TCONS_00002523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002523
Unique NameTCONS_00002523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002523 ID=TCONS_00002523|Name=TCONS_00002523|organism=Clytia hemisphaerica|type=transcript|length=1411bp
GTAATAGACAGGGTAAGTGATAATTATGTCACTCGTTAATTAAACTATTG
ATGGTACTGATCAAGGGTGATCTGGTGacttgaattttcaaaagagtTCA
AATATTGAAGATTTAATATGCGGGCATTACAGAGCCAAACCTTGGgtttg
gtTGGTAGTGCAATCCTACTGATAACAATCTTCTGTGCACACGCTGTAGC
AGCTGATAAAGATGAATATGAAATAAGTATCGCTGGTCGAATCGCAGAAA
TCAATATGAAGAATACTCCTTCTtcagacGATGAAAGGATACCAGTGGAA
ATGACAACCAACCGTAAAAGACGTGCCGCTTTCTATATCTTCAATAAATG
GGACAAAAGTGCAGATGGGCTCGTTTATGTACCCTACGAGCTTTTCCAAA
TGGGCAGTCAAGgtcaaTTTGCTGTAGCAGCTGCTGCCAGagagtttgaa
aataaaacgtGTATTCGATTACGCGAGAAGAGACCAGAAGATGAACATTT
TATACGAGTTATTGACAGCTCCTTAGACGGgtGTAGTTCATCAATCGGGC
GAGTAGGTGGTCGACAAACTATCTCCTTAGCAAGTAATGGATGTCAAATA
GAAGGAATAGCTATCCATGAGTTCCTCCATGCTTTGGGACTTGGACACAC
GCAGCAACGTGGTGATCGAGATCgttttatgaaaattgattGGTCAAATA
TACAGATAGgttttgaaGGCAACTTTCGAATACCACCTTTGGATTATTTG
GATGTGCTTGGTGAACACTTTTGTTATGAATCAGTTATGATGTATGGAAG
GAGGGATTTTGCAATTGACCGGTCAAAAGATGTCATCTCTACACCAGGAT
ACGACGGAATAATTGGCCAGCGAGTGACATGGGCAAAATGTGATATCGAC
CAAATTAATCGTTATTATCATTGCGAAGATTATGTGAAAATCAAGGGCCC
TGGTGAATAACCTGGAGATGCTGTAAATATTGAAAGAAAGAGAGagacaa
aatttatttaaacaATATTTTATATTAATGTTATGTGTgccttttttttt
gaaaagataccACTGTAGcctgggggtactaggtttgcgagaagacgggt
atgtccgagccaaagcgTGAAAATTGTCCCTTAGAAAGACTGAATTTTGT
CaattattttgacgtttttgcctCCCTTATTTAGACAGTCTATTATCATA
AGTCACAGTCTatattatcaaatttttggtccaaatttcaaaaatgtttc
tcttCCTGGGCGCGGTAGATAAAATCTTCAATAGAAAAAAGCACACACCC
CTTTTGGATGCCACTGCTATAGTGAGATGTGAGAATTTGATTTATTATGT
TATAACTGGGTTTATTATTTATatgtagaaaaataaagaaaaaaacatat
gaTACTGTGAC
Run BLAST on NCBI

protein sequence of TCONS_00002523-protein

>TCONS_00002523-protein ID=TCONS_00002523-protein|Name=TCONS_00002523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MRALQSQTLGLVGSAILLITIFCAHAVAADKDEYEISIAGRIAEINMKNT
PSSDDERIPVEMTTNRKRRAAFYIFNKWDKSADGLVYVPYELFQMGSQGQ
FAVAAAAREFENKTCIRLREKRPEDEHFIRVIDSSLDGCSSSIGRVGGRQ
TISLASNGCQIEGIAIHEFLHALGLGHTQQRGDRDRFMKIDWSNIQIGFE
GNFRIPPLDYLDVLGEHFCYESVMMYGRRDFAIDRSKDVISTPGYDGIIG
QRVTWAKCDIDQINRYYHCEDYVKIKGPGE
Run BLAST on NCBI

transcript from alignment at sc0000020:760645..769624-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002523 ID=TCONS_00002523|Name=TCONS_00002523|organism=Clytia hemisphaerica|type=transcript|length=8980bp|location=Sequence derived from alignment at sc0000020:760645..769624- (Clytia hemisphaerica)
GTAATAGACAGGGTAAGTGATAATTATGTCACTCGTTAATTAAACTATTG
ATGGTACTGATCAAGGGTGATCTGGTGACTTGAATTTTCAAAAGAGTTCA
AATATTGAAGATTTAATATGCGGGCATTACAGAGCCAAACCTTGGGTAAG
ATTTCTTTTTTCTCATTTCGGATATAAAATGGAAAAATATTTTAAAAAGT
CTTGATATACGTATAATCTATATTCATCTTTGAGTCATATTTAGTTTTTG
ACAGGATAATCAACAAATTGCTTTGCAAAGTTTTGAAGAGAATTTTACTT
AAATTTCATTGATCTTTAAAACACTATTGTCTCAGTGACCCGACGAGAAT
CTTTTACACAGCTAAATACCAACAGGATGGAAAATGTCTTGTGTTGAGGT
TGACCAATATCATTATTCTACTTAAATTTAATTGGTCCTTAAAACACCCC
TGTCTCAGTGATCCGGTAAGAATCTTTCAGCCATTGGGATAGAATCCTGC
AGCTAAATTTGGGAAGATGGGAAGGGAAATGTCTTACGTTTAGCGGGTGA
TGATTTTAAATTCTATTCTTTACAGATTAAAAGTTAGGATCTTAAAATAA
TAAGACTTTCAAACTATGATAAGACTTTCAAACTATAATAAGACTTTCAA
ACTATAATAAGACTTTCAAACTAGGACAAGATTACAGTGTTATTTTCAAA
TGTAGAAAAAAATGAATCAGGGATGAATTTTTGGCAGATTTTACCAGTTG
TTAAATGGTCCACCGGGTCTGTCAGTCTGTGACACTTTGTTGTTTTTTGT
AGCTGATAGAATGAATCATAGTACCTAATGTTCCTAATAGAATGATAGTA
CCCTAATACTACCTAATAGAATGATAGTACCCTGATAGAATGAATCATAG
TACCTAATAGAATGATAGTACCCTAATACTACCTAATAGAATGATACTAC
CCTGATAGAATGAATCATACTACCTAATAGAATGATAGTACCCTAATACT
ACCTAATAGAATGATACTACCCTGATAGAATGAATCATACTAGAATCATG
AAAAAAATTAGAACTTCATTGACTTCTAATACTGTCTACCAGAGTCTGGA
GATGTTGCTTATGTCTCAATAGAATATCTTTTGGATGTTCTGTTCGAACT
CTATGACTTTTAGAAGTAGAAATACGACAGAAAGATTTTAGAGAAAGTTT
ACAAAATTGAAATTAGAGTAATCCTTCAGCTAAGGAGCTTTGAAAGACCT
TCTTGCAAAAATTCTTAAATCATCCAATTAGAGCTACACTTCAATCTTAT
TAAGATTTCGTGTCATGTTGCATTCCAAACGGTTTCAGAAAATGATTTCT
CATATGTAATTATGTACTGCAATGGGGGCGTCACTTCCTAAAATTTATAT
TCCTAACCAAGTTAAATCAACAATCAAGAAGATATTTAATTCCGTTCAAG
AAAAGGCGTAATAGAAGACACCATCGTGTCACGGACCCGGCTGGATGTAT
TTTTATTTTACTGATAAACGTTGATACAATCGTGTGCGCTATCAGAATCA
TAAAAAAATGAATGAAGAGACCGGGTTCGAGTTTGGGTGGAACCCCTTCC
CTTTGGGGAAAAACAGTCTTTAATTCATTCATGATTAGAAAATAATACCA
GCAGAATTCCTCATTGGATTTTTTCAAGCCGTAGGTAGATTTGAAATCCC
CCCCCCCTGACTACGCACAAAATATTTTACATCCCCATTGGTACATCTCA
ATCCTTCATTTTATCACCCAATGTTTAAACAATTCTTACATAAGGGCTTT
TAGGACAATACCCTAAAAGTCCATTCACTTTAAGTTGTGCACTAATCTTC
GACGAATGTTTCAATTCAAAAATATTATATACCGAAAAATAATTCAAAAA
ACTTTAAGAACATGAAGATGAAAAATGAAGAAGAAAAAGATAAACGTTTT
AACCTTTGGTGCTAGAAAAAAATTTGGTACAGAAGTGCTTTGAAGCTTTC
TACTTTCCTTAAAATTTTAGGTTTGGTTGGTAGTGCAATCCTACTGATAA
CAATCTTCTGTGCACACGCTGTAGCAGCTGATAAAGATGAATATGAAATA
AGTATCGCTGGTCGAATCGCAGAAATCAATATGAAGAATACTCCTTCTTC
AGGTACACGTTTTTTTATAAAAACATAAGGCATCTCTTAGGAATTCCTCG
AGGGAATTCTTTTGTAATACTCCCGAAACAATCCCACAATGCATCACTTT
TTTAGAAATATCAAAAACTCCGATAAGGTCTATTCAGCATTTCTTGATAA
TTTTTTATTACTTTTTTTTTTGTAGACGATGAAAGGATACCAGTGGAAAT
GACAACCAACCGTAAAAGACGTGCCGCTTTCTATATCTTCAATAAATGGG
ACAAAAGTGCAGATGGGCTCGTTTATGTACCCTACGAGCTTTTCCAAATG
GGCAGTCAAGGTAAGAGGGGGTCTATCTAACAAATACTGCATTACTAAAA
ATAGACAAATAGAACGACAAATTTCATATTTTGCCGCCCACAACCCCGAC
CGAAAGTGACTGTACCCCTACGTATTCATTCCACTTTGTTTATCAATTTA
AAGGAACGACAAATTACGTATGCGTGTTTATTAATGCAGCGTTGTTTCAA
CGTTCATCTAACGTTACATGGACGTTGTGAACATTAGATAAACGTTGAAA
CAACGTTTTTTCTCAGCTTGGAAGCGGTTAAAGGTTCTATTTTTACATAG
TGTTCCCGTTTCATAACAGACACATATTTCATATCAGGACATTGTCTGCC
TTTTGTGATATTATGCTGATATAAGCAAAAAGTTGTGTTGTTCTTTTCCT
CTTTCTGACCAATTTTGCTCCACATTCGTGTCAATCTAATGTGAACAGCT
TGTGAATTAAAATTGATAAGCAAGCAAATGGTATAACTCTTATTTAAAAA
CAAAACCTTTAAATTACAATCTGTCTGTCACCTTAGTGGTCCATCGTTTC
CGCATTTGATTCATCACATTTATTTTTTCACGACACATTCCGCGTGAATA
AAGACGCTTTCTAATTGACTCTAAAGAGCCCTAGGATTTTCGGTACATAT
TTCGTTCGATTTTTTTTTCAGGTCAATTTGCTGTAGCAGCTGCTGCCAGA
GAGTTTGAAAATAAAACGTGTATTCGATTACGCGAGAAGAGACCAGAAGA
TGAACATTTTATACGAGTTATTGACAGCTCCTTAGACGGGTATTAGCATG
CACACATTCATTCGTCATATTCTTACCCTTCCAAAAGCATCTAGAATCTG
AAAAACAGTTTGCTTAAGTAAAATTAGTCAGGTCCAATTGCGCCATTAGT
CTATCAAAACAATTTAAGTGGAGCCTAGGCTACTTAATAAACAGCGAGTT
TATGTAACTGTGTTTTTTGCTATTGAGACGGAAAGTTTCTAATTTGACTA
CATCTAAACTGACTGAGGACAAAGCTGAATATGAACTTTTACCGTTCTTG
ATTTTGCGGGTCAGAACTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTA
CCGTCCTCAAAAGTGCAAATACATAAAATCAGTAACATCCCGGCTTCAAT
GGTTCTCCTTTTGGGAATTGAAAATCCGTTTTTTTGATGAAAAAAGTTAT
TAAAATGCTATGAAAAAGTTTTAATAAAGAAAGGAGAGTGAACAATAAGG
TCATTACTGCGGACAAGGCTTGAACATGAAAAATCAATGAAAAACTATTT
TTCCTTTCTTTTTTATAGGTGTAGTTCATCAATCGGGCGAGTAGGTGGTC
GACAAACTATCTCCTTAGCAAGTAATGGATGTCAAATAGAAGGAATAGCT
ATCCATGAGTTCCTCCATGCTTTGGGACTTGGACACACGCAGCAACGTGG
TGATCGAGATCGTTTTATGAAAATTGATTGGTCAAATATACAGATAGGTA
TAAGATTCACCCAGCTCTAACAATGCCGGTTACAGAAAGTACTGAAAGTT
TTCATGGGAGAGTATTGATTTTCCATCTGAAATGAAAAAATGGATTTTTA
CACAACAATTAGCACATATTCTTGAAATATTGGCGAATAATACAGAATTC
CAAGACCGAAAAGCTCTTTATACTTTGCTGAGACGGAAATCCGTCTGAGA
CGGAAGAACTCCCAGCTGATACACAACGTTGTTTCAACGTTCATCTAACG
TTATATGGACGTTATTAACATTAGACAAACGTTGAAATAACGTTGTGTGT
CAACTGGCTATTAACACGTCACGTAACACGTGATTTCGCGAGTATTTTCT
GTAACCACCGTTGTCTAAAAAATATGAAATAGAAATCTTTCAGATGGCTG
ATACGGAAAACACCACAGCTGCAAAGGGCTATGGCGTAATGTCTTTAATA
CGGAAATGCCCAAAAAGACCGGATTTTCGCTACTAATTCTGATGAATTTA
AACAATATAACTAACTAGCCGTCCCGGCGTCGTCCGAGACGACTTCTTAC
TCCTTTTAATACGCTCGCTTCGCTCGCTTTTCTATTTTTCAGAAACTTGT
AGGGATTTGTATACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTGTTTTTTGGGATCAATCACTTATTAAC
TTTGTATCATAACTTTTTATTGAATAAATATTTTAATGAAATTTCTTCAT
AGTGATGACCTCCTAAGATCAAAGAATCTCTTCAGTGAAAATGACAGTTA
TAGCACTTTTCTACAAGATCTTCATTTTTTCTTCTTCATTTTCATCTTCA
TTTTAGAATTTTTTGAAATTTTTTTTATTTCAAATTGTTCCACTCACTAA
TATCTTTCCAACGATACCAAAATTTTAAAGATTGAAGAATTCCTTCAAAA
GTTATAGGTAAAAGAAAAAAAGAGTGCACACTTATCGTGAATAGACTTTA
GTGGTGAACACCTGGGCTTTTTTGGTTGCTTCCATCTATATCATCAGAAT
ATTATTAAATCCCCCAAAAAAGACATTTTTGCTCCCACGTTAATGTTAAG
GAGATCATCTTTTCTGTCCCAGGAGACGCCTTCAAAAATCTGGTAAATCC
AGGAGGTCAAAATGCGAATTGAAATTCGTACGTTTTAAAACTTGAAAAGA
ACCCAGAGCAGAAAATCCTGGAGTTTTATCAGCCAATTCAATGTTTTTCG
GCGATCCAAAGAATATCTGCAATCTGATTCGTTAAAAAGAGTACAATATA
TCTTGTATTTTACATGTGCAATATAAATTGACGAAAAGATGTTGTTGCAT
TGTAGCAGTAGAAGCAATCTAACGTCACTTTGCTACTAAAGTGCCCTGCG
CTTTTTTCCAACACAAAAAGTGCATTTTTTTGTGTCACCGATAAACCAGT
TATCATACATTTGATAACTATTATATATTTTCAGTGGTCAATTTACTTAT
ATTATTATAAATAACTGTCCTTTCGAAATCCAGGAACTTGTCGAGGCTAA
TCTGACAAACTTCTTATCTGACAAACGCAAACAAAGTATATGTATCCTGG
CTATAAAGATTTATTACAATATTTTCAATATAATATTTTTAGGTTTTGAA
GGCAACTTTCGAATACCACCTTTGGATTATTTGGATGTGCTTGGTGAACA
CTTTTGTTATGAATCAGTTATGATGTATGGAAGGTAGGCAGATTGAAGGG
GACTTCCTTATACGTTATAAGAACAAACCATATAAGAACATAAGGCTTCG
CTTTCCAAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCTTTGTGTGT
GGACTCAAAAACATCCTATTTCTTTGAAAAATGGTCAAAAATATTCACAA
AATGGTCAAGAACATGTTAAGAACATAAGAACATGTTAAGAGCATTTTTA
GGGCCTAAATCTCAAAAAGTTAAGAACATCCGAATGCTTCAAAATTTTAG
GACGTTCTTATAAACAAAACGTGCACTTGCCGTAGAAAAAAAATCATGCA
CTAAAATCACAAATCTTATGAATCCTATTAAGGTTGAATTTTGTAAAACG
AACCTTAGGCGGGACTAATTTACCCATTTTCCTTGCTCTATTGCCTTAAT
TCCGCCATTGAAGGAGAAGAGCTGCCTCGCTATGCTTTTGTATCATTATA
ACTAAAATTAAAAGAGTGAGTGAGTTGCGATATGAGGATTTGAAAAATAT
ATGCAGTGTCTCCATAGCTCGAAGCTCTTTAACTCGAACATTTTTTCAAG
ACTTTTTAATTAACAATAAACAAACTTGCGTTCCCCATGCAGTTCGAGAC
CGGGGAGGGGGCACTCGAGGTAAACGACCCATCGTACGTGCGGCCCATAT
GGCCCAGGGTTCTTTTTCAAAACTTCCCAAAGTGCACTGTAAGAGTCGAA
ATGAGCAAAGATGAGAAAAATTGTACTCTAAGGGTGTAAAATTTGTAAAA
TATGACCATATTTTACCTAAGAAAGGTAAAAAATTCTCAAAATAATTCGG
GTCGATTTTCCACCAAAATTTACTCAAATTTGGCCTAATCTTCTCTACAC
TTAAGGGTCCGATTCCAAAGGCCTAATTTTGGGCCGCATTTGTGGTCTTT
TTCGAGTCCCCACCCCGGGAGTTCGAGTTATGTAAACTCCACTGTGTATA
CTTTTATTTCGGCTTATAGGAGGGATTTTGCAATTGACCGGTCAAAAGAT
GTCATCTCTACACCAGGATACGACGGAATAATTGGCCAGCGAGTGACATG
GGCAAAATGTGATATCGACCAAATTAATCGTTATTATCATTGCGAAGATT
ATGTGAAAATCAAGGGCCCTGGTGAATAACCTGGAGATGCTGTAAATATT
GAAAGAAAGAGAGAGACAAAATTTATTTAAACAATATTTTATATTAATGT
TATGTGTGCCTTTTTTTTTGAAAAGATACCACTGTAGCCTGGGGGTACTA
GGTTTGCGAGAAGACGGGTATGTCCGAGCCAAAGCGTGAAAATTGTCCCT
TAGAAAGACTGAATTTTGTCAATTATTTTGACGTTTTTGCCTCCCTTATT
TAGACAGTCTATTATCATAAGTCACAGTCTATATTATCAAATTTTTGGTC
CAAATTTCAAAAATGTTTCTCTTCCTGGGCGCGGTAGATAAAATCTTCAA
TAGAAAAAAGCACACACCCCTTTTGGATGCCACTGCTATAGTGAGATGTG
AGAATTTGATTTATTATGTTATAACTGGGTTTATTATTTATATGTAGAAA
AATAAAGAAAAAAACATATGATACTGTGAC

Coding sequence (CDS) from alignment at sc0000020:760645..769624-

>TCONS_00002523 ID=TCONS_00002523|Name=TCONS_00002523|organism=Clytia hemisphaerica|type=CDS|length=5901bp|location=Sequence derived from alignment at sc0000020:760645..769624- (Clytia hemisphaerica)
GAGGGATTTTGCAATTGACCGGTCAAAAGATGTCATCTCTACACCAGGAT
ACGACGGAATAATTGGCCAGCGAGTGACATGGGCAAAATGTGATATCGAC
CAAATTAATCGTTATTATCATTGCGAAGATTATGTGAAAATCAAGGGCCC
TGGTGAATAAGTTTTGAAGGCAACTTTCGAATACCACCTTTGGATTATTT
GGATGTGCTTGGTGAACACTTTTGTTATGAATCAGTTATGATGTATGGAA
GGTGTAGTTCATCAATCGGGCGAGTAGGTGGTCGACAAACTATCTCCTTA
GCAAGTAATGGATGTCAAATAGAAGGAATAGCTATCCATGAGTTCCTCCA
TGCTTTGGGACTTGGACACACGCAGCAACGTGGTGATCGAGATCGTTTTA
TGAAAATTGATTGGTCAAATATACAGATAGGTCAATTTGCTGTAGCAGCT
GCTGCCAGAGAGTTTGAAAATAAAACGTGTATTCGATTACGCGAGAAGAG
ACCAGAAGATGAACATTTTATACGAGTTATTGACAGCTCCTTAGACGGAC
GATGAAAGGATACCAGTGGAAATGACAACCAACCGTAAAAGACGTGCCGC
TTTCTATATCTTCAATAAATGGGACAAAAGTGCAGATGGGCTCGTTTATG
TACCCTACGAGCTTTTCCAAATGGGCAGTCAAGGTTTGGTTGGTAGTGCA
ATCCTACTGATAACAATCTTCTGTGCACACGCTGTAGCAGCTGATAAAGA
TGAATATGAAATAAGTATCGCTGGTCGAATCGCAGAAATCAATATGAAGA
ATACTCCTTCTTCAGATGCGGGCATTACAGAGCCAAACCTTGGGAGGGAT
TTTGCAATTGACCGGTCAAAAGATGTCATCTCTACACCAGGATACGACGG
AATAATTGGCCAGCGAGTGACATGGGCAAAATGTGATATCGACCAAATTA
ATCGTTATTATCATTGCGAAGATTATGTGAAAATCAAGGGCCCTGGTGAA
TAAGTTTTGAAGGCAACTTTCGAATACCACCTTTGGATTATTTGGATGTG
CTTGGTGAACACTTTTGTTATGAATCAGTTATGATGTATGGAAGGTGTAG
TTCATCAATCGGGCGAGTAGGTGGTCGACAAACTATCTCCTTAGCAAGTA
ATGGATGTCAAATAGAAGGAATAGCTATCCATGAGTTCCTCCATGCTTTG
GGACTTGGACACACGCAGCAACGTGGTGATCGAGATCGTTTTATGAAAAT
TGATTGGTCAAATATACAGATAGGTCAATTTGCTGTAGCAGCTGCTGCCA
GAGAGTTTGAAAATAAAACGTGTATTCGATTACGCGAGAAGAGACCAGAA
GATGAACATTTTATACGAGTTATTGACAGCTCCTTAGACGGACGATGAAA
GGATACCAGTGGAAATGACAACCAACCGTAAAAGACGTGCCGCTTTCTAT
ATCTTCAATAAATGGGACAAAAGTGCAGATGGGCTCGTTTATGTACCCTA
CGAGCTTTTCCAAATGGGCAGTCAAGGTTTGGTTGGTAGTGCAATCCTAC
TGATAACAATCTTCTGTGCACACGCTGTAGCAGCTGATAAAGATGAATAT
GAAATAAGTATCGCTGGTCGAATCGCAGAAATCAATATGAAGAATACTCC
TTCTTCAGATGCGGGCATTACAGAGCCAAACCTTGGGAGGGATTTTGCAA
TTGACCGGTCAAAAGATGTCATCTCTACACCAGGATACGACGGAATAATT
GGCCAGCGAGTGACATGGGCAAAATGTGATATCGACCAAATTAATCGTTA
TTATCATTGCGAAGATTATGTGAAAATCAAGGGCCCTGGTGAATAAGTTT
TGAAGGCAACTTTCGAATACCACCTTTGGATTATTTGGATGTGCTTGGTG
AACACTTTTGTTATGAATCAGTTATGATGTATGGAAGGTGTAGTTCATCA
ATCGGGCGAGTAGGTGGTCGACAAACTATCTCCTTAGCAAGTAATGGATG
TCAAATAGAAGGAATAGCTATCCATGAGTTCCTCCATGCTTTGGGACTTG
GACACACGCAGCAACGTGGTGATCGAGATCGTTTTATGAAAATTGATTGG
TCAAATATACAGATAGGTCAATTTGCTGTAGCAGCTGCTGCCAGAGAGTT
TGAAAATAAAACGTGTATTCGATTACGCGAGAAGAGACCAGAAGATGAAC
ATTTTATACGAGTTATTGACAGCTCCTTAGACGGACGATGAAAGGATACC
AGTGGAAATGACAACCAACCGTAAAAGACGTGCCGCTTTCTATATCTTCA
ATAAATGGGACAAAAGTGCAGATGGGCTCGTTTATGTACCCTACGAGCTT
TTCCAAATGGGCAGTCAAGGTTTGGTTGGTAGTGCAATCCTACTGATAAC
AATCTTCTGTGCACACGCTGTAGCAGCTGATAAAGATGAATATGAAATAA
GTATCGCTGGTCGAATCGCAGAAATCAATATGAAGAATACTCCTTCTTCA
GATGCGGGCATTACAGAGCCAAACCTTGGGAGGGATTTTGCAATTGACCG
GTCAAAAGATGTCATCTCTACACCAGGATACGACGGAATAATTGGCCAGC
GAGTGACATGGGCAAAATGTGATATCGACCAAATTAATCGTTATTATCAT
TGCGAAGATTATGTGAAAATCAAGGGCCCTGGTGAATAAGTTTTGAAGGC
AACTTTCGAATACCACCTTTGGATTATTTGGATGTGCTTGGTGAACACTT
TTGTTATGAATCAGTTATGATGTATGGAAGGTGTAGTTCATCAATCGGGC
GAGTAGGTGGTCGACAAACTATCTCCTTAGCAAGTAATGGATGTCAAATA
GAAGGAATAGCTATCCATGAGTTCCTCCATGCTTTGGGACTTGGACACAC
GCAGCAACGTGGTGATCGAGATCGTTTTATGAAAATTGATTGGTCAAATA
TACAGATAGGTCAATTTGCTGTAGCAGCTGCTGCCAGAGAGTTTGAAAAT
AAAACGTGTATTCGATTACGCGAGAAGAGACCAGAAGATGAACATTTTAT
ACGAGTTATTGACAGCTCCTTAGACGGACGATGAAAGGATACCAGTGGAA
ATGACAACCAACCGTAAAAGACGTGCCGCTTTCTATATCTTCAATAAATG
GGACAAAAGTGCAGATGGGCTCGTTTATGTACCCTACGAGCTTTTCCAAA
TGGGCAGTCAAGGTTTGGTTGGTAGTGCAATCCTACTGATAACAATCTTC
TGTGCACACGCTGTAGCAGCTGATAAAGATGAATATGAAATAAGTATCGC
TGGTCGAATCGCAGAAATCAATATGAAGAATACTCCTTCTTCAGATGCGG
GCATTACAGAGCCAAACCTTGGGAGGGATTTTGCAATTGACCGGTCAAAA
GATGTCATCTCTACACCAGGATACGACGGAATAATTGGCCAGCGAGTGAC
ATGGGCAAAATGTGATATCGACCAAATTAATCGTTATTATCATTGCGAAG
ATTATGTGAAAATCAAGGGCCCTGGTGAATAAGTTTTGAAGGCAACTTTC
GAATACCACCTTTGGATTATTTGGATGTGCTTGGTGAACACTTTTGTTAT
GAATCAGTTATGATGTATGGAAGGTGTAGTTCATCAATCGGGCGAGTAGG
TGGTCGACAAACTATCTCCTTAGCAAGTAATGGATGTCAAATAGAAGGAA
TAGCTATCCATGAGTTCCTCCATGCTTTGGGACTTGGACACACGCAGCAA
CGTGGTGATCGAGATCGTTTTATGAAAATTGATTGGTCAAATATACAGAT
AGGTCAATTTGCTGTAGCAGCTGCTGCCAGAGAGTTTGAAAATAAAACGT
GTATTCGATTACGCGAGAAGAGACCAGAAGATGAACATTTTATACGAGTT
ATTGACAGCTCCTTAGACGGACGATGAAAGGATACCAGTGGAAATGACAA
CCAACCGTAAAAGACGTGCCGCTTTCTATATCTTCAATAAATGGGACAAA
AGTGCAGATGGGCTCGTTTATGTACCCTACGAGCTTTTCCAAATGGGCAG
TCAAGGTTTGGTTGGTAGTGCAATCCTACTGATAACAATCTTCTGTGCAC
ACGCTGTAGCAGCTGATAAAGATGAATATGAAATAAGTATCGCTGGTCGA
ATCGCAGAAATCAATATGAAGAATACTCCTTCTTCAGATGCGGGCATTAC
AGAGCCAAACCTTGGGAGGGATTTTGCAATTGACCGGTCAAAAGATGTCA
TCTCTACACCAGGATACGACGGAATAATTGGCCAGCGAGTGACATGGGCA
AAATGTGATATCGACCAAATTAATCGTTATTATCATTGCGAAGATTATGT
GAAAATCAAGGGCCCTGGTGAATAAGTTTTGAAGGCAACTTTCGAATACC
ACCTTTGGATTATTTGGATGTGCTTGGTGAACACTTTTGTTATGAATCAG
TTATGATGTATGGAAGGTGTAGTTCATCAATCGGGCGAGTAGGTGGTCGA
CAAACTATCTCCTTAGCAAGTAATGGATGTCAAATAGAAGGAATAGCTAT
CCATGAGTTCCTCCATGCTTTGGGACTTGGACACACGCAGCAACGTGGTG
ATCGAGATCGTTTTATGAAAATTGATTGGTCAAATATACAGATAGGTCAA
TTTGCTGTAGCAGCTGCTGCCAGAGAGTTTGAAAATAAAACGTGTATTCG
ATTACGCGAGAAGAGACCAGAAGATGAACATTTTATACGAGTTATTGACA
GCTCCTTAGACGGACGATGAAAGGATACCAGTGGAAATGACAACCAACCG
TAAAAGACGTGCCGCTTTCTATATCTTCAATAAATGGGACAAAAGTGCAG
ATGGGCTCGTTTATGTACCCTACGAGCTTTTCCAAATGGGCAGTCAAGGT
TTGGTTGGTAGTGCAATCCTACTGATAACAATCTTCTGTGCACACGCTGT
AGCAGCTGATAAAGATGAATATGAAATAAGTATCGCTGGTCGAATCGCAG
AAATCAATATGAAGAATACTCCTTCTTCAGATGCGGGCATTACAGAGCCA
AACCTTGGGAGGGATTTTGCAATTGACCGGTCAAAAGATGTCATCTCTAC
ACCAGGATACGACGGAATAATTGGCCAGCGAGTGACATGGGCAAAATGTG
ATATCGACCAAATTAATCGTTATTATCATTGCGAAGATTATGTGAAAATC
AAGGGCCCTGGTGAATAAGTTTTGAAGGCAACTTTCGAATACCACCTTTG
GATTATTTGGATGTGCTTGGTGAACACTTTTGTTATGAATCAGTTATGAT
GTATGGAAGGTGTAGTTCATCAATCGGGCGAGTAGGTGGTCGACAAACTA
TCTCCTTAGCAAGTAATGGATGTCAAATAGAAGGAATAGCTATCCATGAG
TTCCTCCATGCTTTGGGACTTGGACACACGCAGCAACGTGGTGATCGAGA
TCGTTTTATGAAAATTGATTGGTCAAATATACAGATAGGTCAATTTGCTG
TAGCAGCTGCTGCCAGAGAGTTTGAAAATAAAACGTGTATTCGATTACGC
GAGAAGAGACCAGAAGATGAACATTTTATACGAGTTATTGACAGCTCCTT
AGACGGACGATGAAAGGATACCAGTGGAAATGACAACCAACCGTAAAAGA
CGTGCCGCTTTCTATATCTTCAATAAATGGGACAAAAGTGCAGATGGGCT
CGTTTATGTACCCTACGAGCTTTTCCAAATGGGCAGTCAAGGTTTGGTTG
GTAGTGCAATCCTACTGATAACAATCTTCTGTGCACACGCTGTAGCAGCT
GATAAAGATGAATATGAAATAAGTATCGCTGGTCGAATCGCAGAAATCAA
TATGAAGAATACTCCTTCTTCAGATGCGGGCATTACAGAGCCAAACCTTG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001349XLOC_001349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002523-proteinTCONS_00002523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002523-exon-sc0000020-1575043694:769480..769624TCONS_00002523-exon-sc0000020-1575043694:769480..769624Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:767473..767604TCONS_00002523-exon-sc0000020-1575043694:767473..767604Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:767165..767299TCONS_00002523-exon-sc0000020-1575043694:767165..767299Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:766386..766503TCONS_00002523-exon-sc0000020-1575043694:766386..766503Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:765678..765856TCONS_00002523-exon-sc0000020-1575043694:765678..765856Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:762242..762332TCONS_00002523-exon-sc0000020-1575043694:762242..762332Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1575043694:760645..761255TCONS_00002523-exon-sc0000020-1575043694:760645..761255Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:769480..769624TCONS_00002523-exon-sc0000020-1510915933:769480..769624Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:767473..767604TCONS_00002523-exon-sc0000020-1510915933:767473..767604Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:767165..767299TCONS_00002523-exon-sc0000020-1510915933:767165..767299Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:766386..766503TCONS_00002523-exon-sc0000020-1510915933:766386..766503Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:765678..765856TCONS_00002523-exon-sc0000020-1510915933:765678..765856Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:762242..762332TCONS_00002523-exon-sc0000020-1510915933:762242..762332Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1510915933:760645..761255TCONS_00002523-exon-sc0000020-1510915933:760645..761255Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:769480..769624TCONS_00002523-exon-sc0000020-1491911889:769480..769624Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:767473..767604TCONS_00002523-exon-sc0000020-1491911889:767473..767604Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:767165..767299TCONS_00002523-exon-sc0000020-1491911889:767165..767299Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:766386..766503TCONS_00002523-exon-sc0000020-1491911889:766386..766503Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:765678..765856TCONS_00002523-exon-sc0000020-1491911889:765678..765856Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:762242..762332TCONS_00002523-exon-sc0000020-1491911889:762242..762332Clytia hemisphaericaexon
TCONS_00002523-exon-sc0000020-1491911889:760645..761255TCONS_00002523-exon-sc0000020-1491911889:760645..761255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:760645..769624 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0295156	0	0	0	0	0.0314532	0.0758939	0.142102	0.149233	0.246466	0.0598065	0.0982861	36.5705	24.6057	0.0502798	0.017986	0.0221572	0.0681314	61.7474	123.614	0.0285373	0	0.067684	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00002523 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 1.523e-24
Identity = 68/198 (34.34%), Postives = 95/198 (47.98%), Query Frame = 1 
Query:  343 NKWDKSADGLVYVPYELF-QMGSQGQFAVAAAAREFENKTCIRLREKRPEDEHFIRVIDSSLDGCSSSIGRVGGRQTISLASNGCQI-EGIAIHEFLHALGLGHTQQRGDRDRFMKIDWSNIQIGFEGNFRIPPLDYLDVLGEHFCYESVMMYGRRDFAIDRSKDVISTPGYDGIIGQRVTWAKCDIDQINRYYHCED 930
            NKW     G+V VP+ L  +     +  +  A  EFE  TCIR    + +   FI +I   + GC SS+GR GG Q +SLA    Q   GI +HE +H LG  H   R DRDR+++++W+ I  GFE NF          +   + Y SVM YGR  F+      +         IGQR   +  DI ++ + Y C  
Sbjct:   92 NKWPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQ-DQRDFISIIP--MYGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFI---KSQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSP 283
The following BLAST results are available for this feature:
BLAST of TCONS_00002523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL1.523e-2434.34Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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