TCONS_00001180-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001180-protein
Unique NameTCONS_00001180-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001180-protein ID=TCONS_00001180-protein|Name=TCONS_00001180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MYDHKKLSNQLETLSNNNMNAKKPIRIVVLGQCGVGKTALVSRCLQNTFP
QDSSSGKDISHRYNMTINKKKTVCLDIVDFNDKNDALISCADAFIICYAI
NDRKSFEAIDAYLDKIVEANIKSPKIGIVGNKIDLYNDREVASTEGLELA
KEINSLFYETSAKVPVIDVRQVFYDLYQSLKNAKRSKKGKRGSIELESSD
VFSLLNYSIINNSGVIGRSSNSSCFSALLSARRKKSPPPLFGRSWSSESV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000641XLOC_000641Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001180TCONS_00001180Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 25..46
score: 37.54
coord: 122..135
score: 41.71
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 22..183
e-value: 3.8E-20
score: 82.9
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 25..183
e-value: 2.8E-10
score: 18.6
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 27..182
e-value: 1.0E-5
score: -44.5
NoneNo IPR availableGENE3D3.40.50.300coord: 1..31
e-value: 0.043
score: 12.4
NoneNo IPR availableGENE3D3.40.50.300coord: 32..190
e-value: 1.1E-26
score: 92.8
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 26..180
e-value: 1.2E-28
score: 99.6
IPR020849Small GTPase superfamily, Ras typePROSITEPS51421RAScoord: 17..250
score: 15.697
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 20..187

Blast
[Close]
BLAST of TCONS_00001180-protein vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.022e-21
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 0 
Query:   19 MNAKKPIRIVVLGQCGVGKTALVSRCLQNTFPQDSSSGKDISHRYNMTINKKKTVCLDIVDFNDKNDAL-----ISCADAFIICYAINDRKSFEAIDAYLDKIVEANIKSPK---IGIVGNKIDLYNDREVASTEGLELAKEINSLFYETSAKVPVIDVRQVFYDLYQSLKNAKRSKKGK 190
            M     +++ + G+ GVGK+ALV R L   F  +     + ++R+  TI+ +  V ++I+D   + D +     +   + F++ Y I DR SFE +   L  I++  IK PK   + +VGNK DL + R+V++ EG +LA E+   FYE SA     ++ ++FY+L + ++  +R  +GK
Sbjct:    1 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILD-EIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR-RRMVQGK 176
The following BLAST results are available for this feature:
BLAST of TCONS_00001180-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG3.022e-2131.67Ras-related and estrogen-regulated growth inhibito... [more]
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