TCONS_00001773-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001773-protein
Unique Name	TCONS_00001773-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	314

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001773-protein ID=TCONS_00001773-protein|Name=TCONS_00001773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MAEPPAKKARAAESESCDNLLDGFETVKILMNDVKAKKVHVLGKFKDSDE
NAIVSLSKTPFTEDSVKSILSKETNLKKEFNNDIYGQFIAETSPSLNTLA
TNTIHPATEKHIMKYTSQDIHLVNETAEDYQNITLPYLEKQQFSINWVYN
ILDHEKEADRILYEDPDKENGFIILPDLKWDGKQIEDLYLTGICHARGIK
SIRDLNSSHLPMLKNMLSKGMEVIKKTYNVPSNQIRAYFHYFPSYYHLHV
HFVHLKNDVGGIYVGKAHLVSDVIDNIERFGDDFYAKKTLPVTLREKDTL
LKLLLEVKEEKPSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000950	XLOC_000950	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001773	TCONS_00001773	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011146	HIT-like
IPR008594	DcpS/DCS2
IPR011145	Scavenger_mRNA_decap_enz_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0016787	hydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011146	HIT-like domain	GENE3D	3.30.428.10		coord: 146..245 e-value: 7.0E-11 score: 42.0
IPR011146	HIT-like domain	SUPERFAMILY	54197	HIT-like	coord: 118..305
None	No IPR available	PFAM	PF11969	DcpS_C	coord: 146..259 e-value: 1.0E-32 score: 112.9
None	No IPR available	GENE3D	3.30.2240.10		coord: 246..307 e-value: 6.3E-24 score: 83.7
IPR008594	Scavenger mRNA decapping enzyme DcpS/DCS2	PIRSF	PIRSF028973	DcpS	coord: 6..313 e-value: 5.7E-109 score: 361.6
IPR008594	Scavenger mRNA decapping enzyme DcpS/DCS2	PFAM	PF05652	DcpS	coord: 20..118 e-value: 7.1E-21 score: 74.9
IPR011145	Scavenger mRNA decapping enzyme, N-terminal	SUPERFAMILY	102860	mRNA decapping enzyme DcpS N-terminal domain	coord: 18..118

Blast

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BLAST of TCONS_00001773-protein vs. Swiss-Prot (Human)
Match: DCPS (m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 8.399e-95
Identity = 134/292 (45.89%), Postives = 191/292 (65.41%), Query Frame = 0

Query:   23 GFETVKILMNDVKAKKVHVLGKFKDSD-----ENAIVSLSKTPFTEDSVKSILSKETNLKKEFNNDIYGQFIAETSPSLNTLATNTIHPATEKHIMKYTSQDIHLVNETAEDYQNITLPYLEKQQFSINWVYNILDHEKEADRILYEDPDKENGFIILPDLKWDGKQIEDLYLTGICHARGIKSIRDLNSSHLPMLKNMLSKGMEVIKKTYNVPSNQIRAYFHYFPSYYHLHVHFVHLKNDVGGIYVGKAHLVSDVIDNIERFGDDFYAKKTLPVTLREKDTLLKLLLEVKE 309
            GF   K+L    + K + + GK  ++      E+A+V L KTPF  + V  +L+    L+ +F+NDIY  +       LN + T  ++PATEKH+ KY  QD+ L+ ET +DY+NITLP+LE Q  SI WVYNILD + EADRI++E+PD  +GF+++PDLKW+ +Q++DLYL  ICH RGI+S+RDL   HLP+L+N+L +G E I + Y +  + +R Y HY PSYYHLHVHF  L  +  G  V +AHL+++VI+N+E      Y ++TL   LR  D LLKLL E ++
Sbjct:   46 GFRLQKVLRESARDKIIFLHGKVNEASGDGDGEDAVVILEKTPFQVEQVAQLLTGSPELQLQFSNDIYSTYHLFPPRQLNDVKTTVVYPATEKHLQKYLRQDLRLIRETGDDYRNITLPHLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAEVIENLE-CDPRHYQQRTLTFALRADDPLLKLLQEAQQ 336

The following BLAST results are available for this feature:

BLAST of TCONS_00001773-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001773-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
DCPS	8.399e-95	45.89	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1...	[more]

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TCONS_00001773-protein (polypeptide) - C. hemisphaerica

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