TCONS_00002575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002575
Unique NameTCONS_00002575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002575 ID=TCONS_00002575|Name=TCONS_00002575|organism=Clytia hemisphaerica|type=transcript|length=569bp
ctcacgAAATTTAGCCTCAGTCTGCGCACTAGTCTTATTTTCCAtgggtt
ttcaaattttcttataaagtctTCAAGTTTCAAGTCTTATAAAAAGTAAC
CAAGGGCGTTTAGTTTGAATTTCAAGCATCACATAATGCAAATTGAGCAA
TTTTCTCTATTGAAACAATGAAGAGCAGATTGTGAAATTAATTTGATATT
TGTTGATTCTTGTTAGTGCTAAATGAGGGGTGTACACCCAAAAATTGCAA
ATTAATTACATAGAGCACGTGTAGACCATGtgaattgttgtttttctttt
gtcttaGTAATAAAACAATAATTTGGTCATTTTGGAACATTCTTTTTCTC
TACTTTACTAAACAATGTGACGGAGGTTTTGCATTGTAAAATGCTGACTA
ACTGTTTCATGTTACTATGACAACGCAAAAATGGTGTCACTGCGCAACAG
CGTAGTCGTTTACATAGAAGTTTAGAAAGCTCAAGGTTGGGAGGAGGGTC
GCTGGCCCACAGAACGCAGATGTTTTTTCTGATACAACATCTGACGCATA
ACAGTATGGTTATGAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000020:718856..719424

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002575 ID=TCONS_00002575|Name=TCONS_00002575|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000020:718856..719424 (Clytia hemisphaerica)
ATTTTCATAACCATACTGTTATGCGTCAGATGTTGTATCAGAAAAAACAT
CTGCGTTCTGTGGGCCAGCGACCCTCCTCCCAACCTTGAGCTTTCTAAAC
TTCTATGTAAACGACTACGCTGTTGCGCAGTGACACCATTTTTGCGTTGT
CATAGTAACATGAAACAGTTAGTCAGCATTTTACAATGCAAAACCTCCGT
CACATTGTTTAGTAAAGTAGAGAAAAAGAATGTTCCAAAATGACCAAATT
ATTGTTTTATTACtaagacaaaagaaaaacaacaattcaCATGGTCTACA
CGTGCTCTATGTAATTAATTTGCAATTTTTGGGTGTACACCCCTCATTTA
GCACTAACAAGAATCAACAAATATCAAATTAATTTCACAATCTGCTCTTC
ATTGTTTCAATAGAGAAAATTGCTCAATTTGCATTATGTGATGCTTGAAA
TTCAAACTAAACGCCCTTGGTTACTTTTTATAAGACTTGAAACTTGAaga
ctttataagaaaatttgaaaacccaTGGAAAATAAGACTAGTGCGCAGAC
TGAGGCTAAATTTcgtgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001394XLOC_001394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002575-exon-sc0000020-1491911889:718856..719424TCONS_00002575-exon-sc0000020-1491911889:718856..719424Clytia hemisphaericaexon
TCONS_00002575-exon-sc0000020-1510915933:718856..719424TCONS_00002575-exon-sc0000020-1510915933:718856..719424Clytia hemisphaericaexon
TCONS_00002575-exon-sc0000020-1575043694:718856..719424TCONS_00002575-exon-sc0000020-1575043694:718856..719424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:718856..719424 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18259	0.961011	0.334748	0.218332	0	0	0	0	0	0	0	0	0.196626	0	0.111919	0.180159	0	0	0	0	0.381132	0	0	0.308186	0	0	0	0	0.218764	0.222886
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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