TCONS_00000631-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000631-protein
Unique NameTCONS_00000631-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000631-protein ID=TCONS_00000631-protein|Name=TCONS_00000631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MIKTPYKMSVNGSSNSASAQSWEGLRKKARVLENELEMKLVSFSKLGINQ
QKGYQKVEEKEALLGSSSDTMFETMSLEIEKLLSNLTEVNDSMSAFLSDM
SIGEANSAQLHTMQRHRDILQDYSHEFSKTKANIQATKEREDLLGSVRRD
IYEYKTGANRRTDLYLKENDHLKNSDRMADEIIDMAMTTKENLGSQRRLF
SNISNRVVSLTNRFPVINSLVQKINVRKRRDTLILGFVVSLCIILLLLYA
LH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000377XLOC_000377Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000631TCONS_00000631Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023601Golgi_SNAP_su1
Vocabulary: Cellular Component
TermDefinition
GO:0005801cis-Golgi network
GO:0016021integral component of membrane
GO:0000139Golgi membrane
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availablePFAMPF12352V-SNARE_Ccoord: 164..228
e-value: 5.2E-18
score: 65.0
NoneNo IPR availableGENE3D1.20.5.110coord: 109..252
e-value: 4.4E-4
score: 19.4
NoneNo IPR availableCDDcd15864SNARE_GS28coord: 162..227
e-value: 9.00624E-25
score: 93.2721
IPR023601Golgi SNAP receptor complex, subunit 1PIRSFPIRSF027109Golgi_SNAREcoord: 14..252
e-value: 1.9E-72
score: 241.5

Blast
[Close]
BLAST of TCONS_00000631-protein vs. Swiss-Prot (Human)
Match: GOSR1 (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.319e-93
Identity = 134/248 (54.03%), Postives = 183/248 (73.79%), Query Frame = 0 
Query:   16 SASAQSWEGLRKKARVLENELEMKLVSFSKLGI--------NQQKGYQKVEEKEALLGSSSDTMFETMSLEIEKLLSNLTEVNDSMSAFLSDMSIGEANSAQLHTMQRHRDILQDYSHEFSKTKANIQATKEREDLLGSVRRDIYEYKTGA---NRRTDLYLKENDHLKNSDRMADEIIDMAMTTKENLGSQRRLFSNISNRVVSLTNRFPVINSLVQKINVRKRRDTLILGFVVSLCIILLLLYALH 252
            + ++  WE LRK+AR LENEL++KLVSFSKL          + ++     +    L GSS D MFETM++EIE+LL+ LT VND M+ + +   +   N+A +HT+QRHRDILQDY+HEF KTKAN  A +ERE+L+GSVR+DI  YK+G+   NRRT+L+LKE+DHL+NSDR+ +E I +AM TKEN+ SQR +  +I +++ +L NRFP +NSL+Q+IN+RKRRD+LILG V+ +C ILLLLYA H
Sbjct:    3 AGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAFH 250
The following BLAST results are available for this feature:
BLAST of TCONS_00000631-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GOSR12.319e-9354.03Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
back to top