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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002510 ID=TCONS_00002510|Name=TCONS_00002510|organism=Clytia hemisphaerica|type=transcript|length=2120bpRun BLAST on NCBI protein sequence of TCONS_00002510-protein >TCONS_00002510-protein ID=TCONS_00002510-protein|Name=TCONS_00002510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=691bp MEAILSDLNFDEGMALPIANVENKHMESELELKHKDIGRIRDDIDQYIERRun BLAST on NCBI transcript from alignment at sc0000020:452592..473871- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002510 ID=TCONS_00002510|Name=TCONS_00002510|organism=Clytia hemisphaerica|type=transcript|length=21280bp|location=Sequence derived from alignment at sc0000020:452592..473871- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:452592..473871- >TCONS_00002510 ID=TCONS_00002510|Name=TCONS_00002510|organism=Clytia hemisphaerica|type=CDS|length=31095bp|location=Sequence derived from alignment at sc0000020:452592..473871- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002510 vs. Swiss-Prot (Human)
Match: CCD39 (Coiled-coil domain-containing protein 39 OS=Homo sapiens GN=CCDC39 PE=2 SV=3) HSP 1 Score: 540.806 bits (1392), Expect = 1.937e-179 Identity = 325/688 (47.24%), Postives = 474/688 (68.90%), Query Frame = 1
Query: 55 ILSDLNFDEGMALPIANVENKHMESELELKHKDIGRIRDDIDQYIERVRAMSGHLKNVRQERQQTQELFNARNREVNTEEHAKQLAEREEGRLKAEILRLEKELDGIKERKNVYENNIFKGTEKVENLKGQMNWDQQSLNAWLKESAKRDEDTLILQKYARADEGKIKELSLKQEKLVDESTKRRRAXXXXXXXXXXXXXXXDKVSEAFREAHQARQELLEQWENTIKQMQRRDNEIDEASLRLMELRVNVKTKQEDMKDRQQFXXXXXXXXXXXXXXISMAERNAAKLRLEYQNIENSRQQFQDELETLKYKVDRTAKDLESTRRKANELKNEVAIRQDKLSRAVDVKEELIEQLTLAEDSKMTAEERSDRLEAALKKEQQRIVDVEKELAKLREMQFKKTQDLYQVRQMETNTNAEIHGAKAASRNLSSKLYKLDQESLKQQEIVYNQDFQLQQAERKLIRLQGDRTNEEKNQLNEKIKQLTGILEGHQNKQTMLTAQLKKLGDDLRRANRDLSKGEDETKNLTNKIGELTLHNDSSERELRNIKNKKEDLMVDENLLKLEIKRLRDQLFNRATEVLSLEDRRLLLETAMKERRQEIYIHTDMLKAQVKTSEDERQKISAELHERISKIEKLRKRYEILMVSMAPPEGEEEKTQAYYVIKAAQEKEELQRTGDQLDAKIRKAEKEI 2118
L++L++++G A+P+AN ENK +E +L + ++D++ +Y ER+ +M+ H KNV+QE TQ L AR RE +EEH K +A+RE GR+K EI RLE E+ I E+K+ EN IFK T+K++ LK QMNWDQQ+L AWL+ESA +D D L LQKYA+ D+ KI+ L+L+ E+L E ++R+ L++E+T+T++ QLELDK ++ FR+ H RQEL++QWENTI+QMQ+RD +ID +L L ++ + K+ +K++ +FL+ E+ NN E EK+IS+A+R K R YQ+ E SR Q + EL++LK V+RT+ DLE+ R+ +++K ++ +L + + E + +L + M+ EE++ LE LK+E++ + +V+ +L ++ + FKK Q+L E +EI G +++ ++L+ +L KLD E+LKQQEI+Y+QDF +QQ ER++ RL+G+ +EEK L KI +L LE ++ +L Q+KKL +DL + SK DE ++L KI EL L D SE+EL K K+DLM+++NLLKLE+KR R+ L ++A EVLSLE R+ L TAM+ER +EI +H ML +Q++ + ER+ IS E ER+SKIEKL+ RYEIL V M PPEGEEEKTQAYYVIKAAQEKEELQR GD LDAKI KAEKEI
Sbjct: 5 FLAELHWEDGFAIPVANEENKLLEDQLSKLKDERASLQDELREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEHFKAIAQRELGRVKDEIQRLENEMASILEKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKDSDALTLQKYAQQDDNKIRALTLQLERLTLECNQKRKILDNELTETISAQLELDKAAQDFRKIHNERQELIKQWENTIEQMQKRDGDIDNCALELARIKQETREKENLVKEKIKFLESEIGNNTEFEKRISVADRKLLKCRTAYQDHETSRIQLKGELDSLKATVNRTSSDLEALRKNISKIKKDIHEETARLQKTKNHNEIIQTKLKEITEKTMSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQELQTETMKEKAVLSEIEGTRSSLKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCGLLETQIKKLHNDLYFIKKAHSKNSDEKQSLMTKINELNLFIDRSEKELDKAKGFKQDLMIEDNLLKLEVKRTREMLHSKAEEVLSLEKRKQQLYTAMEERTEEIKVHKTMLASQIRYVDQERENISTEFRERLSKIEKLKNRYEILTVVMLPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKAEKEI 692 The following BLAST results are available for this feature:
BLAST of TCONS_00002510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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