Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000270-protein ID=TCONS_00000270-protein|Name=TCONS_00000270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=855bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
Vocabulary: Biological Process
Term Definition
GO:0035556 intracellular signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0035556 intracellular signal transduction
molecular_function
GO:0005515 protein binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 800 Expect = 4.5 / Score = 12.9 Expect = 140.0 / Score = 3.4 Expect = 310.0 / Score = 1.3 Expect = 0.012 / Score = 24.8 Expect = 42.0 / Score = 6.7 Expect = 0.0017 / Score = 17.8 Expect = 2.3E-5 / Score = 24.3 Score = Expect = 2.0E-15 / Score = 56.3 Expect = 2.5E-16 / Score = 59.1 Expect = 7.0E-8 / Score = 30.8 Score = Score = Score = Score = 8.861 Score = Sequence SM00320 G3DSA:3.10.20.230 PF03607 SSF89837 PF03451 G3DSA:2.130.10.10 G3DSA:2.130.10.10 mobidb-lite mobidb-lite PS00678 PS50294 SSF50978
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001680 WD40 repeat SMART SM00320 WD40_4 coord: 706..746 IPR003533 Doublecortin domain GENE3D 3.10.20.230 coord: 337..472 IPR003533 Doublecortin domain PFAM PF03607 DCX coord: 404..453 IPR003533 Doublecortin domain SUPERFAMILY 89837 Doublecortin (DC) coord: 390..454 IPR005108 HELP PFAM PF03451 HELP coord: 512..558 IPR015943 WD40/YVTN repeat-like-containing domain GENE3D 2.130.10.10 coord: 669..841 IPR015943 WD40/YVTN repeat-like-containing domain GENE3D 2.130.10.10 coord: 489..668 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 237..382 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 24..43 IPR019775 WD40 repeat, conserved site PROSITE PS00678 WD_REPEATS_1 coord: 733..747 IPR017986 WD40-repeat-containing domain PROSITE PS50294 WD_REPEATS_REGION coord: 715..798 IPR017986 WD40-repeat-containing domain SUPERFAMILY 50978 WD40 repeat-like coord: 521..812
Blast
BLAST of TCONS_00000270-protein vs. Swiss-Prot (Human)
Match:
EMAL1 (Echinoderm microtubule-associated protein-like 1 OS=Homo sapiens GN=EML1 PE=1 SV=3)
HSP 1 Score: 226.483 bits (576), Expect = 1.124e-62
Identity = 129/338 (38.17%), Postives = 192/338 (56.80%), Query Frame = 0
Query: 521 LQLDWVYGYNGRNCRNNIVLLPSEELLYFVAKVVVIFNDQQQTQRFYAEHTDEIRSIAQHPSNLWQIATGQVSG--GDSGDMA-HVRIWDSKILHTLNVLEFDSMNLSVECLDFCSSNNGERLATVANGNGEWYLTVWDWEEGIKLSHSEPYEDHYAELDIQFDPFDSTSVVTCGKEHVFFWDVSQPDAVYRVGFFEDYSTPEYVTCCSFNHDGRLITGDSNGYIHVWDTHLKRTLSTVPTNHTGSIITLRVLSDFHVVTGGGADRKLTLVSLIDSVPTKAEFELPEHVGGVVSIVPLFGGFSGGDKDFDFLRLVVGTSCNSILAGSMTEAFECIVKG 855
L+L+WVYGY GR+CRNN+ LLP+ E +YF+A VVV++N ++Q QR YA H D+++ +A HP + IATGQV+G D + HVRIWDS L+TL+V+ + +V C+ F SN G L V + N L+VWDW++ KL+ + + D F P D+ +VTCGK H++FW + + G FE P++V C +F+ +G ITGDS+G I VW R V H G I L +L D +V+GGG DRK L+S + + E+PE G + ++ + G D +++GT+ N +L G+++ F I +G
Sbjct: 221 LKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRI-TIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNGGTNLCAVDDSNDH-VLSVWDWQKEEKLADVKCSNEAVFAAD--FHPTDTNIIVTCGKSHLYFWTLEGSSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKDRK--LISWSGNYQKLRKTEIPEQFGPIRTV-------AEGKGDV----ILIGTTRNFVLQGTLSGDFTPITQG 541
The following BLAST results are available for this feature:
