TCONS_00002531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002531
Unique NameTCONS_00002531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002531 ID=TCONS_00002531|Name=TCONS_00002531|organism=Clytia hemisphaerica|type=transcript|length=2656bp
cgtctttgtgtgTTTTAAGGGGTATATTTTACCGAACCGGCTGAGTTGGT
CTTACGCTCTTTTTGTGTCTAACTCGAAAAAAGAAGGAGAGTCAAAGAGT
CTTACAGTcttagaacaaatttgtgtgaTGGCATTGAACACAAAATGGCT
TCCAAAGTGAAAGCACAAAGAACATGCACTTTGTGCAAGAATGATAATAG
AAATAAGAATGATTTCAACTGCATCTCACAGCCACTAAAGGAAGATTTGT
CTGCATTTTGCTGGATTTTACAGAAGAAAATGCCAAAAGACTTTGCTTCC
GACGACAGTTGCAGAATCTGCAACAAgtgcaaaaagaaaattgttagGGT
AGGTAGTAGCATTCattataaaattgaattttattgTACTTTATTGAAGC
CTTGTTTGAAACATAATCCTAAACAAACGCGAGTTTAATTTGATGGAAAT
TCGATGCCTTTTACCTAAATTTTGTTTGGAATTATAAAACAATactcaaa
tttctaaaagtttGTTTGTCATTTGTTTATTGACTTCTTCAAACGCCATT
GATTGATGTGCTTTTAACATGCAAGCAGCGAAATCATAGTGATTGCCAAG
AGCAGAATTGCATAAAAGCTGTTGCAAGTTAAGTCCGTATTGCAAGTTAA
GTCCGTATTGCAAGTTATGGCAGTTCAGGTTAATtccttttattctttta
ttttatattttacttgCTTATTTTTTACAATACAGATGAAAAAGAACATG
ACCAAGCTCAAAGTTGAGATACAAGATTTCTTGTCAAAAATGGAACTATT
AACTGATACAGAAACTTTAGACAGCTCAAGAAACATCAGTAACATTAACA
GACTGACAAGTGACAGGCAGACATTTAATGCAGAGACAAGTGACACGAAG
ACATTTAACACAGGGACAAGTGACAGGCAGACGTTTAACGCAGAGACAAG
TGACAGGCAGACGTTTAACACAGAGACAAGTGACAGACAGACAAGTGACA
CAAAAACAATTGACATGGACACTTTGGACAAAGTAAGTACAAGTAATCTC
GAGACAAGTAACGAACAGACAATTGACATGGTTATAAATGACGATAGACT
TTTGAATGACAAAGAAACAAGTGACACACATCAAAATGACACACAGACAA
ATAATGGACAGACAACTGTTGAACCAGCAAGTGATGCCCAAACAAGTAAT
GGTGGAAATGAGTCAGTTCTGGAgatgaaaaaatgtaaaactcCGAAGGC
ATTCATACATGTTCATTGGCCTTCTGGTGAACGCAATCGTGAGATCAAAT
CCGACCTAAACCCCTTAGCTGTCTGTCTTTTGAGAGGGACTTACAGTGAC
ATTGCTAAAAAGTGTTGGAAACACGAGGTCTTAAagaaagagattttcaa
actggTGCAAAAAGATATCGACAATGAAACAGTGATGATTTGCAAGAAAA
AGGTATTTAActgggtgcatgtcactagtccaaCACTTTCTAGTCcaaca
gtaaaatagtccgaatctattttaaaataaatttacaatttagaagtctt
tttttctgacgtcacttttgtcagaaaacaaaagattttagaatgttgaa
taagggtttttcattgagataatattaataaaagttcattatggtggcat
tttgacataattagaaataaaggaccaatcaaatttgctTTATTTGGACC
TGTTTGGACCATTAAAAAGATCACTTATAGCAAAAAGCTATTCTATAAAA
ACTTTATtgctaagaaaaataaataaatctcaTTAAATTTGAAAGGTTGA
GCTTCACTGGTATTCtgaactttttaagaaaattgttgaTGGGAAGAAAA
CTGTTTCACCGAGCATTCTCCAAAAAACTTCCAAGGAAGATATGATGaac
ttttcattggataaagtGATGGCTGAATTAAAACAATTCTTTCCGATGCT
GAGCTCCATTCTAATAACAGTTGCAAAGAAAACGAAAGCCAGCATTCAAG
TTGACAATAGCAATCATTACAAAGTCATCAATACAATTTGCATGGCAGCC
TCGATTCTTCTTAAAAACCGTTTTGCCAAAATGACATCATTGCAGCTTTA
TGTCTCTCTCATCATCAACCATTCATCATACACATCGTCAATGAAACGTT
TGCAGGCACTTCGACTTGTTGTTTCCACACAATTTCTAAACAAAGTCATG
GATTTGTTTGGAAAAGACCACGACCAGCCTTTGAAGGATGCAAAGGCATA
TCTTGAAGATAGACTGAAAACAGAAAATGAGCCAATTGCTGTACCGATTC
CTGAATTTAACACTTCAATTGCCGGACAACTTCAGGACAAAGTGATTCCA
AATACCAATGACAGTGATAGATGGAGGAAATACAATCCCATTGATGATAT
CACaccaacaatttttttgaaccatatattttttattttggatttAATAT
GGTAGAAAATGAGTGCAGTAAGGGGTTTCCTAATGGGacttgcaattttt
taaactattcaatttttcgttcttaAATAAACAACAGTctaaaaaaactc
attttcggATACCCTACTGCTGAACTTCCTTGATttaagtttaaagtttt
ttttaaatgccaATTTTTTCAGGTCCTAAAAGCAAAGTATTAGAAAGAGG
ACCAGA
Run BLAST on NCBI

transcript from alignment at sc0000020:865365..868452-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002531 ID=TCONS_00002531|Name=TCONS_00002531|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at sc0000020:865365..868452- (Clytia hemisphaerica)
CGTCTTTGTGTGTTTTAAGGGGTATATTTTACCGAACCGGCTGAGTTGGT
CTTACGCTCTTTTTGTGTCTAACTCGAAAAAAGAAGGAGAGTCAAAGAGT
CTTACAGTCTTAGAACAAATTTGTGTGATGGCATTGAACACAAAATGGCT
TCCAAAGTGAAAGCACAAAGAACATGCACTTTGTGCAAGAATGATAATAG
AAATAAGAATGATTTCAACTGCATCTCACAGCCACTAAAGGAAGATTTGT
CTGCATTTTGCTGGATTTTACAGAAGAAAATGCCAAAAGACTTTGCTTCC
GACGACAGTTGCAGAATCTGCAACAAGTGCAAAAAGAAAATTGTTAGGGT
AGGTAGTAGCATTCATTATAAAATTGAATTTTATTGTACTTTATTGAAGC
CTTGTTTGAAACATAATCCTAAACAAACGCGAGTTTAATTTGATGGAAAT
TCGATGCCTTTTACCTAAATTTTGTTTGGAATTATAAAACAATACTCAAA
TTTCTAAAAGTTTGTTTGTCATTTGTTTATTGACTTCTTCAAACGCCATT
GATTGATGTGCTTTTAACATGCAAGCAGCGAAATCATAGTGATTGCCAAG
AGCAGAATTGCATAAAAGCTGTTGCAAGTTAAGTCCGTATTGCAAGTTAA
GTCCGTATTGCAAGTTATGGCAGTTCAGGTTAATTCCTTTTATTCTTTTA
TTTTATATTTTACTTGCTTATTTTTTACAATACAGATGAAAAAGAACATG
ACCAAGCTCAAAGTTGAGATACAAGATTTCTTGTCAAAAATGGAACTATT
AACTGATACAGAAACTTTAGACAGCTCAAGAAACATCAGTAACATTAACA
GACTGACAAGTGACAGGCAGACATTTAATGCAGAGACAAGTGACACGAAG
ACATTTAACACAGGGACAAGTGACAGGCAGACATTTAACACAGAGACAAG
TGATAGGCAGACGTTTAACGCAGAGACAAGTGACAGGCAGACGTTTAACA
CAGAGACAAGTGACAGGCAGACGTTTAACACAGAGACAAGTGACAGACAG
ACAAGTGACACAAAAACAATTGACATGGACACTTTGGACAAAGTAAGTAC
AAGTAATCTCGAGACAAGTAACGAACAGACAATTGACATGGTTATAAATG
ACGATAGACTTTTGAATGACAAAGAAACAAGTGACACACATCAAAATGAC
ACACAGACAAATAATGGACAGACAACTGTTGAACCAGCAAGTGATGCCCA
AACAAGTAATGGTGGAAATGAGTCAGTTCTGGAGATGAAAAAATGTAAAA
CTCCGAAGGCATTCATACATGTTCATTGGCCTTCTGGTGAACGCAATCGT
GAGGTAATAGTCACCTTGGGTCAATAATGGGACAGGACAGTAAAAATCAT
TTGTGACAGCCTCATATATCATGTTATTGTTACATATATTAACGTTGAGA
CAAAAAGTCTTTTTTAAAGTTCTAATTTGATTTATTATCACATACTACAG
TATTTCAATTTTATTTCAATTTAATTCAATTCTAGATCAAATCCGACCTA
AACCCCTTAGCTGTCTGTCTTTTGAGAGGGACTTACAGTGACATTGCTAA
AAAGTGTTGGAAACACGAGGTCTTAAAGAAAGAGATTTTCAAACTGGTGC
AAAAAGATATCGACAATGAAACAGTGATGATTTGCAAGAAAAAGGTATTT
AACTGGGTGCATGTCACTAGTCCAACACTTTCTAGTCCAACAGTAAAATA
GTCCGAATCTATTTTAAAATAAATTTACAATTTAGAAGTCTTTTTTTCTG
ACGTCACTTTTGTCAGAAAACAAAAGATTTTAGAATGTTGAATAAGGGTT
TTTCATTGAGATAATATTAATAAAAGTTCATTATGGTGGCATTTTGACAT
AATTAGAAATAAAGGACCAATCAAATTTGCTTTATTTGGACCTGTTTGGA
CCATTAAAAAGATCACTTATAGCAAAAAGCTATTCTATAAAAACTTTATT
GCTAAGAAAAATAAATAAATCTCATTAAATTTGAAAGGTTGAGCTTCACT
GGTATTCTGAACTTTTTAAGAAAATTGTTGATGGGAAGAAAACTGTTTCA
CCGAGCATTCTCCAAAAAACTTCCAAGGAAGATATGATGAACTTTTCATT
GGATAAAGTGATGGCTGAATTAAAACAATTCTTTCCGATGCTGAGCTCCA
TTCTAATAACAGTTGCAAAGAAAACGAAAGCCAGCATTCAAGTTGACAAT
AGCAATCATTACAAAGTCATCAATACAATTTGCATGGCAGCCTCGATTCT
TCTTAAAAACCGTTTTGCCAAAATGACATCATTGCAGCTTTATGTCTCTC
TCATCATCAACCATTCATCATACACAGTTTGTATTATTTATTTTTGAAAA
TTATTCTGCTCTGTTCTATTAGTTTTTTGGCTCTGAAGAGAACGTTTGAA
AACTATAAAAACTATTTTACTTCTGCATTAATAGATTTCATATATGATCG
CAAACAATACCCTCTACAGGATAATCTTACAATTCTAATTCTCCAATTCT
ATTTTCTTATGTCTAGTCGTCAATGAAACGTTTGCAGGCACTTCGACTTG
TTGTTTCCACACAATTTCTAAACAAAGTCATGGATTTGTTTGGAAAAGAC
CACGACCAGCCTTTGAAGGATGCAAAGGCATATCTTGAAGATAGACTGAA
AACAGAAAATGAGCCAATTGCTGTACCGATTCCTGAATTTAACACTTCAA
TTGCCGGACAACTTCAGGACAAAGTGATTCCAAATACCAATGACAGTGAT
AGATGGAGGAAATACAATCCCATTGATGATATCACACCAACAATTTTTTT
GAACCATATATTTTTTATTTTGGATTTAATATGGTAGAAAATGAGTGCAG
TAAGGGGTTTCCTAATGGGACTTGCAATTTTTTAAACTATTCAATTTTTC
GTTCTTAAATAAACAACAGTCTAAAAAAACTCATTTTCGGATACCCTACT
GCTGAACTTCCTTGATTTAAGTTTAAAGTTTTTTTTAAATGCCAATTTTT
TCAGGTCCTAAAAGCAAAGTATTAGAAAGAGGACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001352XLOC_001352Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002531-exon-sc0000020-1575043694:867521..868452TCONS_00002531-exon-sc0000020-1575043694:867521..868452Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1575043694:867437..867490TCONS_00002531-exon-sc0000020-1575043694:867437..867490Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1575043694:867100..867406TCONS_00002531-exon-sc0000020-1575043694:867100..867406Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1575043694:866077..866917TCONS_00002531-exon-sc0000020-1575043694:866077..866917Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1575043694:865365..865886TCONS_00002531-exon-sc0000020-1575043694:865365..865886Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1510915933:867521..868452TCONS_00002531-exon-sc0000020-1510915933:867521..868452Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1510915933:867437..867490TCONS_00002531-exon-sc0000020-1510915933:867437..867490Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1510915933:867100..867406TCONS_00002531-exon-sc0000020-1510915933:867100..867406Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1510915933:866077..866917TCONS_00002531-exon-sc0000020-1510915933:866077..866917Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1510915933:865365..865886TCONS_00002531-exon-sc0000020-1510915933:865365..865886Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1491911889:867521..868452TCONS_00002531-exon-sc0000020-1491911889:867521..868452Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1491911889:867437..867490TCONS_00002531-exon-sc0000020-1491911889:867437..867490Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1491911889:867100..867406TCONS_00002531-exon-sc0000020-1491911889:867100..867406Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1491911889:866077..866917TCONS_00002531-exon-sc0000020-1491911889:866077..866917Clytia hemisphaericaexon
TCONS_00002531-exon-sc0000020-1491911889:865365..865886TCONS_00002531-exon-sc0000020-1491911889:865365..865886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:865365..868452 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0334533	0.00237057	0	0.203232	0	0	0	0.181074	0	0	0	0	0	0	0	0	0	0	0	8.44152e-06	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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