHIDQKRTLNCTRPGFLNPGEKFE
SQCVVDIEKRQLKYDLSDMNDKCKRPEGSDDVIKENQLLFMSEFGLSSKR
LFEYNEDVRWHQDAIEKIHKTFRFLDLFICVAAFIALLVLIPMKNERVML
HRHLLLAFAFNDIIILYMLFNYSSNTNANFFTAMLNRSIQEDNVDCSMVH
VVHYYFFLSQITWMFNELFYQFRQIFNVFTVHKSYIWLYIAAGWGFPYFV
VFGLYLPFNWHNPPVDQFLSCWSYHSTHEYNFIVTGPAIFLLALNVFMMT
YLMWIIWSKLRINPTKEYVNSRKSARSFLVILVLLGGGYLFTIYGPSGCI
EFDYFIILVLPIQGSLIAIFHVFLSREVTDSIKRRFRHWQSDAEFRNSEY
SQGRRISLFGYRRGSRNTSITTLSSFPPSRKTSRKESTISFPSIIESDME
NSTATTVYKNQNATDNSIASRNVAEDGFLPPAPPPILGPMSYIRDRDFDS
TGGFEKVDVNMNRTDSLTTPSGDIDAESKLNTDDLNNNISFQNDAFVQED
ESSVVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001475XLOC_001475Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002744TCONS_00002744Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 374..394
score: 29.06
coord: 199..223
score: 18.85
coord: 286..311
score: 23.34
coord: 403..424
score: 28.27
coord: 248..271
score: 25.56
coord: 332..357
score: 20.21
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 180..416
e-value: 1.7E-28
score: 99.4
NoneNo IPR availableGENE3D1.20.1070.10coord: 159..458
e-value: 3.5E-21
score: 74.9
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 162..425
score: 22.704

Blast
[Close]
BLAST of TCONS_00002744-protein vs. Swiss-Prot (Human)
Match: CRFR1 (Corticotropin-releasing factor receptor 1 OS=Homo sapiens GN=CRHR1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.123e-21
Identity = 63/228 (27.63%), Postives = 109/228 (47.81%), Query Frame = 0 
Query:  227 NANFFTAMLNRS--IQEDNVD-CSMVHVVHYYFFLSQITWMFNELFYQFRQIFNVFTVHKSYIWLYIAAGWGFPYFVVFGLYLPFNWHNPPVDQFLSCWSYHSTHEY-NFIVTGPAIFLLALNVFMMTYLMWIIWSKLRINPTKEYVNSRKSARSFLVILVLLGGGYLFTIYGPS----GCIEFDYFIILVLPIQGSLIAIFHVFLSREVTDSIKRRFRHWQSDAEFR 446
            NA +F   L  S  + + NV  C +V   + YF ++   WMF E  Y    I   ++  +   W++I  GWG P+ ++    +   +++        CW       Y ++I  GP I +L +N   +  ++ I+ +KLR + T E +  RK+ ++ LV+L LLG  Y+     P       + F YF   +   QG  +++F+ FL+ EV  +I++R+  WQ     R
Sbjct:  195 NATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTYSTDRLRKWMFICIGWGVPFPIIVAWAIGKLYYDNE-----KCWFGKRPGVYTDYIYQGPMILVLLINFIFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDEVSRVVFIYFNSFLESFQGFFVSVFYCFLNSEVRSAIRKRWHRWQDKHSIR 417
The following BLAST results are available for this feature:
BLAST of TCONS_00002744-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRFR13.123e-2127.63Corticotropin-releasing factor receptor 1 OS=Homo ... [more]
back to top