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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002474 ID=TCONS_00002474|Name=TCONS_00002474|organism=Clytia hemisphaerica|type=transcript|length=2416bpRun BLAST on NCBI transcript from alignment at sc0000020:882986..896347+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002474 ID=TCONS_00002474|Name=TCONS_00002474|organism=Clytia hemisphaerica|type=transcript|length=13362bp|location=Sequence derived from alignment at sc0000020:882986..896347+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002474 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 5.722e-75 Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 3
Query: 1443 GVIRCGHFCKERGFTDEVRTLANDLVACTRRLWQYTKVKMLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSQWQHECTRVICDRFVNEMDKSWFRKVAVQICDEEIGASHDLSCLEEEAYFVDFLRDAPEPTGDEPDDADFEAPKIYE 1910
G+I CG+F R F ++ + +LV+ R LWQ+TKVKMLPTP+KFHY+FNLRDLSRIWQGML ++ TLLS ++HEC+RVI DRF+ D+ WF + +E IG S SC+ E YFVDFLR+ PEPTGDEP+D+ FE PKIYE
Sbjct: 2608 GIIGCGYFDPCRSFKPQICEMIVNLVSVGRVLWQWTKVKMLPTPSKFHYIFNLRDLSRIWQGMLTIKAEECASIPTLLSLFKHECSRVIADRFITPEDEQWFNAHLTRAVEENIG-SDAASCILPEPYFVDFLREMPEPTGDEPEDSVFEVPKIYE 2762 HSP 2 Score: 119.783 bits (299), Expect = 5.722e-75 Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 1972 IYRI-ESMDSLRERLSHFMHQYNESVRGSGLDLVFFEDAITSLLKISRILATPRGNALLVGVGGSGKQSLTRLASFIAGYKTFQITITRS 2238
IY + S D L E+L + Q+NE +RG+ LDLVFF+DA+T L+KISRI+ T GNALLVGVGGSGKQSL+RLASFIAGY+ FQIT+TRS
Sbjct: 2760 IYELMPSFDFLAEKLQFYQRQFNEIIRGTSLDLVFFKDAMTHLIKISRIIRTSCGNALLVGVGGSGKQSLSRLASFIAGYQIFQITLTRS 2849 HSP 3 Score: 174.481 bits (441), Expect = 6.945e-52 Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1
Query: 1147 TNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKQMSVFIDDINMPVINEWGDQVSFVVV 1461
TNFLIDTIAKQ KA LL GEQGTAKT+M+++Y+K YDPEV L+K NFSSA+ PM FQRTIESYVDKR+GSTYGP G++M+VFIDDINMPVINEWGDQ++ +V
Sbjct: 2438 TNFLIDTIAKQHKAVLLTGEQGTAKTVMVKAYLKKYDPEVQLSKSLNFSSATEPMMFQRTIESYVDKRIGSTYGPPGGRKMTVFIDDINMPVINEWGDQITNEIV 2542 HSP 4 Score: 50.0618 bits (118), Expect = 6.945e-52 Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3
Query: 1050 GKWCHWSSRVEEYIYPMDHNPEYSSILVPNVLN 1148
G W HW+ +++ Y YP D PEYSSILVPNV N
Sbjct: 2403 GDWEHWNKKLQPYYYPTDSIPEYSSILVPNVDN 2435 The following BLAST results are available for this feature:
BLAST of TCONS_00002474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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